Genetics For Pediatricians The Molecular Genetic: Basis of Pediatric Disorders 1st Edition Mohnish Suri
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Genetics for Pediatricians The Molecular Genetic Basis
of Pediatric Disorders 1st Edition Mohnish Suri Digital
Instant Download
Author(s): Mohnish Suri, Ian Young
ISBN(s): 9781901346633, 1901346633
Edition: 1
File Details: PDF, 1.43 MB
Year: 2005
Language: english
P481_GenForPed_Cov2.qxd 24/8/04 10:13 Page 1
Series Editor
ISBN 1-901346-63-3 Eli Hatchwell
Remedica
9 781901 346633
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While every effort is made by the publishers and authors to see that no inaccurate or misleading data, opinions, or
statements appear in this book, they wish to make it clear that the material contained in the publication represents
a summary of the independent evaluations and opinions of the authors and contributors. As a consequence, the authors,
publishers, and any sponsoring company accept no responsibility for the consequences of any such inaccurate or
misleading data, opinions, or statements. Neither do they endorse the content of the publication or the use of any
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All rights reserved. No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or
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ISBN 1 901346 63 3
ISSN 1472 4618
British Library Cataloguing-in Publication Data
A catalogue record for this book is available from the British Library.
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Mohnish Suri
Department of Clinical Genetics
City Hospital
Nottingham
UK
Ian D Young
Department of Clinical Genetics
Leicester Royal Infirmary
Leicester
UK
Series Editor
Eli Hatchwell
Investigator
Cold Spring Harbor Laboratory
USA
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The rapidity of the genetics revolution has left many physicians behind,
particularly those whose medical education largely preceded its birth.
Even for those who might have been aware of molecular genetics and
its possible impact, the field was often viewed as highly specialist and
not necessarily relevant to everyday clinical practice. Furthermore, while
genetic disorders were viewed as representing a small minority of the
total clinical load, it is now becoming clear that the opposite is true:
few clinical conditions are totally without some genetic influence.
Eli Hatchwell
Cold Spring Harbor Laboratory
Introduction
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Preface
There can be very few areas of medicine in which progress has been
achieved at such a rapid pace as molecular genetics. Almost every
common single-gene disorder has succumbed to the march of scientific
progress to the extent that genetic testing now plays an important role in
the investigation of almost every child who presents with one of the many
common inherited disorders which make a major contribution to pediatric
morbidity and mortality throughout the world. The rate of progress is
such that it can be difficult for even the most conscientious practitioner
to keep abreast of developments and to appreciate both the significance
and the relevance of some of the major discoveries of recent years.
In writing this book we would like to offer our thanks to colleagues who
have provided photographs, and to Mrs Diane Castledine for secretarial
assistance. Above all we would like to express our gratitude to, and
admiration for, the many children and families who, over the years,
have taught us so much more than they could possibly have learned
from us.
Mohnish Suri
Ian D Young
Preface
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Contents
1. Progressive Ataxias and Neurologic Disorders 1
Ataxia–Telangiectasia 2
Duchenne Muscular Dystrophy 4
Facioscapulohumeral Muscular Dystrophy 7
Friedreich Ataxia 8
Hereditary Motor and Sensory Neuropathy 10
Limb-girdle Muscular Dystrophy 18
Myotonic Dystrophy 23
Spinal Muscular Atrophy 27
3. Disorders of Vision 69
Aniridia 70
Bardet–Biedl Syndrome 72
Juvenile Retinoschisis 74
Leber Congenital Amaurosis 75
Norrie Disease 79
Rieger Syndrome 80
4. Hearing Disorders 83
Nonsyndromal Hearing Loss 84
Hearing Loss due to Connexin 26 Gene Defect 85
Pendred Syndrome 86
Usher Syndrome 87
Waardenburg Syndrome 90
Contents
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Contents
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1
1. Progressive Ataxias and Neurologic Disorders
Ataxia–Telangiectasia 2
Duchenne Muscular Dystrophy 4
Facioscapulohumeral Muscular Dystrophy 7
Friedreich Ataxia 8
Hereditary Motor and Sensory Neuropathy 10
Limb-girdle Muscular Dystrophy 18
Myotonic Dystrophy 23
Spinal Muscular Atrophy 27
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Ataxia–Telangiectasia
(also known as: AT; Louis-Bar syndrome)
MIM 208900
Age of onset Most children present with ataxia between the ages of 1 and 3 years.
Chromosomal 11q22.3
location
Mutational Over 400 mutations have been described. These include small and large
spectrum deletions and insertions, as well as nonsense, missense, and splice-site
mutations. About 65%–70% of mutations result in protein truncation,
and these mutations produce no detectable protein. The remaining
2 Ataxia–Telangiectasia
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Molecular ATM has 66 exons and encodes a protein with 3,056 amino acids.
pathogenesis The ATM protein is ubiquitously expressed and has homology to yeast
and mammalian phosphatidylinositol-3 kinases, which are involved in
signal transduction, cell cycle control, and DNA repair. It is believed that
the ATM protein phosphorylates several other proteins, including p53,
ABL, BRCA1, TERF1, RAD9, and nibrin (the protein product of the gene
for Nijmegen breakage syndrome, MIM 251260), after cell exposure to
ionizing radiation. This delays the progression of the cell through the cell
cycle at the G1/S checkpoint, allowing the cell to repair DNA damage
before entering the S phase. Without ATM protein the cell would be able
to progress to the S phase without repairing the DNA damage sustained
by radiation exposure, which could predispose to the development of
cancer. The molecular pathogenesis of the neurocutaneous phenotype
of AT is unknown.
MIM 310200
Clinical features This condition mainly affects males, who present with delayed
motor-developmental milestones, proximal muscle weakness with
pseudohypertrophy of some muscles, particularly the calves (see
Figure 2), and cardiomyopathy. The muscle weakness is progressive.
