CH 1 Virology
CH 1 Virology
Learning objectives
Upon completion of this chapter, the student will be able to:
1. Define virus.
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2. Structure of a virus
or peplomers
Basic virus structure
Fig. 1. From Medical Microbiology, 5th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005,
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2. Structure of a virus
• All viruses consists of a central core of Nucleic acid (Genome) which is RNA or DNA.
• This central Nucleic acid is covered by a protein coat called CAPSID .
– The capsid is antigenic and also contains receptors which enable a virus to attach to the surface of its
specific host cells.
– The capsid itself is composed of number of sub unit is called CAPSOMERE.
– The capsomere may be arranged as under.
• Around coiled nucleic acid which is known as helical arrangement.
• As cubes around spheroidal nucleic acid known as IcosaIhedral arrangement .
• Some virus do not fit either helical or icosahedral capid symmaty is called complex symmetry.
• Finally the capsid may be covered by an ENVELOPE is called enveloped virus.
– The envelop is derived from host cells membrane when virus is released by budding, envelope is lipo
protein in nature.
– Envelope viruses compared with non-enveloped (nacked) viruses enveloped virus are more sensitive
to heat, detergent, and liquid solvents .
• Protein sub units may be seen as projecting spikes on the surface of the envelope.
• These are called peplomers. peplomers used as a receptor
complex symmetry.
IcosaIhedral
helical arrangement
3. Classification of viruses
The main Characteristics for Classification of viruses
1. Genome or Type of Nucleic Acid
DNA (Deoxyribovirus) or RNA (RiboVirus)
Strands of nucleic acid (double (Ds) or single strand(Ss) )
linear or circular
Strategy of replication (Positive sense & negative sense RNA)
Positive sense RNA can be translated directly into protein
or directly act as mRNA.
Negative sense RNA can be transcribed by a virus coded,
virion packaged RNA dependent RNA polymerase
2. Size & morphology
Type of symmetry ( Icosahedral, Helical and Complex )
Presence or absence of envelope (envelop and non-envelop or
nacked virus) 10
3. Presence of specific enzymes
E.g: - Reverse transcriptase
4. Host tissue or cell tropism
E.g: Hepatitis viruses, HIV, etc
5.Mode of transmission e.g. Arboviruses
6. Host range E.g. Animal, bacteria, plant
7. Type of disease E.g. encephalitis
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Classification viruses---
• Dynamic
• Universal system of virus taxonomy
• Major groups (families basis of
- Virion morphology
- Gene structure
- Strategies of replication ( Baltimore classification)
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Classification viruses---
• By 7th ICTV report
- More than 4000 viruses →
- 3 Orders
- 63 families, 9 subfamilies, 240 genera. 100’s
unassigned
- Currently 24 families that infect humans and
animals
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Classification viruses---
Names & typography of virus species
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Classification of viruses---
System evolved (developed)
• 1 Viruses grouped in to families : virion
morphology, genome structure, strategis of
replication
• Suffix for Order- virales, for families - viridae (eg- Filo,
Para and rhabd--)
• 2 some large families (Herpesviridae, Parvoviridae,
paramyxovoridae)-subfamilies Suffix- --virinae for
subfamilies
• 3 Genera: physiochemical and serologic
differences- name suffix for Genera -virus
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Classification of viruses---
Example
• Measles virus
Order Mononegavirales
Family Paramyxoviridae
Subfamily Paramyxovirinae
Genus Morbilivirus
Species Measles virus
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Medically Important Viruses
Or
Pathogenic Viruses
DNA VIRUSES
HERPESVIRIDAE
