ABC Transporters Overview
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ABC Transporters
A Goffeau, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
B De Hertogh, Facultés Universitaires Notre-Dame de la Paix, Namur, Belgium
ã 2013 Elsevier Inc. All rights reserved.
This article is a revision of the previous edition article by André Goffeau, Benoı̂t De Hertogh, and Philippe V. Baret, volume 1, pp. 1–5, ã 2004, Elsevier Inc.
The ABCs constitute the largest family of proteins. They are often associate with two TMDs either as four single subunits
present in all living species from Archaea to Homo sapiens. encoded within the same operon or in various combinations of
They make up to 4% of the full genome complement of bacteria fused subunits (Figure 2). Association of other proteins may
such as Escherichia coli or Bacillus subtilis. Each eukaryote occur. The most prominent associated bacterial protein is the
genome contains several dozens of ABC proteins. They are periplasmic solute-binding receptor, which in Gram-negative
recognized by a consensus nucleotide-binding domain (NBD) bacteria is found in the periplasm, and in Gram-positive bacte-
of approximately 100 amino acids which comprises a series ria is often a lipoprotein bound to the external membrane
of structural and sequence motifs illustrated in Figure 1: the surface via electrostatic interactions. The three domains of the
Walker A motif, the ABC1 signature, the Walker B motif, bacterial ABC uptake transporters, namely the periplasmic-
the Helical domain, and the P, Q-, C-, D-, and H-loops which binding receptor, the cytoplasmic NBD, and the membrane
are structural junctions between a-helices marked by a con- TMD, are believed to have arisen from a common ancestral
served proline, asparagine, cysteine, aspartate, or histidine resi- ABC transporter in which these three proteins were already
due. The ABC proteins catalyze a wide variety of physiological present. However, during evolution the sequence of the peri-
functions, many but not all of which are related to transport. plasmic solute-binding receptors diverged more rapidly than
We wish to describe the major physiological and biochemical that of the TMDs while that of NBDs remained the least diver-
functions as well as the structural properties of some of the best- gent. Thus, all NBDs are homologous, but this is not true for
known ABC transporters using as examples the multidrug the TMDs or the receptors.
exporters Sav1866 from Staphylococcus aureus, Pdr5p from In eukaryotes, two TMDs and two NBDs are often, but
Saccharomyces cerevisiae, and P-gp from H. sapiens. not always, associated in one single molecule called ‘full-
sized ABC transporter’. The topological relation between
NBDs and TMDs is variable (Figure 3); additional TM spans
Topology
occur in some systems as well as extracytoplasmic domains
of presumed regulatory function.
Each ABC transporter molecule contains, or is associated to,
one or two cytoplasmic adenosine triphosphate (ATP)-binding
domains named NBDs and one or two transmembrane Phylogeny
domains (TMDs). Each TMD comprises usually six transmem-
brane spans (TMSs) separated by the three extracytoplasmic The different families of ABC proteins transport a wide variety
loops ECL1, ECL2, and ECL3 and the two intracytoplasmic of substrates against their concentration gradient using the
loops ICL2 and ICL3. Association of one TMD to one NBD energy of ATP hydrolysis carried out by NBD. In bacteria, the
results in a half-size ABC transporter, which functions as transported substrates are either imported in or exported out
homo- or heterodimers so that the minimal functional organi- of the cell. In eukaryotes, only extracytoplasmic exporters
zation of an ABC transporter is considered to be TMD–NBD/ transporting substrates either out of the cell or into organelles
TMD–NBD or NBD–TMD/NBD–TMD. In bacteria, two NBDs are known. Within the ABC transporters, a total of 173
7
8 Bioenergetics | ABC Transporters
Out
NBD
In C N Stalk
N C
NBD1 NBD2 NBD1 NBD2
TMD
studies of human, plants, or pathogen ABC transporters would the transmembrane spans 6 and 7 in BtuCD, or through the ICL3
greatly benefit from heterologous expression of human ABC and ICL 6 in Sav1866.
transporter genes in yeast or other cells but this technology is A clear contribution of the X-ray structures is the observa-
not fully satisfactory yet. Meanwhile, knockout technology in tion that two molecules of ATP are bound at the interface of the
the mouse allows physiological analysis of the mammalian two NBDs. Each nucleotide-binding site comprises a Walker A
transporters. motif from one monomer and the ABC1 C motif from the
other monomer in a head-to-tail arrangement of the two inter-
acting NBD monomers.
Structure and Biochemical Mechanism As the folds of the various ABC transporters are highly
variable we focus on some basic structural properties of the
In 2010, over a dozen high-resolutive X-ray structures of func- bacterial Sav1866 and the mammalian P-gp multidrug drug
tional ABC transporters are available and have contributed to exporters which have been reported, respectively, by Kaspar
the emergence of a consensus view of the catalytic mechanism Locher in 2006 and Goffrey Chang in 2009.
of transport. Recent analyses at the electron microscopy level of The homodimeric Sav1866 transporter has two identical
purified bacterial (BmrA from B. subtilis) and a fungal (Pdr5p subunits, each comprising a NBD fused to a TMD made of six
from S. cerevisiae) drug efflux ABC transporter came to a transmembrane a-helices . It exports a wide series of unrelated
remarkably coherent set of conclusions. In both cases, the drugs such as the anticancer compounds doxorubicin and
basic structural unit seems to comprise four joining NBDs vinblastin. Two coupling a-helixes, located in ICL3 and ICL6,
that correspond to two full-size Pdr5p or four half-size BmrA. interact with grooves from the two NBDs. This structural motif
The NBD are related to the TMDs through four distinct stalks. is conserved in all ABC transporters but its amino acid
Each NBD is oriented at a fixed 90º angle relative to its neigh- sequence is not conserved. Individual TMS from the two
bor NBDs. This raises the possibility of concerted rotation TMDs embrace each other and form two symmetric membrane
movements of the NBDs implying a certain flexibility of the bundles each made of six mixed TMS comprising two mem-
stalks. No intramolecular or no intramembrane pores were brane a-helices from one TMD and four membrane a-helices
observed even though there is room (or chamber) between from the other TMD. A central cavity was identified between
the four stalks that join together at their NBD tips (Figure 4). the TMDs. As it faces outward, it was interpreted to represent
The nature of the stalks, TMD and NBD, was further identi- an open drug extrusion pocket.
fied by the analysis of the well-resolved structure of complete P-gp is a full size NBD–TMD–NBD–TMD transporter which
dimeric ABC bacterial and eukaryote transporters such as is responsible for multiple drug resistance of mouse and
those obtained for the phospholipid flippase MsbA from human cell and to which has been attributed failure of chemo-
E. coli and Staphylococcus typhimurum, the vitamin B12 importer treated cancer patients. The mouse P-gp was expressed in the
BtuCD from E. coli, the importer of metal-chelate HI1470/1 yeast Pichia pastoris, purified and crystallized. This 3.8 Å struc-
from Haemophilus influenzae, the drug exporter Sav1866 from ture is a nucleotide-free, inward conformation arranged in two
S. aureus, and the mammalian multidrug exporter P-gp. symmetric halves each comprising an NBD and a TM bundle.
The folds of the membrane and stalk domains were found Each TM bundle comprises six mixed TMs in which spans from
to be dissimilar in the different structures analyzed so far. the two TMDs embrace each other. A large drug-binding pocket
This may not be surprising taking into account the different of about 6000 cubic A located at the intersection of the two TM
species analyzed, the different cocrystallized ligands, the differ- bundles is open to both the inner membrane leaflet and the
ent numbers of TMS, and the different functions of the proteins cytoplasm. A total of 73 amino acids’ aromatic and hydropho-
analyzed. In particular, the communication between the NBD bic residues facing this cavity was accessible to solvent and
and the TMD was found to be variable and, for instance, is involved in the overlapping binding of three different ABC
carried out either through a long and complex intracytoplas- inhibitors. Only two amino acid residues are common to the
mic loop (ICL) in MsbA, through a short L-shaped ICL between three binding sites. Two portals are wide open to the inner
Helical
Walker A1 ABC 1 Walker B1
domain
90–110 aa
Figure 4 The consensus adenosine triphosphate (ATP)-binding region of a typical ABC protein is made of approximately 100 amino acids (aa),
including the Walker A motif, the ABC1 signature, the Walker B motif, the helical domain, and the P-, Q-, C-, D-, and H-loops (see section Glossary).