In classical cases, loss of ambulation occurs before the age of 12 years
and death occurs in the twenties. Intermediate forms of DMD exist
in which progression is slower, with loss of ambulation occurring
between 11 and 16 years of age. Learning difficulties are seen in
approximately 60% of patients. Death is usually due to respiratory
infection or cardiomyopathy. About 2.5% of female carriers are
symptomatic (manifesting carriers).
Age of onset Usually in the first year of life, although diagnosis is often delayed.
Chromosomal Xp21.2
location
Molecular DMD is the largest known gene in the human genome. It is 2.4 Mb
pathogenesis in size and composed of 79 exons. It encodes a large, rod-shaped
cytoskeletal protein made up of 3,685 amino acids. The dystrophin
protein has an actin-binding domain, two calpain-homology domains,
22 spectrin repeats, one WW domain (a short domain of about 40 amino
acids that contains two tryptophan residues that are spaced 20–23 amino
acids apart – the term WW derives from the two tryptophan residues,
as the single letter code for tryptophan is W) and one ZZ-type zinc finger
domain. The gene is subject to alternative splicing, and there are at
least four isoforms of dystrophin. These include a muscle (M) isoform,
a brain (B) isoform, and a cerebellar Purkinje (CP) isoform.
Dystrophin is expressed in several tissues and plays an important role
in anchoring the cytoskeleton to the plasma membrane. In muscle,
dystrophin links the sarcolemmal cytoskeleton to the extracellular matrix.
It is thought to protect the sarcolemma during muscular contractions.
Mutations that result in the DMD phenotype are associated with protein
truncation or loss of the translational reading frame. These mutations
result in the absence of dystrophin.
Mutations that maintain the translational reading frame result in the
phenotype of Becker muscular dystrophy (MIM 300376). These
Clinical features This is a slowly progressive muscular dystrophy. The affected patient
usually presents with facial weakness, shoulder-girdle weakness and
wasting, and scapular winging. Later, there is involvement of feet
and hip-girdle dorsiflexors. There is often striking wasting of the neck
muscles and the muscles of the upper arm. Retinal vasculopathy and
high-frequency sensorineural hearing loss are also recognized features.
Mutational Most cases of FSHMD are type 1A. Although the gene for this
spectrum condition has not yet been identified, almost all patients have a
chromosomal rearrangement in the subtelomeric region of the long
arm of chromosome 4 (4q35). This region contains a polymorphic
3.3-kb repeat element termed D4Z4. In the general population, the
number of D4Z4 repeats varies from 10 to more than 100. Affected
individuals have a deletion in this region that reduces the number
of D4Z4 repeats to less than 10. This reduction is the basis of
a diagnostic molecular genetic test for FSHMD type 1A.
Molecular Unknown. It has been suggested that deletion of the D4Z4 repeat
pathogenesis sequences could interfere with the expression of a gene located some
distance away on the long arm of chromosome 4 by a “position effect”.
Recent work suggests that an element within the D4Z4 repeat sequence
specifically binds a multiprotein complex that mediates transcriptional
repression of genes at 4q35. Deletion of D4Z4 sequences below a certain
number could result in a reduction in the number of repressor complexes.
Friedreich Ataxia
MIM 229300 (Friedreich ataxia 1)
601992 (Friedreich ataxia 2)
Clinical features This is the most common cause of cerebellar ataxia in childhood.
Affected children present with dysarthria and progressive ataxia of
their gait. Neurologic examination demonstrates weakness of the
lower limbs, absent knee and ankle jerks, extensor plantar reflexes,
decreased position and vibration sense in legs, positive Romberg
sign, and pes cavus. Other features include scoliosis, diabetes
mellitus, optic atrophy, and deafness. Nerve conduction studies
show reduced or absent sensory action potentials, but normal
motor-nerve conduction velocities. Echocardiograms show
features of hypertrophic cardiomyopathy in 70% of patients.
Age of onset Usually between 5 and 15 years of age. Almost all cases present
before the age of 25 years, although onset after this age has also
been described (late-onset form).
Epidemiology The estimated population prevalence is 1–2 per 50,000. The carrier
(heterozygote) frequency is between 1 in 60 and 1 in 110.
8 Friedreich Ataxia
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Mutational FRDA has seven exons that are subject to alternative splicing. The major
spectrum protein product of this gene is the 210-amino-acid protein frataxin.
This is encoded by exons 1–4 spliced to exon 5A. The majority of
patients (~96%) are homozygous for an expansion of a GAA triplet
repeat motif in the first intron of the gene. The normal number of
GAA triplet repeats is 9–22. In affected individuals the size range is
66–1,700 repeats, with most patients having 600–1,200 repeats.
The remaining patients are compound heterozygotes for a pathogenic
GAA repeat expansion in one FRDA allele and an inactivating mutation
(nonsense or frame-shift) in the other allele.
The hereditary motor and sensory neuropathies are a clinically and genetically heterogeneous
group of disorders. Four main clinical phenotypes can be recognized: classical HMSN,
Dejerine–Sottas syndrome, congenital hypomyelinating neuropathy (CHN), and hereditary
neuropathy with liability to pressure palsies (HNPP). Each of these phenotypes is discussed
in turn. Table 1 summarizes the classification, distinguishing clinical features, inheritance
patterns, and molecular genetics of the various forms of HMSN.
Age of onset HMSN I and II usually present in the first decade of life, but onset can
also occur in adult life.
HMSN III usually presents in the first 2 years of life.
HMSN IV usually presents in the first decade of life.
CHN usually presents at birth or during early infancy.
HNPP usually presents in adult life.