HEPADNAVIRIDAE
CIRCULAR LINEAR
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RNA VIRUSES
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Classification of Human Viruses
"Group" Family Genome Genome size (kb) Capsid Envelope
dsDNA
Poxviridae dsDNA, linear 130 to 375 Ovoid Yes
Herpesviridae dsDNA, linear 125 to 240 Icosahedral Yes
Adenoviridae dsDNA, linear 26 to 45 Icosahedral No
Polyomaviridae dsDNA, circular 5 Icosahedral No
Papillomaviridae dsDNA, circular 7 to 8 Icosahedral No
ssDNA
Anellovirus ssDNA circular 3 to 4 Isometric No
Parvoviradae ssDNA, linear, (- or +/-) 5 Icosahedral No
Retro
Hepadnaviridae dsDNA (partial), circular 3 to 4 Icosahedral Yes
Retroviridae ssRNA (+), diploid 7 to 13 Spherical, rod or cone shaped Yes
dsRNA
Reoviridae dsRNA, segmented 19 to 32 Icosahedral No
ssRNA (-)
Rhabdoviridae ssRNA (-) 11 to 15 Helical Yes
Filoviridae ssRNA (-) 19 Helical Yes
Paramyxoviridae ssRNA (-) 10 to 15 Helical Yes
Orthomyxoviridae ssRNA (-), segmented 10 to 13.6 Helical Yes
Bunyaviridae ssRNA (-, ambi), segmented 11 to 19 Helical Yes
Arenaviridae ssRNA (-, ambi), segmented 11 Circular, nucleosomal Yes
Deltavirus ssRNA (-) circular 2 Spherical Yes
ssRNA (+)
Picornaviridae ssRNA (+) 7 to 9 Icosahedral No
Calciviridae ssRNA (+) 7 to 8 Icosahedral No
Hepevirus ssRNA (+) 7 Icosahedral No
Astroviridae ssRNA (+) 6 to 7 Isometric No
Coronaviridae ssRNA (+) 28 to 31 Helical Yes
Flaviviridae ssRNA (+) 10 to 12 Spherical Yes
Togaviridae ssRNA (+) 11 to 12 Icosahedral Yes
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Major diseases caused by human viruses
"Group" Family Human pathogens (disease)
dsDNA
Poxviridae Variola (smallpox); Orf (pustular dermatitis); Molluscum contagiosum (pustular dermatitis)
Herpesviridae Herpes simplex 1,2 (oral, genital herpes); Varicella-zoster (chickenpox); Epstein-Barr (mononucleosis);
Cytomegalovirus (neonatal abnormalities); HHV6 (roseola); HHV8 (Kaposi's sarcoma)
Adenoviridae Adenovirus (respiratory infection, conjunctivitis)
Polyomaviridae Polyomavirus (benign kidney infection, respiratory disease, leukoencephalopathy)
Papillomaviridae Papillomavirus (warts, genital carcinoma)
ssDNA
Anellovirus Unknown
Parvoviradae B-19 (fifth disease, fetal death)
Retro
Hepadnaviridae Hepatitis B ("serum" hepatitis)
Retroviridae HIV (aids); HTLV (leukemia)
dsRNA
Reoviridae Rotavirus (infantile gastroenteritis)
ssRNA (-)
Rhabdoviridae Rabies virus (rabies)
Filoviridae Ebola virus (ebola)
Paramyxoviridae Parainfluenza virus (respiratory infection); Mumps virus (mumps);
Respiratory syncytial virus (respiratory infection); Measles virus (measles)
Orthomyxoviridae Influenza virus (influenza)
Bunyaviridae Hantaan virus (hemorrhagic fever with renal syndrome)
Arenaviridae Lassa fever virus (hemorrhagic fever)
Deltavirus Hepatitis D (fulminant acute hepatitis)
ssRNA (+)
Picornaviridae Poliovirus (polio), rhinovirus (URI), Hepatitis A ("infectious" hepatitis)
Calciviridae Norwalk (gastroenteritis)
Hepevirus Hepatitis E (acute hepatitis)
Astroviridae Astrovirus (gastroenteritis)
Coronaviridae Coronavirus (respiratory infection)
Flaviviridae Yellow fever virus (yellow fever); Hepatitis C (hepatitis)
Togaviridae Eastern Equine encephalitis virus (encephalitis); Rubella virus (rubella) 21
Virus infectious cycle
(Replication of
RNA and
DNA virus)
3. Virus infectious cycle
Virus infectious cycle
• Viruses possess Neither a cellular structure nor organells.
• They are dependent on their host cells for energy & replication (multiplication)
• Outside of living cells, viruses are metabolically inert.
• The information required for a virus to replicate is contained in its nucleic acid (
genome)
• Following infection a virus takes over the synthesizing activities of its host cells
and Directing the host tell to transcribe and or translate its genetic information
to produce the protein and nucleic acid components required to make new
virions.