10 Bioenergetics | ABC Transporters
phospholipid bilayer and allow entry of hydrophobic drugs MDR family of mammalian ABC exporters may have mechan-
which penetrate the membrane by passive diffusion. isms partially different from that of the Pdrp family of plant
and fungal multidrug transporters. Obviously, the resolution
of more complex mechanisms such as those involved in the
gated choride flux of CFTR, the regulation of the potassium
Transport Mechanism
channel of SUR1, or the loading of antigenic peptide by TAP1
will have to wait until more structural and biochemical infor-
Recent structural observations have led to the disposal of the
mation become available.
early hypothetic mechanism of alternating ATP-binding sites
during the drug transport cycle. Instead, a consensus emerges
favoring a rather simple alternating outward–inward access
mechanism by which binding and hydrolysis of ATP by the Substrate Specificity of the Multidrug Exporters and
cytoplasmic NBD controls the binding and translocation of the Reversal Agents
ligand through the TMD (Figure 5). Ligand binding to a high-
affinity pocket formed by the TMDs induces a conformational One of the most intriguing contemporary biochemical pro-
change in the NBDs resulting in a higher affinity for ATP. Two blems is the characterization of the interactions of the TMDs
molecules of ATP each binding to both NBDs induce a close with their transported substrate. The most extraordinary fea-
dimeric conformation which promotes the extrusion of the ture in this context is the apparent lack of specificity of the yeast
ligand. ATP hydrolysis triggers the opening of the NBD dimer. Pdr5p and human Pgp that transports hundreds of different
Finally, phosphate and ADP are released and the ligand-free chemicals, apparently contradicting the famous key/slot con-
NBD dimer conformation is restored. cept described in all textbooks. It is now recognized that at least
This two-state alternating access mechanism is shared not three partly overlapping drug-binding sites operate in MDR,
only by eukaryotic drug exporters but also by bacterial impor- MRP, and Pdrp multidrug transporters and that drug binding
ters. This is shown by analyses of the type 1 bacterial importers depends on the hydrogen-bound acceptor properties, presence
such as the maltose (MalFGK), histidine (HisPQM), and of aromatic rings, and hydrophobicity properties as well as on
methionine (MetNId/l) importers in which low-affinity sub- the surface volume of the substrates.
strate-binding proteins mediate the delivery of substrates to the Since 1980, tremendous efforts have been made to identify
ATP-bound form and also of the type 2 bacterial importers, inhibitors that can reverse MDR in cancer cells or Pdrp in fungi.
such as the vitamin B12 (BtuCD) and metal-chelate (Hi1470/1) Over 30 compounds with cabalistic names and structures have
importers which involve a binding protein of high affinity been shown to inhibit the cancer-related efflux pumps ABCB1
for the substrate even in the absence of ATP. The delivery (MDR), ABCC1 (MRP), or ABCG2 (BCRP), or the fungal Pdrp
of substrates via a binding protein introduces an additional transporters.
conformational switch that is of appreciable structural and Such inhibitors may act directly by acting as pseudosub-
mechanistic divergences between type 1 and type 2 importers. strate, as competitive inhibitor of ATP binding or as a noncom-
The multiple conformation changes occurring during the petitive inhibitor acting at remote sites. They may also act
ATP-driven substrate transport from prokaryotic and eukary- indirectly on aspects of metabolism that affect efflux. The
otic transporters are far from being unraveled; however, at variety of identified drug pump inhibitors indicates that the
present, it is best to regard the importers and the exporters as development of efficient and specific inhibition of the antican-
having partly distinct molecular mechanisms. Moreover, the cer and antifungal pumps should be possible. However, no
Drug
ATP
Figure 5 The flip-flop hypothesis for drug transport. Coupling between TMDs and NBDs is assured trough conserved – a-helices located in ICLs.
The inward conformation of the TM bundles binds drugs in its cavity which is open both to the cytoplasm and to the inner phospholipid leaflet of the
membrane. Upon binding of ATP, the NBDs dimerize and set the outward conformation in which the drug-binding site is exposed to the external
milieu. ATP hydrolysis releases drugs, disrupts NBD dimerization, and resets the inward conformation.
Bioenergetics | ABC Transporters 11
ABC pump inhibitor is yet used clinically. Obviously, many of ABC transporters in bacteria, fungi, plants, and animals have
pump inhibitors, such as the antimalarial quinine derivatives to be sorted out. Specific inhibitors of ABC drug importers and
or the immunodepressor FK506 are known to act on diverse exporters have to be screened for. The physiological mechan-
physiological functions. Moreover, ABC drug pumps seem isms of ABC-linked diseases have to be further studied in
to be involved in important physiological functions not related mouse knockouts. Systems prone to specific inhibition of
to drug efflux such as the development, differentiation, and ABC transporters expression by interfering RNA have to be
maturation of immune cells. This may explain the multiple explored. Genetic therapy of the ABC diseases has to be
secondary effects of the inhibitors. One may expect that until developed.
the molecular structure and mechanisms of drug efflux are fully
understood, the development of anti-MDR or Pdrp compounds
will remain inefficient and merely based on brute screening. The See also: Lipids Carbohydrates Membranes and Membrane
ball is clearly in the hand of scientists studying basic mechan- Proteins: Multidrug Resistance Membrane Proteins.
isms. However, some peculiar clinical treatments have been
considered. For instance, low concentrations of isobuprofen,
which is a potent anti-inflammatory drug, inhibits azole efflux
Further Reading
from Candida albicans, and has been proposed for combination
treatment of fungal infections with fluconazole. Aller SG, Yu J, Ward A, et al. (2009) Structure of P-glycoprotein reveals a molecular
In addition, alternative strategies such as regulating expres- basis for poly-specific drug binding. Science 323: 1718–1722.
sion of drug transporters or uptake of anticancer drugs are also Cannon RD, Holmes AR, Mason AB, et al. (2009) Efflux-mediated antifungal drug
resistance. Clinical Microbiology Reviews 22: 291–321.
being considered. Dean M (2002) The Human ATP-Binding Cassette (ABC) Transporter Superfamily,
Monograph. Bethesda, MD: NCBI, National Library of Medicine (US).
Decottignies A and Goffeau A (1997) Complete inventory of the yeast ABC proteins.
Conclusion Nature Genetics 15: 137–145.
Gottesman MM and Ambudkar SV (2001) Overview: ABC transporters and human
disease. Journal of Bioenergetics and Biomembranes 33: 453–458.
