Advanced Academic Writing: Week 5 11/2 (Wed)
Advanced Academic Writing: Week 5 11/2 (Wed)
Week 5
11/2 (Wed)
• With different names
• Methodology, Materials and Methods, Experimental,
Simulations, Model, Experimental design, or the specific
name of your method
• Factors influencing how the Methods section is
communicated
Methods • The number of peer-reviewed articles is increasing every year
section
• The way research articles are accessed is changing
• Online; the advent of so-called supplementary materials (including
appendices)
• People usually don’t have time
• Sometimes people don’t read the entire paper
• Abstract
• Abstract → Results → Discussion
• Abstract → Results → Discussion
2
What’s purpose of Methods?
• To present enough information so that other researchers can replicate what you did
• Does this mean you should include all detailed information possible?
• You need to strike the balance between how much you put in the paper and how much
you put in the supplementary materials
• The best way to find the balance is to research your target articles
• But(!), too much supplementary materials could be bad
• Readers have to shift through many pages to find information they want
• What’s cited in supplementary is not usually tracked
• Rule of thumb:
• It is better to give slightly too much information than too little
3
Your methods and choices
are obvious to you but not to
your readers.
4
Methods section =
5
The structure of the Methods section – reverse-engineering it
Title
Introduction
Abstract
Introduction
(Literature
review)
Analyze
Methods
Body
Results
1. State the importance of the topic
2. Provide the background
Discussion
Identify 3. Discuss relevant research
Conclusion 4. Point out the gap in the literature
5. Describe your research
References
6
• Break into groups of 4-5 people
• Read the following example of the Methods section
individually
• Discuss the function of each sentence
• Write a short description of what each is doing (not
what it’s saying)
Building a https://docs.google.com/presentation/d/17P4KnVYxK
model b_MdGlheks-
9Zy8jYV_Va5NARkNHAPYIbU/edit?usp=sharing
• Make sure to think about the following questions:
1. What are some common ways to start the section?
2. What is normally in the section, and in what order?
3. What are some common ways to end the section?
7
A method to analyze levels of dissolved CO2 in pristine groundwater
[1] The current investigation involved collecting and analyzing groundwater samples
from six wells in the Mahomet Aquifer region to determine levels of dissolved CO2 . [2] This
region is in the Midwestern United States, and since groundwater in this area contains virtually
no modern contaminants wells in this area have been frequently used to interpret groundwater
evolution.
[3] A total of 18 3 mL samples were collected for analysis; three from each well. [4] Prior
to collection, stagnant water was pumped out of the wells using a Grundfos® Redi-Flo II electric
submersible pump. [5] pH levels were monitored during pumping using a pH meter (Sartorius
AG, Professional Meter PP-50, Gottingen, Germany) until stable pH readings were obtained, at
which point the samples were taken. [6] The samples were transferred to amber glass bottles,
which were sealed tightly and then stored under refrigeration at 5°C to prevent contamination
until they could be analysed. [7] Samples were shipped directly to two separate laboratories at
Imperial College London, where the amount of dissolved organic carbon was measured using a
revised version of the method established by the Illinois Sustainable Technology Center. [8] This
method uses a carbon analyser with a detection limit of 0.050 mg L−1, which ensured highly
sensitive detection of carbon residues. [9] All filters used were glass or stainless steel, and
although two samples were at risk of CFC contamination as a result of brief contact with plastic
and other anthropogenic materials at the source location, variation among samples was
negligible. 8
In sentence 1, the writer
In sentence 4, the writer gives details of what was done and the sequence of events.
In sentence 5, the writer gives details of what was done and the sequence of events.
9
In sentence 1, the writer gives an overview of the methods, including the aim of the investigation and the
source of the sample.
In sentence 2, the writer provides background information and justifies the choice made via factual
information and/or references to previous studies.
In sentence 3, the writer makes a general statement about the procedure.
In sentence 4, the writer gives details of what was done and the sequence of events.