HMSN IA 118220 Slow NCVs Autosomal 17p11.2 PMP22 Peripheral myelin A 1.5-Mb duplication of
dominant protein 22 17p11.2 including PMP22
is the most common
cause of HMSN IA. Point
mutations in this gene
have also been identified,
including missense and
frame-shift mutations
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HMSN IB 118200 Slow NCVs Autosomal 1q22 MPZ Myelin protein zero Missense mutations
dominant
HMSN IC 601098 Slow NCVs Autosomal 16p12–p13.3 LITAF Lipopolysaccharide- Missense mutations
dominant induced tumor
necrosis factor-α factor
7/9/04
HMSN ID 607678 Very slow NCVs Autosomal 10q21.1–q22.1 EGR2 Early growth Missense mutation
13
normal NCVs
Classification MIM Distinguishing Inheritance Chromosomal Gene Product Mutational spectrum
14
clinical features location
HMSN IIE 607684 Normal or slightly Autosomal 8p21 NEFL Neurofilament protein, Missense mutations
reduced NCVs dominant light polypeptide
MSN IIF 606595 Normal NCVs Autosomal 7q11–q21 Unknown Unknown Unknown
dominant
HMSN IIG 607706 Normal or slightly Autosomal 8q13–q21.1 GDAP1 Ganglioside-induced Nonsense mutations
reduced NCVs with recessive differentiation-
vocal cord paresis associated protein 1
HMSN IIH 607731 – Autosomal 8q21.3 Unknown Unknown Unknown
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recessive
HMSN II I 607677 Normal or slightly Autosomal 1q22 MPZ Myelin protein zero Missense mutations (two
reduced NCVs dominant patients had three different
missense mutations in
7/9/04
and deafness
HMSN IIK 607831 Slightly reduced NCVs Autosomal 8q13–q21.1 GDAP1 Ganglioside-induced Homozygosity for
with onset in early recessive differentiation- Ser194Stop
childhood associated protein 1 mutation
HMSN III/ 145900 See text Autosomal 17p11.2 PMP22 Peripheral myelin Missense and
Page 14
HMSN IVA 214400 Both a demyelinating Autosomal 8q13–q21.1 GDAP1 Ganglioside-induced Demyelinating type:
and an axonal form recessive differentiation- nonsense and
are recognized. associated missense mutations
Axonal type: protein 1 Axonal type:
patients can have nonsense, missense, and
vocal cord paresis frame-shift mutations
HMSN IVB1 601382 Slow NCVs Autosomal 11q22 MTMR2 Myotubularin-related Nonsense, frame-shift,
recessive protein 2 and splice-site mutations
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HMSN IVB2 604563 Slow NCVs Autosomal 11p15 SBF2 SET-binding factor 2 Nonsense mutations
recessive and in-frame deletion
HMSN IVC 601596 Slow NCVs Autosomal 5q32 Unknown Unknown Unknown
7/9/04
recessive
HNPP 162500 See text Autosomal 17p11.2 PMP22 Peripheral myelin Over 85% of patients
dominant protein 22 have a 1.5-Mb deletion
of 17p11.2, including
PMP22. The remainder
Page 15
Table 1. Hereditary motor and sensory neuropathies (HMSNs): classifications, inheritance patterns, and molecular genetics. CHN: congenital hypomyelinating
neuropathy; HNPP: hereditary neuropathy with liability to pressure palsies; NCV: nerve conduction velocity.
15
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Genetic diagnosis PMP22, MPZ, and CX32 mutation analysis is available from several
and counseling diagnostic laboratories. However, testing for mutations in the other
genes is not routinely available at this time. All autosomal dominant
and sporadic cases of HMSN I should be tested for mutations in
PMP22 and MPZ. Patients from X-linked dominant HMSN families,
sporadic male cases with HMSN I, and sporadic female cases with
HMSN II should also be tested for mutations in CX32.
The LGMDs are a group of hereditary muscle disorders that predominantly affect the shoulder
and pelvic girdles. There are several autosomal dominant (LGMD1) and autosomal recessive
(LGMD2) forms with remarkable locus heterogeneity. Table 2 summarizes the classification,
distinguishing clinical features, inheritance pattern, and molecular genetics of the various
forms of LGMD.
Clinical features The LGMDs are a clinically and genetically heterogeneous group
of disorders. Affected individuals present with proximal weakness
of the upper and lower limbs.
Epidemiology LGMDs affect all populations, but their incidence varies in different
populations. Autosomal dominant forms only account for about 10% of
cases. Mutations in one of the sarcoglycan genes (sarcoglycanopathies)
can be seen in 8%–25% of patients with LGMD. In most populations
the most frequently seen form of LGMD is LGMD2A, which accounts
for 40%–45% of cases. However, LGMD2I is probably the most
common form of LGMD in the UK.
Molecular TTID is composed of 10 exons and codes for a structural muscle protein
pathogenesis with 498 amino acids called titin immunoglobulin domain protein or
myotilin. This is a thin, filament-associated, Z-disc protein that binds to
α-actinin, F-actin, and filamin c. It cross-links actin filaments and controls
sarcomere assembly, and is believed to play an important role in the
stabilization and anchorage of thin filaments. Mutations in TTID probably
cause LGMD by interfering with the proper organization of Z-discs.