The next frontiers in the study of ABC transporters are chal- Gutmann DA, Ward A, Urbatsch IL, Chang G, and van Veen W (2010) Understanding
lenging. Many aspects of the evolutionary history of this large polyspecificity of multidrug ABC transporters: Closing in on the gaps in ABCB1.
ubiquitous family are still to be unraveled. Better heterologous Trends in Biochemical Sciences 35: 36–42.
overexpression systems have to be developed to allow further Jones PM and George AM (2004) The ABC transporter structure and mechanism:
Perspective on recent research. Cellular and Molecular Life Sciences 61: 682–699.
biochemical and mechanistic studies. Additional atomic struc- Locher K (2009) Structure and mechanism of ATP-binding cassette transporters.
tures have to be produced to identify all conformation changes Philosophical Transactions of the Royal Society B Biological Sciences
during the ATP-driven transport cycle. The diverse mechanisms 364: 239–245.
Algal Hydrogen Production
U M N Murthy and M L Ghirardi, Bioscience Center, National Renewable Energy Laboratory (NREL), Golden, CO, USA
ã 2013 Elsevier Inc. All rights reserved.
Fossil fuels have been utilized as a source of energy for many The unicellular alga Chlamydomonas reinhardtii belongs to the
centuries, resulting in congestion, pollution, and growing group of eukaryotic green algae and lives in freshwater or
environmental stress. Global oil supplies are rapidly being in moist places. In addition to photosynthesis, unicellular
depleted and production levels are increasingly being reported green algae are able to perform many biotechnologically inter-
to be close to their peak. More importantly, zero CO2 emission esting metabolic reactions, such as fermentation and hydrogen
fuels are becoming increasingly important due to the con- photoproduction. The starting point for all biological solar-
straints of global climate change. Therefore, the development driven H2-production methods is the process of photosynthesis
of new systems to produce these fuels is one of the greatest (see Figure 1). Oxygenic photosynthesis involves a sequential
challenges facing our society. Solar energy is the most abun- chain of reactions that include light absorption, charge separa-
dant and accessible renewable energy source available for tion, electron transport, and dark CO2 fixation. Oxygenic
future sustainable production of fuel and electricity. For effec- organisms harness solar energy to extract electrons from H2O,
tive use of solar energy, it is important to develop more cost- which are required for CO2 fixation. Electrons generated from
effective systems with the improved ability to convert solar H2O molecules at photosystem II (PSII) are transferred to the
energy into chemical energy. In this context, hydrogen (H2) is cytochrome b6/f complex (b6f) and subsequently delivered to
considered to be a promising, clean energy carrier for future photosystem I (PSI). Through PSI, the electrons are transferred
technologies. The fact that the burning of H2 produces only to ferredoxin (Fd) (a 2Fe–2S protein). Normally, Fd shuttles
H2O increases its attractiveness, particularly in light of recent electrons to the enzyme ferredoxin–nicotinamide adenine
advances in hydrogen fuel cell technology. The direct photo- dinucleotide phosphate (NADP)-oxidoreductase (FNR) that
production of H2 by cyanobacteria and green algae is an alter- reduces NADPþ to NADPH, the direct source of reductant to
native to utilizing the reductant generated from photosynthetic convert CO2 into carbohydrates in the Calvin–Benson cycle.
water reduction for the fixation of CO2 into carbon-containing Concomitantly, protons (Hþ) are carried from the stromal
molecules. to the lumenal side of the thylakoids, creating a proton gradient
Hydrogen metabolism is primarily the domain of bacteria across the thylakoid membrane, which is utilized by the
and microalgae. Within these groups, it involves many taxo- enzyme adenosine triphosphate (ATP) synthase to generate
nomically diverse species, a variety of enzymes, and several the ATP that is also required for CO2 fixation. Under anaero-
metabolic pathways and processes. Green algae and cyanobac- bic conditions, reduced Fd efficiently binds to an [FeFe]-
teria are photoautotrophic organisms; they can grow under hydrogenase and donates electrons to its catalytic site, known
only sunlight and CO2, without organic sources of carbon. as the ‘H-cluster’ (HC). The function of the hydrogenase is to
It has been known for more than 60 years that, under anaero- combine protons (Hþ) and electrons (e) to form and release
bic conditions, unicellular green algae can metabolize H2, molecular H2. Photosynthetic reducing power can thus be parti-
either by uptaking it and using it as an electron donor in tioned between at least two pathways: CO2 reduction (under
CO2-fixation, or by evolving H2 in the light. Indeed, hydroge- aerobic conditions) and H2 production (under anaerobiosis). It
nase enzymes that either uptake or evolve H2 have been found is important to point out that CO2 reduction requires ATP,
in many green algae. This article briefly examines green algal whereas H2 photoproduction does not. Instead, the latter is
hydrogen metabolism and how it can be adapted for commer- downregulated in the absence of ATP production (see section
cial H2-production processes. H2 Production: Issues and Challenges). As expected, removal
66
Bioenergetics | Algal Hydrogen Production 67
Oxidative
Starch CO2
respiration
NA(P)DH H2
Low light saturation O2-sensitivity
Chl Chl
antenna antenna
NADPH
FeFe
FNR NADP+
H2ase
H+
Competition for reductant
State transitions
e– Fd ATP
ADP + Pi
e– e–
PSII PQ pool PSI ATPase
H+ Nondissipated proton
H2O + gradient
O2 + H
Figure 1 Photosynthetic electron transport pathways in the green alga, Chlamydomonas reinhardtii. Photosynthesis extracts electron from H2O and
via the electron transport chain delivers them to the [FeFe]-hydrogenase where H2 is generated. The red circles denote the major barriers limiting
technological use of algae for photobiological H2 production. Adapted from Ghirardi ML and Mohanty P (2010) Oxygenic hydrogen
photoproduction – current status of the technology. Current Science 98: 499–507, with permission from Current Science.
of CO2 from the headspace enhances light-driven H2-evolution, the sulfur atom from a cysteine residue to a unique binuclear
indicating competition for electrons between the CO2-fixation iron–sulfur subcluster. Three other cysteines coordinate the
and the H2-evolution processes. [4Fe4S]-center to the protein in all known [FeFe]-hydrogenases.
Oxygenic H2 photoproduction results in the simultaneous Except for the bridging cysteine, the iron atoms of the 2Fe2S
generation of H2 and O2 in an 2:1 ratio as long as O2 is con- center are coordinated to carbon monoxide (CO) and cyanide
tinuously removed from the headspace. In the absence of active (CN) ligands, which are responsible for stabilizing the reduced
removal of O2, this mechanism can operate for only 30–90s form of the enzyme, and by a dithiomethylamine group linking
since O2 is a powerful inhibitor of the [FeFe]-hydrogenase reac- the two S atoms. One of the CO groups is found in a position
tion (and it is also a suppressor of [FeFe]-hydrogenase gene bridging both iron atoms when the enzyme is in an oxidized
transcription, which is discussed in detail in later sections). state, but its orientation has been proposed to change toward
An alternate source of electrons for H2 photoevolution is the distal Fe when the enzyme is in the reduced state. Highly
endogenous substrate degradation. This pathway is dependent conserved residues comprising several hydrophobic amino acids
on the reduction of the plastoquinone (PQ) pool by NADH are thought to be involved in the formation of H2 channels, thus
(released from the initial step of glycolysis), in a reaction connecting the catalytic site to the protein surface.