– Most DNA virus replicate and are assembled in the nucleus of the host cells.
– Whereas most RNA viruses replicate and are assembled in the cytoplasm of the host
cells.
• Mature virions are released from host cells either
– By rupture of the cell membrane as occurs with most un-enveloped (nackad) virus or
– By a process called budding in which enveloped virions are extruded from the cell
membrane.
3.2 Steps in Multiplication/Replication of a Virus
All viral multiplication sequence of events are as follows
1. Adsorption or attachment :- The virus is adsorbed at a particular
site on the host cell which is called a receptor.
2. Penetration: - Virus particles may be engulfed by animal cell by
the mechanism called viropexia. Viropexia is like phagocytosis. In
case of enveloped virus. The viral envelop may fuse with plasma
membrane and release eha nucleo-capsid in to cytoplasm.
3. Un coating: - This is a process by which the virus lose its outer
layar and capsid.
4. Bio-synthesis: - There is synthesis of viral nucleic acid and capsid
protein. Biosynthesis contain the following steps.
Transcription of massenger RNA from viral nucleic acid.
Translation of mRNA in to early proteins.
Replication of viral nucleic acid.
Synthesis of late proteins which are the components of daughter virion capsids.
3.Multiplication of a Virus con
5. Maturation: - Assembly of daughter virions follows synthesis of
viral nucleic acid and proteins. It may take place in nucleus or
cytoplasm of the host cell. -
− Enveloped viruses gets envelop from the host cell membrane during a process
of budding.
− Non enveloped (nacked) viruses are present intracellularly as fully developed
virions.
6. Release: - Viruses release take place by lysis of infected cells or
viruses release occur without cell-lyses. Some viruses like polio
may cause cell-lyses during their release.
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Antiviral agents ….
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5. Viral vaccines
Purpose of viral vaccines is to utilize immune response
of the host to prevent viral disease
Several remarkably effective
– Small pox eradicated
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How Do Vaccines Work?
• Stimulates adaptive immune response
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Requirements of a Vaccine
To be effective a vaccine should be capable of eliciting the following ;-
• Activation of Antigen-Presenting Cells to initiate antigen
processing and producing interleukins.
• Activation of both T and B cells to give a high a high yield of
memory cells.
• Generation of Th and Tc cells to several epitopes, to overcome the
variation in the immune response in the population due to MHC
polymorphism.
• Persistence of antigen, probably on dendritic follicular cells in
lymphoid tissue, where B memory cells are recruited to form
antibody-secreting cells that will continue to produce antibody.
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Types of viral Vaccines
1. Live whole virus vaccines
5. DNA vaccines
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LIVE ATTENUATED VACCINES
Ideal Condition:
• Virus alive and fully immunogenic but no virulence
• Utilizes virus mutants restricted in some steps in
pathogenesis of disease
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Live—reduction in virulence
• The virulence of the virus is reduced by
– Administration of pathogenic or partially attenuated virus
by unusual route,
– Passage of the virus in unnatural host or host cell.
• The major vaccines used in man and animals have all been
derived by this second method.
Example 17D strain of yellow fever was
developed by passage in mice and then
in chick embryo.
Polio viruses were passed in monkey
kidney cells
Measles in chick embryo fibroblasts.
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Live Vaccines
• Attenuated strains
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Live Attenuated Virus Vaccines
• Advantages
– Stimulates a broad immune response
• Neutralizing antibody
• Secretory iga for mucosal tissues.
• Cell mediated immunity (ctl)
– All antigens are expressed
– Production costs are lower
• Disadvantages
• Potential for genetic instability
• Risk of reversion to greater virulence in host
– Potential for contamination
– Infection can persist or be more severe in the
immunocompromised.
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Inactivated whole virus vaccines
• Simply inactivated
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Inactivated whole virus …
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Live vs Dead vaccines
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6.2. Determinants of viral disease
A. Nature of the disease and target tissue
• Immune status
• Immune pathology
Interferon
T- Cell response
Antibody Responses
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Viral pathogenesis…..
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6.4. Effect of virus on host cells
A. Direct and indirect damage
– Some viruses are able to shut down host
macromolecules synthesis and thus directly
damage host cells. The damaged cells lyse, which is
a cytopathic effect that can be detected in the
laboratory.