LMNA contains 10 exons and encodes two proteins as a result of
alternative splicing of its exons. These proteins include lamin A
(664 amino acids) and lamin C (572 amino acids). Both lamins
20
clinical onset location
features
LGMD1A 159000 Dysarthria 18–35 years Autosomal 5q31 TTID Titin immunoglobulin- Missense mutations
dominant domain protein or
myotilin
LGMD1B 159001 Cardiac involvement, 4–38 years Autosomal 1q21.2 LMNA Lamin A/C Missense and splice-site
particularly cardiac dominant mutations, 3-bp deletion
conduction defects
LGMD1C 601253 Muscle cramps, ~5 years Autosomal 3p25 CAV3 Caveolin 3 Missense mutations
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dominant
LGMD with 602067 Dilated 15–20 years Autosomal 6q23 Unknown Unknown Unknown
dilated cardiomyopathy dominant
cardiomyopathy with cardiac
16:04
conduction
defects
LGMD2A 253600 Contractures of 8–15 years Autosomal 15q15.1–q21.1 CAPN3 Calpain 3 Missense and splice-site
tendo-Achilles and recessive mutations, small deletions
Page 20
LGMD2E 604286 None Childhood Autosomal 4q12 SGCB β-Sarcoglycan Missense and protein-
recessive truncating mutations
LGMD2F 601287 Cardiomyopathy, 4–10 years Autosomal 5q33 SGCD δ-Sarcoglycan Frame-shift, missense,
very severe clinical recessive and nonsense mutations,
course with loss of 3-bp deletion
ambulation between
9–16 years and
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death between
9–19 years
LGMD2G 601954 Foot drop, proximal 9–15 years Autosomal 17q12 TCAP Telethonin Nonsense and
and distal lower recessive frame-shift mutations
7/9/04
limb weakness
levels, rimmed
vacuoles on
muscle biopsy
LGMD2H 254110 Weakness of facial, 8–27 years Autosomal 9q31–q34.1 TRIM32 Tripartite motif- All patients are
Page 21
Table 2. Limb-girdle muscular dystrophies (LGMDs): classification, clinical features, and molecular genetics. CK: creatine kinase.
21
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SGCB has only six exons and encodes a protein with 318 amino acids,
which is called β-sarcoglycan (43-kDa DAG). SGCD has nine exons
and encodes δ-sarcoglycan (35-kDa DAG), which has 290 amino acids.
SGCG is composed of eight exons and codes for γ-sarcoglycan (35-kDa
DAG). This protein also has 290 amino acids. The sarcoglycans are
transmembrane proteins that are an important component of the
dystrophin–glycoprotein complex at the sarcolemmal membrane.
The components of this complex link dystrophin inside the sarcolemma
to the laminin α2 chain of merosin and other proteins in the extracellular
matrix. The dystrophin–glycoprotein complex is believed to play a
critical role in maintaining the integrity of the sarcolemmal membrane,
particularly during muscle contraction. Therefore, absence or deficiency
of the critical components of this complex can result in the phenotype
of muscular dystrophy. Heterozygous mutations in SGCD can also
cause one form of dilated cardiomyopathy type 1L (MIM 606685).
TCAP is a small gene with only two exons. It encodes a structural
sarcomeric protein called titin cap or telethonin. This protein has
167 amino acids and localizes to the Z-disc of adult skeletal muscle.
TRIM32 has two exons and encodes a protein with 653 amino acids.
Its protein product, TRIM 32 protein, is thought to be an E3 ubiquitin
ligase. The mechanism by which mutations in this gene result in the
LGMD phenotype is unknown.
FKRP is composed of four exons and encodes fukutin-related protein,
which has 495 amino acids. Fukutin-related protein is probably a
Golgi-resident glycosyltransferase that is involved in the glycosylation
of α-dystroglycan. This protein links the dystrophin–glycoprotein
complex to various extracellular proteins, including the laminin α2
chain of merosin, neurexin, and agrin. Deficiency of fukutin-related
protein probably results in muscular dystrophy due to aberrant
glycosylation of α-dystroglycan.
Genetic diagnosis The diagnosis of LGMD is made by the combination of clinical features,
and counseling immunohistochemistry on a muscle biopsy sample, and molecular genetic
analysis. Immunohistochemistry and genetic testing are only available
from a few specialized laboratories. Interpretation of the results of muscle
immunohistochemistry is difficult and should only be carried out by
laboratories experienced in the use of this technique. It is important to
rule out facioscapulohumeral muscular dystropy and Emery–Dreifuss
Myotonic Dystrophy
(also known as: MD; dystrophia myotonica; Steinert disease.
Includes proximal myotonic myopathy [PROMM])
Clinical features Four forms of MD1 can be recognized based on age of onset and clinical
features. These include a mild form, an adult or classical form, a congenital
form, and a childhood or juvenile form. Patients with mild MD usually
present with presenile cataracts. The classical form of MD is a multisystem
disorder. Symptoms include: muscle weakness and wasting, grip and
percussion myotonia, cardiac arrhythmias that can present as syncope
or sudden death, gastrointestinal problems, cataracts, an increased
incidence of diabetes mellitus, and testicular atrophy in males.
The distribution of muscle weakness and wasting is characteristic and
is responsible for the well-recognized facial features of this condition.
These include frontal balding, ptosis, facial weakness, bitemporal
narrowing (due to wasting of the temporalis muscles), wasting of the jaw
muscles, and a slender neck due to wasting of the sternomastoids. Early
appearance and progression of male pattern baldness is also a feature.
Distal limb muscles tend to be affected earlier than proximal muscles.
Congenital MD is the most severe form of this disease and is the result
of anticipation. It can present antenatally as reduced fetal movements
and polyhydramnios, or in the neonatal period as severe hypotonia,
respiratory distress (often requiring ventilation), feeding difficulties,
facial weakness, cardiac problems (cardiomyopathy or arrhythmias),
and talipes or arthrogryposis. A chest X-ray will often show thin ribs.
Many patients with congenital MD die in childhood. Survivors show
delayed development and have learning difficulties and characteristic
facies (facial diplegia, an open-mouthed appearance with a tented
upper lip, and a prominent, everted lower lip).
A childhood or juvenile form of this condition has also been described.
These patients usually present between 1 and 10 years of age with
speech and language delay and learning difficulties, although some
patients present with muscle weakness and myotonia at school age.
MD2 and PROMM are probably a single entity as they have similar
clinical features and are allelic or have very closely linked genes.
Patients with these conditions present with slowly progressive proximal
muscle weakness, mild myotonia, cardiac arrhythmias, and late-onset
cataracts. White matter changes have been described in some families.