catalyzed by the PQ/NAD(P)H-oxidoreductase. Light absorp- In C. reinhardtii, a monomeric [FeFe]-hydrogenase of
tion by PSI and ensuing electron transport elevates the redox 48 kDa (named HYDA1) with high specific activity was first
potential of these electrons to the redox equivalent of ferre- isolated and biochemically characterized. More recent research
doxin, thus permitting the generation of molecular H2. revealed the presence and expression of a second [FeFe]-
hydrogenase (HYDA2) in C. reinhardtii that is 74% similar
and 68% identical to HYDA1. The transcripts for both hydro-
Enzymes for Algal Photohydrogen Production genases, HYDA1 and HYDA2, are selectively expressed upon
dark anaerobic incubation, suggesting regulation of gene
Hydrogenases are enzymes capable of producing or uptaking expression by O2. HYDA1, and most probably HYDA2, directly
molecular hydrogen. Hydrogenases are classified into three interact with reduced ferredoxin. The nucleus-encoded algal
main groups, according to the cofactor(s) they contain in hydrogenases are synthesized in the cytosol as precursor pro-
their catalytic site, as iron–iron [FeFe], nickel–iron [NiFe], or teins but the mature proteins are localized in the chloroplast
Fe-only hydrogenase. Algal hydrogenases belong to the class stroma. A transit peptide domain that routes the [FeFe]-
of [FeFe]-hydrogenases, they contain only Fe and S in their hydrogenases from the cytoplasm across the chloroplast enve-
catalytic site, and are typically involved in H2 production rather lope and into the chloroplast stroma has been identified at the
than H2 oxidation. They catalyze the reversible reduction of N-terminal region of the enzyme.
protons to H2:
production rates to be usually low. In algal cells, O2 can segments, HYDE and HYDF, that are exclusively found in other
adversely affect enzymatic activity by deactivating previously organisms containing [FeFe]-hydrogenase but encoded as two
assembled [FeFe]-hydrogenases, and the isolated enzyme com- separate genes, HydE and HydF. The HydE proteins are highly
petes with CO for the same binding site in the HC of [FeFe]- homologous to the biotin synthase radical SAM proteins, and
hydrogenases. Oxygen inactivation is thought to occur by the HYDF shares homology with the large family of nucleoside
direct interaction of O2 with the [2Fe–2S] center on catalytic triphosphate (NTP)-binding proteins.
HC. In contrast to O2 inactivation, inhibition by CO is largely The specific role of HydE, HydF, and HydG proteins in
but not entirely reversible. The nature of the final oxygen [FeFe]-hydrogenase maturation is not clearly understood yet.
species bound to the inactivated enzyme is not known. How- Peters et al. proposed that the maturation proteins use com-
ever, it is known that diffusion of O2 gas is necessary for the mon amino acids or other metabolites to synthesize a pre-
inactivation of the enzyme, since the catalytic site of the cursor to the [FeFe]-hydrogenase active site, which is then
enzyme is embedded in the protein structure. transferred to the structural enzyme. HydE and HydG act on
Melis and his coworkers in 2000 demonstrated a novel HydF to assemble an active-site precursor containing all the
strategy to sustain green algal H2 production in the light. nonprotein ligands of the binuclear Fe subcluster, which is
The O2 sensitivity of H2 metabolism was bypassed in a two- subsequently transferred to the hydrogenase. It seems that
stage process, in which O2-evolution and H2-evolution reactions HydE is probably responsible for the synthesis of CO and
were temporarily separated. In the first stage, normal photo- CN ligands and HydG for the dithiomethylamine ligand.
synthesis, CO2-fixation, and release of O2 upon oxidation of The dithiomethylamine-bridged cluster is then transferred as
H2O enabled green algae to survive. In the second stage, the a whole to HydF to generate a complete, functional HC for
authors selectively and partially inactivated the O2-evolving insertion to the [FeFe]-hydrogenase apoprotein.
activity of PSII by incubating algal cultures in a sulfur-depleted
medium. Since respiratory O2 consumption is not affected
by sulfur deprivation, inactivation of O2 evolution facilitated The Interaction of [FeFe]-Hydrogenases with
the transition from the aerobic to an anaerobic state in a sealed Ferredoxin
photobioreactor. The establishment of anaerobiosis in the
photobioreactor induced the expression of the two [FeFe]- In green algae, H2 production couples to the photosynthetic
hydrogenases in algal cells and inhibited the expression of electron transport chain via ferredoxin. Ferredoxins are small
ribulose-1,5-bisphosphate carboxylase oxygenase (Rubisco). soluble [Fe–S] proteins which can be found in every phyloge-
This resulted in redirection of the flow of electrons from the netic group. They are mainly low-potential electron carriers
photosynthetic electron transport chain in the chloroplast involved in various metabolic pathways having diverse redox
away from carbon fixation and towards proton reduction. As partners. Ferredoxin distributes photosynthetic electrons not
a consequence, sulfur-deprived algae were able to produce H2 only to hydrogenase but also to other electron-dependent
for a total of 3–4 days. enzymes, the most important of which is ferredoxin-NAD(P)-
reductase (FNR) for CO2 fixation.
There are six ferredoxin genes in C. reinhardtii. The physio-
[FeFe]-Hydrogenase Maturation logical regulation and metabolic function of each of the six
ferredoxins has not yet been established, although it is assumed
Biosynthesis of an active [FeFe]-hydrogenase is a complex that both hydrogenases may associate with the photosynthetic
process. [FeFe]-hydrogenase maturation proteins were initially electron transfer ferredoxin (PetF, also called FDX1) which
discovered in the green alga C. reinhardtii. Posewitz et al. showed is involved in photosynthesis and it is a typical plant-type
that two novel radical S-adenosyl-methionine (radical SAM) [2Fe–2S] ferredoxin. Recently, Winkler et al. characterized the
proteins, HYDEF and HYDG, are required for C. reinhardtii kinetics of electron transfer processes between HydA1 and
[FeFe]-hydrogenase activity. Using a chemochromic sensor, PetF. Using an in vitro system by reconstituting part of the
a hydef mutant that was unable to produce hydrogen was photosynthetic electron transport chain consisting of plastocy-
isolated from a C. reinhardtii mutagenesis library. Moreover, anin, PSI, PetF, and [FeFe]-hydrogenase, they demonstrated
the HYDEF gene was found to be adjacent to the HYDG that residue K396 of HydA1 is crucial for a successful binding
gene, and both were shown to be present in all other [FeFe]- and electron transfer between PetF and HydA1. However, other
hydrogenase-containing organisms, although their role was studies by Terauchi et al. found that each of the six FDX genes is
unknown at that time. In the absence of a functional HYDEF, differentially regulated in response to changes in nutrient sup-
both hydrogenase structural genes were induced but no ply and/or anoxia. In this regard, more detailed understanding
hydrogenase activity was detected in the mutant. Complemen- of the hydrogenase–ferredoxin association mechanism and
tation of the mutant with genomic DNA containing a func- kinetics is necessary for engineering hydrogenase to divert a
tional copy of the HYDEF gene restored hydrogenase activity in greater electron flux to the H2 production pathway and thus to
the algae. Later on, King et al. showed that the heterologous optimize photobiological H2 production.
expression of active algal [FeFe]-hydrogenase in the bacterium,
Escherichia coli, could be accomplished by co-transforming the
HYDA1 structural gene along with both the HYDEF and HYDG H2 Production: Issues and Challenges
genes, and that all these genes were required and sufficient for
the expression of a functional [FeFe]-hydrogenase in this bac- Photobiological H2 production by C. reinhardtii has become an
terium. The algal HYDEF gene encodes for two unique protein important research field because of its potential to be applied
Bioenergetics | Algal Hydrogen Production 69
O2 Sensitivity
The simultaneous photoproduction of H2 and O2 from H2O
in green alga depends on O2 tolerance of the reversible
hydrogenase enzyme. When oxygenic photosynthesis is active,
and unless strict measures are taken to remove O2, green algal
H2-production activity is transient owing to the rapid inactiva-
tion of the reversible hydrogenase by photosynthetic O2. Sus-
tained hydrogen production will only be possible when the
hydrogenase enzyme remains active under O2-evolving condi-
tions. Different strategies for development of O2 tolerant
hydrogenases have included molecular engineering of the Figure 2 Photograph of the photobioreactor used for H2 production
hydrogenases by either random or site-directed mutagenesis from Chlamydomonas reinhardtii culture showing probes used for
to remove O2 sensitivity. The latter has mostly focused on monitoring and the controlling the system. Hydrogen bubbles
physical restriction of O2 access catalytic site by reducing the emanate toward the surface of the culture and are collected in a
O2 diffusion rate or shielding the active catalytic site. Although liquid-accumulating bottle (not shown).