– Some virus infections indirectly affect the function
of tissues or organs in the host. e.g. the influenza
virus damages the respiratory epithelium and ciliary’s
activity is severely affected. This results in the
accumulation of bacteria that normally would be
eliminated by ciliary’s action.
B. Inclusion body formation
• The replication of virus in the cytoplasm or nucleus of
infected cells often results in the accumulation of viral as
well as cellular products. These accumulations, which
may be nucleic acids, proteins, and so on, can be
stained and are referred to as inclusion bodies. Some
inclusion bodies are so distinctive that their presence is
diagnostic.
• Example
Negribodies- rabies virus.
Owl’s eye-Cytomegalovirus
Cowdry type A-Herpes simplex virus
C. Cell fusion (syncytia formation)
• Enveloped viruses release specific proteins that become
incorporated in to cytoplasmic membrane of the infected cell.
These proteins act as magnets on the infected cell and attract
uninfected cells to their surface. This results in infection of the
originally un infected cell.
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6.5. Host defense against Viral infection
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Host defense against Viral infection……
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Host defense against Viral
infection……
4. Interferon
– The body firs active defense
– Interfere replication
– Initiate an anti-viral state in cells
– Block viral protein synthesis
– Inhibit cell growth
– Interferon alpha and beta activate NK cells
– Interferon alpha and gamma activate macrophage
– Increase MCH antigen expression
– Regulate activities of T cells
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Host defense against Viral infection……
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6.5.2.2. Cell mediated
– Essential for controlling enveloped &non cytolitic
infection
– Recognizes viral peptides presented by MCH
molecules on cell surfaces
– CTLs(CD8) kills virus infected cells & as result
eliminate the source of new virus
– It respond to viral peptide-class I MCH protein
complex
– CD4(TH cells) important for the maturation of
antibody response
– Respond to viral peptide-class II MCH protein
complex
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7. Epidemiology of viruses
• Infection of a population is similar to infection of a person, in
that the virus must spread through the population and is
controlled by immunization of the population. To endure
(survive), viruses must continue to infect new,
immunologically naïve, susceptible hosts.
7.1. Exposure
• People are exposed to viruses through out their lives.
• Many viruses are ubiquitous (found every where), as borne out by the fact that
evidence of exposure (antibodies to the virus) can be detected in most young
children (HSV –1, HHV6, varicella – zoster virus, parvovirus B19) or early adult
hood (EBV and respiratory and enteric viruses).
• Poor hygiene and crowded living, school, and job conditions promote exposure
to respiratory and enteric viruses.
• Day care centers are consistent sources of viral infections, especially viruses
spread by the respiratory and fecal-oral routes.
• Travel, summer camp, and vocations that bring people in
contact with a virus vector such as mosquitoes, put them at
particular risk for infection by arbo-viruses and other
zoonoses.
B. By injection
C. By organ transplantation
• Animals can also act as vectors that spread viral disease
to other animals or humans.
arthropod born.
• Other factors that can promote the transmission of
viruses are the potential for asymptomatic infection,
crowded living conditions, certain occupations, certain
lifestyle, day care centers, and travel.
• The persistence of a virus in a community depends on
the availability of a critical number of immunologically
naïve (sero negative), susceptible people.
• Immunization produced by natural means or by
vaccination, is the best way of reducing the number of
such susceptible people.
• The age of the person is an important factor in
determining his or her susceptibility to viral infection.
• Infants, children and the elderly are susceptible to different viruses.
• The competence of a person’s immune response and his or her
immune history determine how quickly and efficiently the infection is
resolved and can also determine the severity of symptoms.
• The geographic distribution of a virus is usually determined by
whether the requisite cofactors or vectors are present or whether
there is an immunologically naïve, susceptible population.
• Seasonal difference in the occurrence of viral disease corresponds
with behaviors that promote the spread of the virus.
• Out breaks of a viral infection often results from the introduction of a
virus (such as hepatitis A) in to a new location.
• The out breaks originate from a common source (e.g. food
preparation)
• Epidemics occur over a larger geographic area and
generally result from the introduction of a new strain of
virus in to an immunologically naïve population.
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