In sentence 5, the writer gives details of what was done and the sequence of events.
In sentence 6, the writer further describes what was done in detail, with language that communicates that
care was taken, and providing justification.
In sentence 7, the writer provides more details of what was done/used, with reference to and citing existing
methods.
In sentence 8, the writer provides more detail about the procedures that were used, and justifies the choice
made using language that specifies the advantage.
In sentence 9, the writer mentions a possible difficulty or problem in the method.
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Sentence 1 & 3: Providing an overview
Common ways (to provide an overview):
1. Provide a general overview by outlining the parameters of the work, e.g., the number
of tests, the number/size of the sample, the materials/equipment
• A three-step approach was used to determine the muscle forces needed to restore ATT in the ACLd knee
• The MC code system PENELOPE 2003 and the main program PENCYL were used to calculate the absorbed dose in the detector and
surrounding water phantom.
3. Refer to something in the previous section, such as the aim of the project or the
problem you are addressing.
• In the literature review, we discussed that the methodological issue in the existing research is that researchers do not consider for the
potential effect of confounding variables that may affect how ESCA would function.
12
Sentence 4, 5, 6, 7, & 8: Provide details of and about methods
14
A method to analyze levels of dissolved CO2 in pristine groundwater
[1] The current investigation involved collecting and analyzing groundwater samples
from six wells in the Mahomet Aquifer region to determine levels of dissolved CO2 . [2] This
region is in the Midwestern United States, and since groundwater in this area contains virtually
no modern contaminants wells in this area have been frequently used to interpret groundwater
evolution.
[3] A total of 18 3 mL samples were collected for analysis; three from each well. [4] Prior
to collection, stagnant water was pumped out of the wells using a Grundfos® Redi-Flo II electric
submersible pump. [5] pH levels were monitored during pumping using a pH meter (Sartorius
AG, Professional Meter PP-50, Gottingen, Germany) until stable pH readings were obtained, at
which point the samples were taken. [6] The samples were transferred to amber glass bottles,
which were sealed tightly and then stored under refrigeration at 5°C to prevent contamination
until they could be analysed. [7] Samples were shipped directly to two separate laboratories at
Imperial College London, where the amount of dissolved organic carbon was measured using a
revised version of the method established by the Illinois Sustainable Technology Center. [8] This
method uses a carbon analyser with a detection limit of 0.050 mg L−1, which ensured highly
sensitive detection of carbon residues. [9] All filters used were glass or stainless steel, and
although two samples were at risk of CFC contamination as a result of brief contact with plastic
and other anthropogenic materials at the source location, variation among samples was
negligible. 15
The menu of the Methods section
Provide an overview of or a general statement about the methods
16
Influence of electrodes on the photon energy deposition in CVD-diamond dosimeters studied with the Monte
Carlo code PENELOPE
Materials and methods
The MC code system PENELOPE 2003 (Salvat et al. 2003) and the main program PENCYL were used to calculate the
absorbed dose in the detector and surrounding water phantom. In order to minimize the time of the simulations, the
geometry of the diamond layer and electrodes was simplified by adopting an infinite-slab geometry [...] Since the
present study focuses on the metal/diamond/metal interface phenomena, the housing of the detector was regarded as
water equivalent and thus replaced by water. The influence of metallic electrodes of different thicknesses on the
absorbed dose to the diamond was investigated. Electrodes made of silver were simulated first. Silver is a common
material because it has a high electrical conductivity, forms ohmic contact with diamond and the technology of its
thermal deposition as well as contacting the detector with silver epoxy glue is well established. [...]
A careful selection of simulation parameters was needed in order to preserve accuracy while completing the
calculations within reasonable CPU times. In the course of the simulations, each particle (a primary or secondary
photon, electron or positron) was transported until its energy fell below the corresponding pre-selected absorption
energy, Eabs; when this happened, its energy was deposited locally and simulation of the particle was discontinued. The
mixed algorithm implemented in PENELOPE for the tracking of electrons and positrons is governed by specific
simulation parameters, namely C1, C2, Wcc and Wcr, whose definitions and role are explained at length in Salvat et al.