the results are encouraging from a scientific perspective in
understanding enzyme structure and function, none of these
approaches has yielded biotechnologically significant hydrogen- immobilization of sulfur/phosphorous-deprived algae in thin
producing strains yet. Ca2þ-alginate film matrices has extended H2 photoproduction
An alternative approach to sustain H2 production in the for more than 150 h and also increased the stability of H2
light is to use sulfur deprivation to partially inactive O2 evolu- photoproduction activity in the presence of atmospheric O2.
tion, as discussed above. The novel application of this process This work shows potential for further significant improve-
has led to significant and sustainable light-dependent release ments in both the rate and efficiency of H2 production under
of H2 by algal cultures, although at low-conversion efficiencies sulfur-deprived conditions.
due to limited PSII activity. Several approaches have been
examined to increase the yield of hydrogen in C. reinhardtii
Reduced Antenna Size
under sulfur-deprived condition, including optimization of the
light and pH conditions in the photobioreactors optimization Photosynthesis and H2 production in unicellular green algae
of the medium composition and synchronization of cell divi- can in principle operate with a nearly 100% photon utiliza-
sion (see Figure 2). Kruse et al. reported a significant increase tion efficiency, making them potentially efficient biocatalysts
in the rate and duration of H2 photoproduction in sulfur- for the generation of H2 from sunlight and water. However,
deprived mutants that are starch over-accumulators and green algal cultures show poor light utilization efficiency under
blocked in state transitions. Another advance related to the direct sun light and can waste up to 80% of the absorbed
sulfur-deprived process came with the recent discovery of a irradiance. The reason for this is that green algal photosynthe-
mutant affected in sulfate permease activity, which is required sis normally saturates at about one-fifth of full sunlight inten-
for transport of sulfate into the chloroplast. This mutant is a sity or less. This optical property of the cells would further
potential candidate for H2 photoproduction without the need lower the productivity of a commercial hydrogen production.
to totally remove sulfate from the growth medium. Enhanced hydrogen production may be achieved by engineer-
The reported rates of H2 production by sulfur-deprived ing the antenna size to suppress fluorescence and heat dissipa-
cultures is still far below the maximum potential rate of H2 tion that causes a reduction on antenna efficiency.
photoproduction for an algal system, mainly due to partial
inactivation of PSII. Furthermore, the system is difficult to
Competition for Reductants
scale up and maintain. These challenges, which are related
partly to the photobioreactor design, might be addressed by Competition from the CO2-fixation pathway for electrons
immobilizing the green algae. The immobilization technique from H2O is a major concern for sustained H2 production,
effectively separates cells from the liquid phase, significantly as discussed earlier in the article. This concern is based on the
increases the cell density and, as a consequence, allows for higher affinity of ferredoxin for FNR than hydrogenase, which
more efficient light utilization on a per area basis. Laurinavi- could result in substantial drainage of electrons away from H2
chene, et al. in 2006 demonstrated that sulfur-deprived, immo- production. Therefore, improved H2 production depends on
bilized cells of a nonmotile mutant of C. reinhardtii on glass interaction of [FeFe]-hydrogenases with the electron-carrying
fibers significantly increase the duration of H2 production. protein ferredoxin. Agapakis et al. fused the hydrogenase
More recently, Kosourov and Seibert, demonstrated that from C. acetobutylicum to ferredoxin from spinach or from
70 Bioenergetics | Algal Hydrogen Production
C. acetobutylicum using flexible protein linkers of various the molecular regulation of the genes encoding hydrogenases
lengths and showed a threefold increase in H2 production by and accessory proteins needed for assembly of hydrogenases,
a nonphotosynthetic, recombinant E. coli system. Moreover, as well as in identifying and addressing the major barriers to a
chimeras between ferredoxin and various ferredoxin reductases future commercial process. With increasing interest from the
have been shown to be functional in vitro, with improved scientific community and the public in clean and renewable
electron transfer rates, presumably due to the increased local energy sources, rapid progress could bring this technology
concentration of reduced ferredoxin. This approach may pro- to fruition in the not-so-long future. Moreover, the possibilities
vide new targets for metabolic engineering of H2 production in and challenges within synthetic biology should be further
the future. explored for creating green algae with a high potential for H2
production.
87
88 Bioenergetics | Amine Oxidases
reduction upon polyamine oxidation followed by (2) flavin PAOs preferentially oxidize acetyl spermine and acetyl spermi-
reoxidation by molecular oxygen. PAOs catalyze the oxidation dine: spermidine and putrescine are the respective reaction pro-
of polyamines’ secondary amino groups yielding different pro- ducts, together with 3-aminopropanal and hydrogen peroxide.
ducts depending on the organism considered. Mammalian Oxidation of spermine by plant PAOs gives 1,3-diaminopro-
pane, hydrogen peroxide, and 1-(3-aminopropyl)-4-aminobu-
tanal. The latter spontaneously cyclizes to 1-(3-aminopropyl)
MAO O pyrrolinium that undergoes further spontaneous rearrange-
ments to 1,5-diazobicyclo[4.3.0.]nonane (Scheme 1). The oxi-
NH CH C
S R dation of spermidine by plant PAOs gives 1,3-diaminopropane,
CH2 hydrogen peroxide, and 4-aminobutanal that yields 1-pyrroline
H2C N N O
O by spontaneous cyclization. At variance with MAOs and copper/
topaquinone (TPQ) AOs, the oxidation of polyamines by PAOs
N
H3C N H does not release ammonia.
O PAOs play an important role in the regulation of intracellu-
O
(b) O lar polyamines level, and seem to be important for homeosta-
(a)
sis and cell survival.
O
NH CH C Copper Amine Oxidases
H CH2 Copper amine oxidases (amine: oxygen oxidoreductase (dea-
CH2 N minating; copper containing); EC 1.4.3.6) (CAOs) are homo-
CH2 dimers in which each subunit (Mw 70–90 kDa) contains a
tightly bound type II copper ion and a TPQ. TPQ is derived
CH2 O
from a posttranslational modification of a tyrosyl residue,
CH2 O found in a strictly conserved amino acid consensus sequence
NH CH asn-tyr-asp/glu (NYD/E). The pink color of CAOs stems from
an intense absorption band around 500 nm due to the oxi-
C O
dized TPQ. CAOs catalyze the oxidative deamination of pri-
(c)
mary amino groups of mono-, di-, and polyamines, abstracting
Figure 1 Structure of the (a) FAD covalently bound in MAOs; (b) the two electrons from amines and transferring them to molecular
oxidized form of TPQ; and (c) lysyl tyrosylquinone. oxygen, to form the corresponding aldehyde, ammonia, and
(P)
(1)
+ O2, H2O
H2N (CH2)3 NH (CH2)4 NH2 H2N (CH2)3 NH2 + HOC(CH2)3 NH2
− H2O2
+H2O −H2O
N
(P)
(a)
(2)
+ O2, H2O
H2N (CH2)3 NH (CH2)4 NH (CH2)3 NH2 H2N (CH2)3 NH2 + HOC (CH2)3 NH (CH2)3 NH2
−H2O2
+H2O −H2O
H +H+
N N NH2 (CH2)3 N
−H+
(c) (b)
(M)
(3)
+ O2, H2O
H2N (CH2)3 NH (CH2)4 NH2 H2N (CH2)2 CHO + H2N (CH2)4 NH2
−H2O2
(M)
(4)
+ O2, H2O
H2N (CH2)3 NH (CH2)4 NH (CH2)3 NH2 H2N (CH2)2 CHO + NH2 (CH2)4 NH (CH2)3 NH2
−H2O2
Scheme 1 Spermidine and spermine oxidation catalyzed by plant (P) and mammalian (M) PAOs. Spermidine (1, 3); Spermine (2, 4); (a) 1-pyrroline;
(b) 1-(3-aminopropyl)-pyrrolinium; and (c) 1,5-diazobicyclo[4.3.0.]nonane. Arrows indicate the cleavage of polyamines.