Features that help to distinguish these conditions from the classical form
of MD1 include the absence of facial weakness and the characteristic
facial features that are seen in patients with classical MD, absent
or minimal distal limb weakness, and the presence of myalgia.
Age of onset The mild form of MD1 presents in late adult life, the classical form
presents in late adolescence or early adult life, the congenital form
presents antenatally or in the neonatal period, and the childhood
or juvenile form presents in early childhood.
MD2 and PROMM present in adulthood.
24 Myotonic Dystrophy
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Molecular DMPK has 15 exons and produces two main protein isoforms of 71 kDa
pathogenesis and 80 kDa as a result of alternative splicing. Both of these isoforms are
predominantly expressed in skeletal and cardiac muscle. The precise
mechanism by which the CTG repeat expansion causes MD1 is unknown.
Interest has focused on the possibility that the allele with the CTG repeat
expansion produces mRNA that inappropriately binds to proteins via
CUG repeats (thymidine is replaced by uridine in RNA). One particular
protein (CUG-binding protein) is involved in processing mRNA from
Genetic diagnosis Genetic testing for MD1 is widely available, so all patients with MD
and counseling should have genetic testing to confirm the diagnosis. Patients whose
clinical features are suggestive of MD but who test negative for the
CTG repeat expansion in DMPK are likely to have MD2/PROMM or an
alternative myotonic disorder. Counseling is on the basis of autosomal
dominant inheritance. Women with MD1 should be told that their
children could be affected with congenital MD as a result of anticipation.
Women who have neuromuscular disease or who have previously had
an affected child with congenital MD are particularly at risk of having
a baby with congenital MD. Patients with MD should be told that they
are at risk of developing cardiac arrhythmias, cataracts, and diabetes
mellitus, and they should be under the care of a physician. They should
also be told about the complications of general anesthesia, including
malignant hyperthermia and postanesthetic apnea. Patients should
be asked to carry an alert card or bracelet. Presymptomatic/predictive
genetic testing can be offered to those from families where a CTG repeat
expansion has been previously documented in an affected individual
(and who therefore have a 50% risk of being affected). Prenatal diagnosis
is also available by testing DNA extracted from either a chorionic villus
sample or cultured amniocytes for the CTG repeat expansion.
Genetic testing for MD2/PROMM is only available on a research basis.
Counseling is as for autosomal dominant inheritance. Anticipation
does occur, but is milder than that seen in MD1.
26 Myotonic Dystrophy
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Clinical features Children with SMA present with generalized muscle weakness and wasting,
hypotonia, and areflexia. The muscle weakness begins proximally,
and characteristically involves the intercostal muscles and later the
diaphragm, but spares the extraocular muscles and facial muscles.
Fasciculation of the tongue and other muscles is a helpful diagnostic
clue. Childhood SMA is classified into three types based on age of onset,
extent of motor development, and prognosis. The most severe form is
SMA type I. Children with this condition never learn to sit and usually
die by the age of 2 years. Patients with SMA type II learn to sit without
support, but never learn to walk unaided. The prognosis is variable, with
some patients dying in childhood and others surviving to adulthood.
Patients with SMA type III are able to walk independently. They have
slowly progressive muscle weakness, and survive into adulthood.
Diagnosis can be confirmed by electromyography (which shows a
neurogenic pattern) and by muscle biopsy (which shows grouped
atrophy of both type I and II fibers, with hypertrophy of type I fibers).
Epidemiology The incidence of all forms of SMA is about 1 in 10,000 live births.
SMA has been described in all ethnic groups. The heterozygote (carrier)
frequency is about 1 in 50.
Chromosomal 5q12.2–q13.3
location
Mutational There are two copies of the SMN gene: a telomeric copy (SMN1)
spectrum and a centromeric copy (SMN2). There are only minor differences in
the coding sequence of these two genes. Both genes are expressed,
but SMN1 produces much higher levels of the functional full-length
transcript than SMN2. Because of the homology between these two
genes, gene conversion events are frequent, resulting in the conversion
of SMN1 to SMN2.
The vast majority of patients with SMA (~96%) are homozygous for a
deletion or gene conversion of SMN1. A small number of patients (~4%)
are compound heterozygotes with a deletion or gene conversion affecting
one SMN1 allele and a different mutation in the other allele. Other
mutations in SMN1 are rare, but can include point mutations (mostly
missense mutations and splice-site mutations) and frame-shift mutations.
The presence of multiple copies of SMN2 in patients homozygous for
a deletion or gene conversion of SMN1 can modify the phenotype and
lead to less severe disease (SMA types II or III). Other genetic modifiers
of the phenotype have also been described (eg, splicing mechanisms
of the SMN2 gene and deletion of the H4F5 gene that lies upstream
of SMN1).
Molecular The protein product of the SMN1 and SMN2 genes is expressed in
pathogenesis several areas, including the central nervous system, skeletal muscle,
heart, liver, kidneys, lungs, thymus, and pancreas. Within the central
nervous system it is expressed in the anterior horn cells of the spinal
cord. The SMN protein is localized to the cytoplasm and nucleus.
In the nucleus it is localized in small, discrete, dot-like structures called
“gems”. It interacts with several small nuclear ribonucleoproteins and
appears to have an important role in the generation of the pre-mRNA
splicing machinery, and, therefore, in mRNA processing in the cell.
Although SMN1 is ubiquitously expressed, loss of function of this
gene only results in degeneration of spinal motor neurons because
these cells are believed to need high levels of SMN protein to survive.
Genetic diagnosis Genetic testing for SMA is routinely available. Carrier testing for
and counseling SMA is also available from diagnostic laboratories. Counseling is
on an autosomal recessive basis. Prenatal diagnosis can be offered
to parents of children with SMA in whom the diagnosis has been
confirmed by genetic testing.