(2003). For the sake of brevity, here we just enumerate them and quote the adopted values. [...]. We found it convenient
to use different simulation parameters depending on the distance of the particles to the active layer and electrodes. To
this end, we considered that the detector, where the most ‘conservative’ simulation parameters were selected, was
surrounded by three ‘shells’ of water with successively increasing thickness and values of Eabs. [...]. In this way,
charged particles which were far away from the detector and did not have sufficient energy to reach it were absorbed
and no longer simulated. [...] This procedure substantially reduced the simulation time. In fact this approach is
equivalent to the variance-reduction technique called range rejection, but did not require any changes in the main
program and could be implemented straightforwardly through the input file.
17
Adjusting the model to your target articles
• Now look at your target articles (at least two articles) and read their
method section
• How does the model generalize to your target journal/field?
• What components are there?
• Do you need any additional components?
• Creta a model for yourself and drop it here:
• https://drive.google.com/drive/folders/16rW6pQmgeN76CKsYWNpW00LE5t-
u8MAB?usp=sharing
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Exercise
Look carefully through the following example of Methods section and find
words/phrases that could be used in the four areas below:
Describe the source of materials/equipment used
Provide details about materials and methods (+/- justification or indication that you took appropriate care)
Example
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Language to provide specific and precise details of materials and methods (Verbs)
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Categorize the following words in the eight groups
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Group 1 Group 2 Group 3 Group 4
• beforehand • at first • after • prior to • quickly
• earlier • at the beginning • afterwards • secondly • shortly after
• formerly • at the start • earlier • subsequently • soon
• in advance • firstly • followed by • then
• originally • in the beginning • following
• previously • initially • formerly
• prior to • to begin with • next
• initially • to start with • previously
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Agentless passive and verb tense
• Using agentless passive can create ambiguity
• It looks identical whether the method is by your own work or the work of another researcher
• It risks losing ownership of your contribution and unknowingly contribute someone else for
your work
→ Very confusing for the reader and more importantly reviewers!
• Inappropriate use of verb tense can create confusion
• An analysis was conducted using the XY algorithm.
• An analysis is conducted using the XY algorithm.
• Be meticulous!
• Your job is not to simply to make it possible for the reader to understand but to make it
impossible for the reader not to understand.
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Some better approaches
• XY was collected (by me in the procedure or work that I carried out)
• Change to the active: We collected XY.
• Add words like here, in this study, etc.: In this study, XY was collected.
• XY was collected (by someone whose work I am using as a basis for mine)
• Give reference: XY was collected using the Z method (AB & CD, 2012).
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Prepositions
• Prepositions have an impact on meaning
• evidence of X vs. evidence for X
• X was substituted for Y = ? replaced ?
• X was substituted with Y = ? replaced ?
• Even if you think you are familiar with these …
• Your reader (and a wider audience) may not be!
• BE METICOUS!
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Some strategies for dealing with prepositions
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Some strategies for dealing with prepositions
30
Some strategies for dealing with prepositions
31
Using 1. Which ones are countable nouns?
A, THE, ϕ 2. Should I use a/an, ϕ, or the?
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Which ones are uncountable nouns?
absence danger failure information paper reality treatment
https://docs.google.com/presentation/d/1uMLzpW7sUjHT8uxYOKgwemHnmz1Xhd
QjCx0XmfAOcUQ/edit?usp=sharing 33
Which ones are uncountable nouns?
absence danger failure information paper reality treatment
https://docs.google.com/presentation/d/1uMLzpW7sUjHT8uxYOKgwemHnmz1Xhd
QjCx0XmfAOcUQ/edit?usp=sharing 34
Should I use a/an, ϕ, or the?