Bioenergetics | Amine Oxidases 89
hydrogen peroxide. Again, the catalytic mechanism can be The enzyme from bovine plasma has been crystallized.
divided into two half-reactions: (1) enzyme reduction at the Tissue-bound AOs are often indicated somewhat mislead-
quinone moiety (TPQ ! TPQH2) by substrate followed by (2) ingly as semicarbazide-sensitive amine oxidases (SSAOs),
reoxidation by molecular oxygen since all CAOs, at variance with FAD-dependent enzymes,
are inhibited by semicarbazide and other carbonyl reagents.
Eox þ R CH2 NHþ þ
3 ! Ered NH3 þ R CHO [1] Intracellular SSAOs are widely distributed: smooth muscle
cells of vascular tissue of all mammalian species are good
Ered NHþ þ
3 þ O2 þ H2 O ! Eox þ NH4 þ H2 O2 [2]
sources of these enzymes, which have been also detected in
uterus, ureter and vas deferens, in ox dental pulp, in human
The group of CAOs includes the following:
umbilical artery, in rat adipocytes, and chondrocytes.
1. Diamine oxidases (DAOs), ubiquitous enzymes occurring Plasma AOs may be considered key enzymes in cell
in prokaryotes as well as eukaryotes (bacteria, fungi, plants, growth and differentiation processes and, thus, in tumor
and animals). Several DAOs have been crystallized from development and growth regulation. Moreover, the
bacteria, from the yeast Hansenula polymorpha, and from increased BzAO activity in blood serum of pregnant
pea seedlings. Plant DAOs from various species have been women supports the possibility that this enzyme has a
purified to homogeneity and characterized, the best known protective role against the polyamines released from the
and studied being those from lentil (Lens esculenta) and pea fetoplacental unit. SSAOs seem to play an important role
(Pisum sativum) and from latex of the shrub Euphorbia char- in vascular wall. Moreover, these enzymes might be
acias. In mammals, the best-known enzymes are those from involved in the regulation of glucose metabolism (perhaps
pig kidney and intestine and human placenta. DAOs are via the H2O2 produced) and in the regulation of leukocyte
mainly active on short aliphatic diamines, such as putrescine trafficking in endothelial cells. SSAOs have also been shown
(1,4 diaminobutane) and cadaverine (1,5 diaminopentane). to be a new class of DNA-binding proteins: in the presence of
The physiological role of DAOs is multifaceted, because polyamines, they bind DNA and oxidize DNA-bound poly-
this class includes several enzymes with different localiza- amines. A structural similarity between SSAOs and VAP-1, a
tions and substrates. Bacteria and yeasts can utilize amines protein involved in cellular adhesion, has been observed and
as nitrogen and carbon sources through the reaction with a human SSAO/VAP-1 protein has been crystallized.
AO. Plant DAOs are implicated in wound healing, in detox- 3. The mammalian extracellular matrix-bound lysyl oxidase
ification, and in cell growth by regulating the intracellular [EC 1.4.3.13] (LOX), a 30-kDa protein, differs from other
di- and polyamine levels, and the aldehyde products might members of the group because a lysyl tyrosyl quinone
have a key role in the biosynthesis of some alkaloids. The (LTQ) rather than TPQ is the redox cofactor (Figure 1(c)).
function of DAOs in mammals is even more diverse and LTQ is formed by oxidation of a conserved tyrosine residue
elusive and a plethora of physiological functions, some- and subsequent intramolecular cross-linking with the
times opposite, have been described. AO activity is found e-amino group of a conserved lysine. LOX catalyzes the
in many tissues, the highest levels being in decidual cells of oxidative deamination of lysyl residues in elastin and col-
placenta, in kidney tubular epithelial cells, and in intestinal lagen allowing the formation of cross-links essential for the
epithelial cells. These localizations may suggest a barrier structure of these proteins. The genetic or acquired decrease
function for DAOs to prevent the entry of diamines and of LOX activity is accompanied by severe pathological con-
polyamines in the body. Furthermore, these enzymes may ditions such as tendon laxity and formation of aneurisms
keep at bay the endogenous histamine, which otherwise in arteries.
can cause several pathological conditions such as allergy, A LOX from Pichia pastoris has been crystallized and
peptic ulcer, and anaphylactic reactions. Several observa- characterized. This enzyme, cloned and overexpressed,
tions point to a relationship between AO activity and shows TPQ as the redox cofactor. Pichia pastoris LOX dis-
growth, both in normal and tumor tissues, that is, in cell plays catalytic activity toward tropoelastin (the un-cross-
proliferation and differentiation. DAOs have also been pro- linked form of elastin), and lysine and lysine-containing
posed as immune response modulators. It has been demon- peptides are the preferred substrates for this enzyme. In this
strated that human placental DAO is identical to the respect, it resembles the LTQ-containing mammalian AOs.
amiloride-binding protein and thus in some way involved
in the regulation of epithelial ion transport. In analogy with
MAOs, also DAOs have been proposed to be involved in
demethylation of histones, in particular of methylated argi- Concluding Remarks
nines. In this case, their importance might be not only the
modification of histones but also the production of hydro- In the past few years, evidence has accumulated about the
gen peroxide just at nuclear level. physiological relevance of hydrogen peroxide, which is gener-
2. The mammalian extracellular soluble and intracellular ated in the catabolism of mono-, di-, and polyamines by all
tissue-bound AOs are able to metabolize mono-, di-, and AOs. Hydrogen peroxide, which is always formed in the reac-
polyamines, even though in vitro they are preferentially active tions catalyzed by AOs, is more and more considered either a
toward nonphysiological amines such as benzylamine. Extra- crucial reagent for important biochemical processes or a signal
cellular AOs are generally called either plasma and serum and a defense molecule, rather than a noxious waste product.
AOs or benzylamine oxidases (BzAOs). The better-known This reactive oxygen species is toxic at high concentration.
BzAOs are those from bovine, swine, and equine plasma. However, at lower concentrations it regulates the cell number
90 Bioenergetics | Amine Oxidases
during embryonic development as well as the proliferation and Ciccone DN, Su H, Hevi S, et al. (2009) KDM1B is a histone H3K4
adhesive properties of endothelial and smooth muscle cells. demethylase required to establish maternal genomic imprints. Nature 461:
415–419.