2
2. Cerebral Malformations and Mental
Retardation Syndromes
Angelman Syndrome 30
Fragile X Syndrome 34
Holoprosencephaly 36
Hunter Syndrome 40
Huntington Disease 41
Lesch–Nyhan Syndrome 43
Lissencephaly 45
Lowe Syndrome 52
Neuronal Ceroid Lipofuscinosis 53
Pelizaeus–Merzbacher Syndrome 57
Prader–Willi Syndrome 59
Rett Syndrome 61
X-linked Adrenoleukodystrophy 62
X-linked α-Thalassemia and Mental Retardation Syndrome 64
X-linked Hydrocephalus 66
P481_GenForPed_Complete.qxd 7/9/04 16:04 Page 30
Angelman Syndrome
(also known as: AS; happy puppet syndrome)
MIM 105830
Clinical features Affected children show severe developmental delay with very limited
speech, ataxia, and easily provoked laughter; they have a happy
demeanor and excitable personality. Convulsions occur in 80%,
usually with onset in early childhood. Other common features include
microcephaly, drooling, prognathism, hypopigmentation, and a scoliosis
(this can progress and require surgical correction). Life expectancy
is relatively normal.
Age of onset The diagnosis is usually made in early childhood. With the benefit
of hindsight, it often becomes apparent that problems were first
evident in infancy.
Chromosomal 15q11–q13
location
30 Angelman Syndrome
P481_GenForPed_Complete.qxd 7/9/04 16:04 Page 31
M P P P M
Centromere qter
SNRPN
UBE3A
AS PWS
antisense UBE3A
IC IC
Figure 1. Simplified diagram of the PWS/AS (Prader–Willi syndrome/Angelman syndrome) critical region
on chromosome 15. In the maternal chromosome the AS imprinting center (IC) is active and methylates
(silences) the SNRPN promoter. UBE3A is expressed. In the paternal chromosome the PWS IC activates
SNRPN and other adjacent genes, including antisense UBE3A, which silences UBE3A. M and P refer to
maternally and paternally derived patterns of expression, respectively.
Genotype–phenotype Children with class I microdeletions are the most severely affected,
correlation with the highest incidence of microcephaly and seizures and the
most severe learning disability, with absent speech. They alone show
hypopigmentation, almost certainly because of haploinsufficiency for
the P gene, which is located at 15q11–q13 and deficiency of which
causes type II oculocutaneous albinism (MIM 203200). The next most
severely affected children are those with class IV UBE3A mutations.
These children often have microcephaly and seizures, but demonstrate
better developmental progress than children in class I. Children with
UPD (class II) and imprinting mutations (class III) are the least severely
affected, with a low incidence of microcephaly and seizures, but they
still show severe learning disability with only very limited speech.
Genetic diagnosis Diagnosis in classes I–III can be made by methylation analysis using
and counseling a methylation-sensitive restriction enzyme and a probe from the PWS/AS
critical region (see Figure 2). This reveals the presence of only a paternal
band. Microdeletion analysis by fluorescence in situ hybridization (FISH)
identifies all class I cases (see Figure 3). If a chromosomal abnormality
is identified, parental chromosome studies should be undertaken.
Paternal UPD (class II) is identified by restriction fragment length
polymorphism or microsatellite analysis. Class IV cases (UBE3A
mutations) can only be detected by mutation analysis (usually single-
strand conformation polymorphism screening followed by direct
sequencing). Most microdeletions identified by FISH are de novo
and have a low risk of recurrence of less than 1%, which is attributable
to maternal germ-line mosaicism. The recurrence risk for paternal UPD
cases (class II) is negligible. If an imprinting center microdeletion or
UBE3A mutation is present in the affected child’s mother then the
recurrence risk is 50%; otherwise, the recurrence risk is low but
not negligible because of possible maternal germ-line mosaicism.
32 Angelman Syndrome
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It may be contended, too, that while it does violence to our established
way of thinking, this mode of interpreting the facts is not without its
difficulties. Something seems to be gained by restricting the application
of the title individual, to organisms which, being in all respects fully
developed, possess the power of producing their kind after the ordinary
sexual method, and denying this title to those incomplete organisms
which have not this power. But the definition does not really establish
this distinction for us. On the one hand, we have cases in which, as in
the working bee, the whole of the germ-product is aggregated into a
single organism; and yet, though an individual according to the
definition, this organism has no power of reproducing its kind. On the
other hand, we have cases like that of the perfect Aphis, where the
organism is but an infinitesimal part of the germ product, and yet has
that completeness required for sexual reproduction. Further, it might be
urged with some show of reason, that if the conception of individuality
involves the conception of completeness, then, an organism which
possesses an independent power of reproducing itself, being more
complete than an organism in which this power is dependent on the aid
of another organism, is more individual.
In the passages just referred to it was said that the external layer or
cell-wall is a non-essential, inanimate part produced by the animate
contents. Itself a product of protoplasmic action, it takes no part in
protoplasmic changes, and may therefore here be ignored.
§ 74b. One of the complexities within complexities was disclosed when
it was found that the protoplasm itself has a complicated structure.
Different observers have described it as constituted by a network or
reticulum, a sponge-work, a foam-work. Of these the first may be
rejected; since it implies a structure lying in one plane. If we accept the
second we have to conceive the threads of protoplasm, corresponding
to the fibres of the sponge, as leaving interstices filled either with liquid
or solid. They cannot be filled with a continuous solid, since all motion
of the protoplasm would be negatived; and that their content is not
liquid seems shown by the fact that its parts move about under the
form of granules or microsomes. But the conception of moving granules
implies the conception of immersion in a liquid or semi-liquid substance
in which they move—not a sponge-work of threads but a foam-work,
consisting everywhere of septa interposed among the granules. This is
the hypothesis which sundry microscopists espouse, and which seems
mechanically the most feasible: the only one which consists with the
"streaming" of protoplasm. Ordinarily the name protoplasm is applied to
the aggregate mass—the semi-liquid, hyaline substance and the
granules or microsomes it contains.