• Use a/an
• when you mention a singular countable noun for the first time
• when it does not matter, or you don’t know or the reader does not know which thing you mean
• to make a general statement about a countable noun in the singular
• A semiconductor can conduct electricity under certain conditions
• Use ϕ
• to make a general statement about in the plural
• Use to make a general statement about an uncountable noun
• when you mention a plural countable noun for the first time
• Use the
• when there is really only one possibility
• when it is definitely known or obvious to the reader
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Any Question so far?
Provide an overview of or a general statement about the methods
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Results
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Four possible options to structure the final sections
• Most versatile
Option 1 Results Discussion Conclusion
• Second common
Option 3
Results and Conclusion
• Most common in engineering articles
• When preliminary results influence later ones
Discussions • When you have multiple hypotheses and predictions
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Charts and graphs: Types
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https://www3.nd.edu/~pkamat/pdf/graphs.pdf
Charts and graphs: Examples
A B
AAA1
40 40 BRWK
CQQP
35 AAA1 35 DTYI
BRWK
CQQP FP5A
30 DTYI
FP5A 30
Data from site A
Parameter Y
25 25 Newly developed
Parameter Y
machine
20 20
15 15
10 10
5 5
0 0
0 1 2 3 4 5 0 1 2 3 4 5
Parameter X Parameter X
Figure 1. XXXX Figure 1. XXXX
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Charts and graphs: Summary (Tufte, 1983, p. 183)
A good graphic
• Avoids abbreviations
• Lists a legend and/or label that runs from left to right (Avoid vertical and
multiple directions)
• Does not require repeated references to the main text
• Uses appropriate colors
• Uses a clear, precise, and modest font à Upper and lower case, with serifs
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Workshop: Presenting Results Data
Problem:
• Solar radiation intensity decreases exponentially as you move further
from the sun.
• At Venus (0.8 Astronomical Units) the intensity is 2600 W/m2
• At Earth (1.0 Astronomical Unit) the intensity is 1400 W/m2
• At Mars (1.5 Astronomical Units) the intensity is 600 W/m2
• At Jupiter (5.0 Astronomical Units) the intensity is 50 W/m2
Earth
Mars
Jupiter
Workshop: Presenting Results Data
Problem:
• The five largest economies in the world are:
1. United States (GDP = $21.4 Trillion USD)
2. China (GDP = $14.1 Trillion USD)
3. Japan (GDP = $5.8 Trillion USD)
4. Germany (GDP = $3.9 Trillion USD)
5. India (GDP = $2.9 Trillion USD)
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• Report all the main and important findings
• Summarize the data in good arranged graphs
and tables and state your main findings
based on them
• Do NOT omit contradictory results (but you
do not have to include all your results)
Results • Never provide results without an
interpretation. To interpret you should be
able to present your results talking about:
• Sequence
• Frequency
• Quantity
• Causality
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On-bicycle exposure to particulate pollution: using a portable device for accurate measurement
[1] Data obtained in previous cycling safety studies1,5,7 used fixed monitors positioned at high-emission
locations to measure weekday concentrations of black carbon (BC) and nitrogen dioxide (NO2). Those studies
found no significant difference in BC and NO2 emissions between cycle lanes shared with buses and cycle
lanes separated from vehicle traffic. [2] In our study, BC and NO2 concentrations were measured using a
PEMS-43, a portable emissions measurement system developed by Noxious et al.7 The PEMS-43 was fixed to
a bicycle and recorded the emissions hourly along each route type.
[3] Figure 1 shows the BC and NO2 concentrations measured hourly on each route type from 6.00
a.m. to 10.00 a.m. [4] In line with results from previous studies, the BC and NO2 concentrations were broadly
similar for both route types over this 4-hour period. However, the data obtained by PEMS-43 for journeys
later in the day were significantly different. [5] We recorded a striking reduction in the NO2 concentrations
along bike paths separated from vehicle traffic, beginning shortly after 10. 00 a.m. (Figure 2). [6] As can be
seen, by 2.00 p.m. the NO2 levels had fallen by as much as 33%, and this low level was maintained even
during the 5.00 p.m. to 7.00 p.m. peak traffic density period. [7] These results suggest that NO2 levels along
bike paths separated from vehicle traffic may not match those of BC at all times throughout the day. [8] The
presence of vegetation is known to slightly alter BC and NO2 concentrations at different times of day11,18, and
the effect of this along the two routes was not investigated. [9] Nevertheless, the data obtained here suggest
that using a portable emissions measurement system to measure BC and NO2 exposures hourly may provide
more accurate information for traffic management strategies than traditional on-site measurement.