Hydrogen peroxide appears to be involved in the impairment
Dandrifosse G (ed.) (2009) Biological Aspects of Biogenic Amines, Polyamines and
of cell growth and proliferation, in the regulation of many Conjugates. Trivandrum, India: Transworld Research Network.
genes and transcription factors, and in the transduction of De Colibus L, Li M, Binda C, et al. (2005) Three-dimensional structure of human
cellular signals in many living species. In plants, hydrogen monoamine oxidase A (MAO A): Relation to the structures of rat MAO A and human
peroxide might be utilized by peroxidases in basic physiologi- MAO B. Proceedings of the National Academy of Sciences of the United States
of America 102: 12684–12689.
cal events, such as development, polymerization of lignin and Duff AP, Cohen AE, Ellis PJ, et al. (2003) The crystal structure of Pichia pastoris lysyl
suberin precursors, and catabolism of indoleacetic acid, in oxidase. Biochemistry 42: 15148–15157.
response to wounding or to pathogen invasion. Floris G and Mondovı̀ B (eds.) (2009) Copper Amine Oxidases. Boca Raton, London
NY: CRC Press, Taylor & Francis Group.
Jalkanen S and Salmi M (2001) Cell surface monoamine oxidases: Enzymes in
search of a function. New EMBO member’s review. The EMBO Journal 20:
See also: Bioenergetics: Quinones. 3893–3901.
Janes SM, Mu D, Wemmer D, et al. (1990) A new redox cofactor in eukaryotic enzymes:
6-hydroxydopa at the active site of bovine serum amine oxidase. Science
248: 981–987.
Further Reading Mure M, Mills SA, and Klinman JP (2002) Current topics. Catalytic mechanism
of the Topa quinone containing copper amine oxidases. Biochemistry
Binda C, Coda A, Angelini R, et al. (1998) Crystallization and preliminary X-ray analysis 41: 9269–9278.
of polyamine oxidase from Zea mays L. Acta Crystallographica Section D Shi Y, Lan F, Matson C, et al. (2004) Histone demethylation mediated by the nuclear
54: 1429–1431. amine oxidase homolog LSD1. Cell 119: 941–953.
Anaplerosis
R R Russell III, Yale University School of Medicine, New Haven, CT, USA
H Taegtmeyer, The University of Texas Medical School at Houston, Houston, TX, USA
ã 2013 Elsevier Inc. All rights reserved.
The word anaplerosis (from the Greek, meaning to fill up) was metabolic homeostasis through the regulation of insulin secre-
coined in the 1960s by Sir Hans Kornberg to describe pathways tion from the b-islet cells of the pancreas. We now focus on the
that replenish intermediates in metabolic cycles. A metabolic mitochondrial anaplerotic pathways.
cycle transforms a substrate with little or no change in the
concentration of the cycle’s constituents, the central process
in energy substrate metabolism. A classic example for a meta- Anaplerotic Pathways
bolic cycle is the citric acid cycle. Here anaplerotic pathways
Substrates for Anaplerosis
mediate the entry of metabolites into the cycle as compounds
other than acetyl-CoA and thereby replenish the pool size of The known anaplerotic pathways for the citric acid cycle are
the citric acid cycle. Other anaplerotic pathways are present in depicted in the schematic drawing of Figure 2. As a key com-
eukaryotic and prokaryotic organisms; however, this article ponent of all living cells, the citric acid cycle is highly organized
focuses on anaplerosis as it relates to the citric acid cycle in and responds instantly to changes in its environment. The
mammalian tissues and the importance of anaplerosis in the citric acid cycle is tied into a distributive system of energy
maintenance of organ function. transformation reactions (Figure 1) and flux through the ana-
Cycles have evolved because in a competitive environment plerotic pathways. The primary substrates for anaplerosis are
the chances for survival are greatest if resources are used in an lactate and alanine as precursors of pyruvate, although gluta-
optimal way. For example, energy transfer in heart muscle is mate can be a physiologically significant anaplerotic substrate
linked to a series of cycles, beginning with the circulation and as well. In addition, the branched chain amino acids valine and
ending with actin–myosin cross-bridge formation (Figure 1). isoleucine, as well as odd-chain fatty acids and their metabolic
Steady-state concentrations of metabolic intermediates in a end product, propionate, serve as anaplerotic substrates.
cycle depend on their rates of synthesis and degradation. In
other words, substrates entering the citric acid cycle as citrate
Entry at Malate and Oxaloacetate
(via the condensation of acetyl-CoA with oxaloacetate) do not
cause a net change in the citric acid cycle pool size because the two In the heart the major anaplerotic substrate in the heart is
carbons of acetyl-CoA are ultimately lost as CO2 in the isocitrate pyruvate. Although the majority of pyruvate entering the mito-
and the a-ketoglutarate dehydrogenase reactions, respectively. In chondria is oxidatively decarboxylated (and most likely by CO2
contrast, anaplerosis supplies compounds to the citric acid cycle arising from pyruvate decarboxylation) and enters the citric acid
through reactions other than those catalyzed by citrate synthase. cycle as acetyl-CoA, a portion is also carboxylated and enters the
These compounds replenish carbon intermediates lost primarily four-carbon (C-4) pool of the citric acid cycle. This conversion is
as amino acids (glutamate or aspartate) or as oxaloacetate. catalyzed by either pyruvate carboxylase (PC, E.C. 6.4.1.1),
The role of anaplerosis in the citric acid cycle is threefold. forming oxaloacetate or by nicotinamide adenine dinucleotide
First, as intermediates are drained away during biosynthetic phosphate (NADP)-dependent malic enzyme (E.C. 1.1.1.40),
processes such as gluconeogenesis, glyceroneogenesis, and forming malate. While the NADP-dependent malic enzyme
amino acid synthesis, anaplerotic pathways replace them, reaction is reversible, the reaction in the direction of malate
assuring sufficient carbon flux for citrate synthesis and, production is slow and unlikely to play a significant role in
hence, allow citric acid cycle flux to proceed unimpaired. anaplerosis. Another provider of C-4 intermediates in the citric
These aspects of anaplerosis are especially important in the acid cycle is aspartate, which undergoes transamination with
liver and renal cortex. Second, anaplerosis facilitates energy a-ketoglutarate via aspartic aminotransferase to form oxaloace-
transfer in organs with high rates of energy turnover, such as tate and glutamate. In contrast to the carboxylation of pyruvate,
the heart and skeletal muscle, especially under situations such the entry of aspartate as oxaloacetate is balanced by the loss of
as ischemia in which normal functioning of the citric acid cycle a-ketoglutarate from the citric acid cycle, resulting in the homeo-
is impaired. Third, anaplerosis also regulates whole-body stasis of citric acid cycle intermediates.
105
106 Bioenergetics | Anaplerosis
Entry via a-Ketoglutarate is present in a variety of tissues, including the liver, kidney,
brain, heart, and skeletal muscle.
Mitochondrial a-ketoglutarate can be readily formed from
glutamate via transamination with pyuruvate (forming ala-
nine) or oxaloacetate (forming aspartate). The transamina- Entry via Succinyl-CoA
tion of glutatmate with oxaloacetate by glutamate
The citric acid cycle intermediate succinyl-CoA plays an impor-
oxaloacetate transaminase (E.C. 6.2.1.1) results in a gain of
tant role in fatty acid and amino acid metabolism because it is
a C-5 intermidate at the same time that a C-4 intermediate is
the entry point of odd-chain fatty acids, propionate, and the
lost from the citric acid cycle. Of importance is that the
branched chain amino acids valine and isoleucine into the
mitochondrial pools of a-ketoglutarate and glutamate are in
citric acid cycle. Substrate entry as a-ketoglutarate or succinyl-
equilibrium and therefore labeling patterns of glutamate are
CoA, in contrast to other anaplerotic pathways, is associated
identical to those for a-ketoglutarate. As discussed below, this
with the generation of energy-rich phosphates via a substrate-
relationship between a-ketoglutarate and glutamate can be
level phosphorylation. The reaction catalyzed by succinyl-CoA
exploited in measuring citric acid cycle flux, relative rates of
synthetase (E.C. 6.2.1.4) normally favors the conversion of
contribution of substrates to the citric acid cycle, and rates
succinyl-CoA to succinate and leads to substrate level phos-
of anaplerosis. Furthermore, glutamate can be converted to
phorylation of GDP to GTP. This energy-providing pathway
a-ketoglutarate and NHþ 4 by glutamate dehydrogenase, which becomes important under anaerobic conditions when ATP
generation by oxidative phosphorylation is inhibited, such as
in the setting of ischemia.