Respecting this small body we have further to note that, like the cell as
a whole, it multiplies by fission, and that the bisection of it terminates
the resting or growing stage and initiates those complicated processes
by which two cells are produced out of one: the first step following the
fission being the movement of the halves, with their respective
completed asters, to the opposite sides of the nucleus.
§ 74c. With the hypothesis, now general, that the nucleus or kernel of a
cell is its essential part, there has not unnaturally grown up the dogma
that it is always present; but there is reason to think that the evidence
is somewhat strained to justify this dogma.
In the first place, beyond the cases in which the nucleus, though
ordinarily invisible, is said to have been rendered visible by a re-agent,
there are cases, as in the already-named Archerina, where no re-agent
makes one visible. In the second place, there is the admitted fact that
some nuclei are diffused; as in Trachelocerca and some other Infusoria.
In them the numerous scattered granules are supposed to constitute a
nucleus: an interpretation obviously biassed by the desire to save the
generalization. In the third place, the nucleus is frequently multiple in
cells of low types; as in some families of Algæ and predominantly
among Fungi. Once more, the so-called nucleus is occasionally a
branching structure scarcely to be called a "kernel."
The facts as thus grouped suggest that the nucleus has arisen in
conformity with the law of evolution—that the primitive protoplast,
though not homogeneous in the full sense, was homogeneous in the
sense of being a uniformly granular protoplasm; and that the
protoplasts with diffused nuclei, together with those which are multi-
nucleate, and those which have nuclei of a branching form, represent
stages in that process by which the relatively homogeneous protoplast
passed into the relatively heterogeneous one now almost universal.
Many parts of this complex process are still imperfectly understood, and
various opinions concerning them are current. But the essential facts
are that this peculiar substance, the chromatin, at other times existing
dispersed, is, when division is approaching, gathered together and dealt
with in such manner as apparently to insure equal quantities being
bequeathed by the mother-cell to the two daughter-cells.
The theory espoused by some, that the nucleus is the regulative organ
of the cell, is met by difficulties. One of them is that, as pointed out in
the chapter on "Structure," the nucleus, though morphologically central,
is not central geometrically considered; and that its position, often near
to some parts of the periphery and remote from others, almost of itself
negatives the conclusion that its function is directive in the ordinary
sense of the word. It could not well control the cytoplasm in the same
ways in all directions and at different distances. A further difficulty is
that the cytoplasm when deprived of its nucleus can perform for some
time various of its actions, though it eventually dies without reproducing
itself.
For the hypothesis that the nucleus is a vehicle for transmitting
hereditary characters, the evidence seems strong. When it was shown
that the head of a spermatozoon is simply a detached nucleus, and that
its fusion with the nucleus of an ovum is the essential process initiating
the development of a new organism, the legitimate inference appeared
to be that these two nuclei convey respectively the paternal and
maternal traits which are mingled in the offspring. And when there
came to be discerned the karyokinesis by which the chromatin is, during
cell-fission, exactly halved between the nuclei of the daughter-cells, the
conclusion was drawn that the chromatin is more especially the agent of
inheritance. But though, taken by themselves, the phenomena of
fertilization seem to warrant this inference, the inference does not seem
congruous with the phenomena of ordinary cell-multiplication—
phenomena which have nothing to do with fertilization and the
transmission of hereditary characters. No explanation is yielded of the
fact that ordinary cell-multiplication exhibits an elaborate process for
exact halving of the chromatin. Why should this substance be so
carefully portioned out among the cells of tissues which are not even
remotely concerned with propagation of the species? If it be said that
the end achieved is the conveyance of paternal and maternal qualities
in equal degrees to every tissue; then the reply is that they do not seem
to be conveyed in equal degrees. In the offspring there is not a uniform
diffusion of the two sets of traits throughout all parts, but an irregular
mixture of traits of the one with traits of the other.
In Chapters III and IIIA of the First Part, reasons were given for
concluding that in the animal organism nitrogenous substances play the
part of decomposing agents to the carbo-hydrates—that the molecular
disturbance set up by the collapse of a proteid molecule destroys the
equilibrium of sundry adjacent carbo-hydrate molecules, and causes
that evolution of energy which accompanies their fall into molecules of
simpler compounds. Here, if the foregoing argument is valid, we may
conclude that this highly complex phosphorized compound which
chromatin contains, plays the same part to the adjacent nitrogenous
compounds as these play to the carbo-hydrates. If so, we see arising a
stage earlier that "general physiological method" illustrated in § 23f. It
was there pointed out that in animal organisms the various structures
are so arranged that evolution of a small amount of energy in one, sets
up evolution of a larger amount of energy in another; and often this
multiplied energy undergoes a second multiplication of like kind. If this
view is tenable, we may now suspect that this method displayed in the
structures of the Metazoa was initiated in the structures of the
Protozoa, and consequently characterizes those homologues of them
which compose the Metazoa.
But how does all this consist with the conclusion that the chromatin
conveys hereditary traits—that it is the vehicle in which the
constitutional structure, primarily of the species and secondarily of
recent ancestors and parents, is represented? To this question there
seems to be no definite answer. We may say only that this second
function is not necessarily in conflict with the first. While the unstable
units of chromatin, ever undergoing changes, diffuse energy around,
they may also be units which, under the conditions furnished by
fertilization, gravitate towards the organization of the species. Possibly it
may be that the complex combination of proteids, common to
chromatin and cytoplasm, is that part in which the constitutional
characters inhere; while the phosphorized component, falling from its
unstable union and decomposing, evolves the energy which, ordinarily
the cause of changes, now excites the more active changes following
fertilization. This suggestion harmonizes with the fact that the fertilizing
substance which in animals constitutes the head of the spermatozoon,
and in plants that of the spermatozoid or antherozoid, is distinguished
from the other agents concerned by having the highest proportion of
the phosphorized element; and it also harmonizes with the fact that the
extremely active changes set up by fertilization are accompanied by
decrease of this phosphorized element. Speculation aside, however, we
may say that the two functions of the chromatin do not exclude one
another, but that the general activity which originates from it may be
but a lower phase of that special activity caused by fertilization.[27]
A test fact remains. Sometimes the first polar body extruded undergoes
fission while the second is being formed. This can have nothing to do
with reducing the number of chromosomes in the ovum.