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General Model of Results
• Revisiting a previous part of the article
• Revisit the aim of the study or RQs and Hypotheses
• Give a general statement about the results
• Invite to view specific graphics or tables as a summary
• Provide specific results with some evaluative language
• Compare with results in previous studies
• Compare with model, simulation, or predicted results
• Explanation of results via known facts or methods
• Issues with results
• Possible implication of results
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Sample passage 1
Fig. 6 180-degree bending test results for (a) 0.7 mass%Fe (b) 1 mass%Fe
The hemming process is performed at the end of a plate during the
manufacturing of the automobile body. The judgment of whether or not a
plate is suitable for hemming is done using the 180-degree bending test.
Fig. 6 shows the results of the bending test. When the Fe content was less
than 0.7 mass%, no influence was observed on the surface of the bent strip
(a). However, when the content of Fe was greater than 1.0 mass%, a crack
was observed on the outer surface (b). These results show that an Fe
content of up to 0.7 mass% is allowable for high-speed twin-roll casting.
53
Sample passage 1
General explanation
Fig. 6 180-degree bending test results for (a) 0.7 mass%Fe (b) 1 mass%Fe
The hemming process is performed at the end of a plate during the
manufacturing of the automobile body. The judgment
Figure of whether or not a
plate is suitable for hemming is done using the 180-degree bending test.
Fig. 6 shows the results of the bending test. When the Fe content was less
than 0.7 mass%, no influence was observed on theFindings
surface of the bent strip
(a). However, when the content of Fe was greater than 1.0 mass%, a crack
was observed on the outer surface (b). These results show that an Fe
content of up to 0.7 mass% is allowable for high-speed twin-roll casting.
Comments
54
Sample passage 2
Analytical method
Figure
...
Findings
Riquelme, Mario A., Eliot Quataert, and Daniel Verscharen. "Particle-in-cell simulations of continuously driven mirror and
55
ion cyclotron instabilities in high beta astrophysical and heliospheric plasmas." The Astrophysical Journal 800.1 (2015): 27.
Results
What to write: How to write it:
• Main and important findings • Interpret and comment on (vs.
discuss) the findings
• Well organized tables and/or
clear figures • Describe figures in the text
and point the reader to figures
• Interpretation of the results and tables
Grammar Can your paper answer these
• Use past tense for what was questions?
done and present tense for
statements of general validity • What are the main findings?
• Use precise vocabulary • How did you interpret the
• Avoid wordiness results?
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• according to the data in Fig. 1 • (see Fig. 1)
• as can be seen from/in Fig. 1 • We observe X from/in Fig. 1
• based on Fig. 1
• X can be found in Fig. 1 • contains
• X can be seen from/in Fig. 1 • demonstrates
• Fig. 1 indicates • displays
Language • (close) inspection of Fig. 1 • illustrates
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Language tips: Describing results
• is absent • exist • abrupt • extensive • pronounced • virtually
• is constant • fall • adequate • generally • predominant • weakly
• is different • increase • appropriate • in general • rapid
• is equal • match • brief • in principle • remarkable
• is higher/highest • occur • broadly • inadequate • severe
• is identical • precede • by and large • mainly • sharp
• is present • produce • clear • major • similar
• change • reduce • comparable • merely • steep
• decline • remain • consistent • minor • striking
• decrease • resume • dramatic • more or less • sufficient
• delay • rise • effectively • obvious • unexpected
• drop • vary • essentially • profound • unlikely
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