Unquestionably, however, this change is included with the preceding
changes in one transaction, effected by one influence. If, then, it is
irrelevant to the decrease of chromosomes, so must the preceding
changes be irrelevant: the hypothesis lapses. Contrariwise this fact
supports the view suggested above. That extrusion of a polar body is a
process of cell-fission is congruous with the fact that another fission
occurs after extrusion. And that this occurs irregularly shows that the
vital activities, seen in cell-growth and cell-multiplication, now succeed
in producing further fission of the dwarfed cell and now fail: the
energies causing asexual multiplication are exhausted and there arises
the state which initiates sexual multiplication.
And now ending thus the account of genesis under its histological
aspect, we pass to the account of genesis under its wider and more
significant aspects.
CHAPTER VII.
GENESIS.
§ 75. Having, in the last chapter but one, concluded what constitutes an
individual, and having, in the last chapter, contemplated the histological
process which initiates a new individual, we are in a position to deal
with the multiplication of individuals. For this, the title Genesis is here
chosen as being the most comprehensive title—the least specialized in
its meaning. By some biologists Generation has been used to signify
one method of multiplication, and Reproduction to signify another
method; and each of these words has been thus rendered in some
degree unfit to signify multiplication in general.
Here the reader is indirectly introduced to the fact that the production
of new organisms is carried on in fundamentally unlike ways. Up to
quite recent times it was believed, even by naturalists, that all the
various processes of multiplication observable in different kinds of
organisms, have one essential character in common: it was supposed
that in every species the successive generations are alike. It has now
been proved, however, that in many plants and in numerous animals,
the successive generations are not alike; that from one generation there
proceeds another whose members differ more or less in structure from
their parents; that these produce others like themselves, or like their
parents, or like neither; but that eventually, the original form re-
appears. Instead of there being, as in the cases most familiar to us, a
constant recurrence of the same form, there is a cyclical recurrence of
the same form. These two distinct processes of multiplication, may be
aptly termed homogenesis and heterogenesis.[28] Under these heads let
us consider them.
Oviparous
or
Ovo-
Homogenesis, which is usually
viviparous
Gamogenesis
or
Viviparous
Genesis
is or
Gamogenesis
alternating
Heterogenesis, with Parthenogenesis
which is Agamogenesis or Internal
Metagenesis or
External
There are very many modes and modifications of modes in which these
cells are produced; very many modes and modifications of modes by
which they are brought into contact; and very many modes and
modifications of modes by which the resulting fertilized germs have
secured to them the fit conditions for their development. But passing
over these divergent and re-divergent kinds of sexual multiplication,
which it would take too much space here to specify, the one universal
trait is this coalescence of a detached portion of one organism with a
more or less detached portion of another.
The next general fact to be noted is that these cells whose union
constitutes the essential act of gamogenesis, are cells in which the
developmental changes have come to a close—cells which are incapable
of further evolution. Though they are not, as many cells are, unfitted for
growth and metamorphosis by being highly specialized, yet they have
lost the power of growth and metamorphosis. They have severally
reached a state of equilibrium. And while the internal balance of forces
prevents a continuance of constructive changes, it is readily overthrown
by external destructive forces. For it almost uniformly happens that
sperm-cells and germ-cells which are not brought in contact disappear.
In a plant, the egg-cell, if not fertilized, is absorbed or dissipated, while
the ovule aborts; and the unimpregnated ovum eventually decomposes:
save, indeed, in those types in which parthenogenesis is a part of the
normal cycle.
Such being the characters of these cells, and such being their fates if
kept apart, we have now to observe what happens when they are
united. In plants the extremity of the elongated pollen-cell applies itself
to the surface of the embryo-sac, and one of its nuclei having, with
some protoplasm, passed into the egg-cell, there becomes fused with
the nucleus of the egg-cell. Similarly in animals, the spermatozoon
passes through the limiting membrane of the ovum, and a mixture
takes place between the substance of its nucleus and the substance of
the nucleus of the ovum. But the important fact which it chiefly
concerns us to notice, is that on the union of these reproductive
elements there begins, either at once or on the return of favourable
conditions, a new series of developmental changes. The state of
equilibrium at which each had arrived is destroyed by their mutual
influence, and the constructive changes, which had come to a close,
recommence. A process of cell-multiplication is set up; and the resulting
cells presently begin to aggregate into the rudiment of a new organism.
Thus, passing over the variable concomitants of gamogenesis, and
confining our attention to what is constant in it, we see:—that there is
habitually, if not universally, a fusion of two portions of organic
substance which are either themselves distinct individuals, or are
thrown off by distinct individuals; that these portions of organic
substance, which are severally distinguished by their low degree of
specialization, have arrived at states of structural quiescence or
equilibrium; that if they are not united this equilibrium ends in
dissolution; but that by the mixture of them this equilibrium is
destroyed and a new evolution initiated.
§ 78. What are the conditions under which Genesis takes place? How
does it happen that some organisms multiply by homogenesis and
others by heterogenesis? Why is it that where agamogenesis prevails it
is usually from time to time interrupted by gamogenesis? A survey of
the facts discloses certain correlations which, if not universal, are too
general to be without significance.
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