Ca2+
Circulation
Krebs NADH H+ Entry via Fumarate
cycle
H+ PCr
In addition to the amino acids phenylalanine and tyrosine
entering as fumarate, the purine nucleotide cycle enriches the
Ca2+
ATP citric acid cycle based on the net reaction
Ca2+
Aspartate þ GTP ! fumarate þ NH3 þGDP þ Pi
Cross Several workers have demonstrated that flux through the purine
bridges nucleotide cycle increases in skeletal muscle during intense exer-
cise. This increased flux has two effects: first, it can maintain the
Ca2+
pool of adenine nucleotides, and second, it can increase the citric
Figure 1 Cycles of energy transfer in heart muscle. The central role acid cycle pool size via anaplerosis. Both of these effects are
of the Krebs cycle is highlighted. See text for details. expected to improve energy metabolism in exercising muscle.
Citrate
Oxaloacetate
Aspartate Isocitrate
asparagine Glutamine
Malate
Phenylalanine
tyrosine a-KETOGLUTARATE Glutamate
Valine
isoleucine
Fumarate methionine
Histidine
AMP
Proline
Succinyl-CoA Arginine
Succinate
Exit of Cycle Intermediates: Balancing Anaplerosis The method is illustrated in Figure 3 in which the enrichment
of the carbon skeleton of a-ketoglutarate (and therefore gluta-
Under steady-state conditions, substrates entering the citric mate, which is present in sufficient concentrations to be mea-
acid cycle via anaplerotic pathways are balanced by removing surable by NMR spectroscopy) at the C-3 and C-4 positions is
an equivalent amount of citric acid cycle intermediates through used to quantify anaplerosis. Label in these positions is gener-
pathways that maintain a constant citric acid cycle pool size. ated from randomization of the C-4 carbon in the first turn of
These pathways have been termed cataplerotic, although the the citric cycle. Therefore, the sum of the 13C enrichments of
term is somewhat an oxymoron; instead, we prefer the more the C-2 and C-3 carbons will be equal to the enrichment of the
appropriate term drainage. Drainage pathways generally involve C-4 carbon of glutamate. In contrast, with anaplerotic activity,
removing the citric acid cycle of cycle intermediates oxaloacetate the labeled C-2 and C-3 carbons will be diluted by 12C carbons
(as aspartate via transamination, or phosphoenolpyruvate via arising from unlabeled anaplerotic substrates, and the sum of
decarboxylation by phosphoenolpyruvate carboxykinase (E.C. the enrichments of the labeled C-2 and C-3 carbons will be less
4.1.1.32)), citrate via export from the mitochondrial matrix, than the enrichments of the C-4 carbon of glutamate. For
or a-ketoglutarate via transamination to glutamate. While example, using [2-13C]acetyl-CoA as a substrate and conditions
these drainage pathways are usually thought of as means to where there is no anaplerotic flux, analysis of the enrichment
balance anaplerotic pathways, they play critical roles in renal of C-2, C-3, and C-4 positions of glutamate reveals that a/c ¼ 0,
gluconeogenesis and enterocyte energy production from gluta- indicating no anaplerotic flux. Further refinements to the
mine (see below). NMR-based methods take into account the recycling of car-
bons in pyruvate (a major source of anaplerotic substrate)
derived from the citric acid cycle to improve the accuracy of
Measuring Rates of Anaplerosis measurements of anaplerotic flux.
Acetyl-CoA
Citrate
Oxaloacetate
1 2 3 4 5 a-Ketoqlutarate
a-Ketoglutarate a-Ketoglutarate
and glutamate and glutamate
C2 (or C3)/C4 C2 (or C3)/C4
enrichment: 0.5 enrichment: 0.3
Figure 3 Fundamental concept of assessing anaplerotic flux using 13C-NMR spectroscopy. The black circles represent 13C that enters the citric
acid cycle pool via the first turn of the citric acid cycle. The black squares represent 13C that enters the citric acid cycle pool via the second turn of
the citric acid cycle. From Malloy C, Sherry A, and Jeffrey F (1988) Evaluation of carbon flux and substrate selection through alternate pathways
involving the citric acid cycle of the heart by 13C-NMR spectroscopy. Journal of Biological Chemistry 263: 6964–6971.
Anaplerosis in Skeletal Muscle during Exercise because the primary source of enrichment during acute exercise
appears to be flux through the reaction catalyzed by alanine
The transition from rest to moderate or intense exercise is
aminotransferase (E.C. 2.6.1.2). This reaction results in entry
associated with large increases in skeletal muscle adenosine
of glutamate as a-ketoglutarate; however, pyruvate carboxylase
triphosphate (ATP) turnover, which must be supported by up
and malic enzyme may contribute minor amounts to citric acid
to 100-fold increases in citric acid cycle flux. Although citric
cycle enrichment in exercising muscle.
acid cycle intermediates increase only three- to fourfold, these
relatively small increases in the citric acid cycle pool size (via
Glutamine Metabolism by the Small Intestine
anaplerosis) can reflect dramatic increases in citric acid cycle
flux. It has been suggested that the increases allow skeletal Glutamine is a source of energy for a number of specialized
muscle to adapt to the energetic demands of exercise, but tissues, including the small intestine. When glutamine is taken
interestingly, there is no appreciable change in citric acid up in the cell, it enters the citric acid cycle as a-ketoglutarate
cycle pool size at lower levels of exercise. The majority of and leaves the cycle through oxidation as CO2. More specifi-
changes in individual intermediates occur in the second span cally, a-ketoglutarate is converted to malate by citric acid cycle
of the citric acid cycle (i.e., from succinate to oxaloacetate) reactions and malate may be transported out of the
Bioenergetics | Anaplerosis 109
ACC Citrate
PCC Succinyl-CoA
(a)
GDP
Soleus
Soleus
Heart
Heart
GTP
EDL
EDL
Diabetic ketoacidosis
PC Pyruvate Oxaloacetate
Citrate
(b)
Figure 4 Expression of the biotin-containing carboxylases, acetyl-CoA Succinate a-Ketoglutarate
(ACC), pyruvate carboxylase (PC), and propionyl-CoA carboxylase (PCC),
in heart muscle based on streptavidin blotting (a) and pyruvate
Succinyl-CoA
carboxylase expression in rat heart and skeletal muscle (b). Reprinted
from Gibala MJ, Young ME, and Taegtmeyer H (2000) Anaplerosis of the
citric acid cycle: Role in energy metabolism of heart and skeletal muscle.
Acta Physiologica Scandinavica 168: 657–665. GDP
GTP
Citric acid cycle pool size increases in hearts of rats with cycle. Changes in the cell’s environment lead to depletion
experimentally induced diabetes, suggesting enrichment by and replenishment (anaplerosis) of citric acid cycle intermedi-
anaplerotic pathways. We have suggested that an increase in ates. The multiple pathways of anaplerosis utilize a variety of
anaplerotic flux, which primarily occurs through pyruvate car- substrates, including carbohydrates, odd-chain fatty acids, and
boxylation (via malic enzyme), plays an important role in amino acids. These pathways reflect a system of redundancy
maintaining flux through the second span of the citric acid that is important for both function and survival of the cell.
cycle. Acutely, the metabolic derangement of ketoacidosis
that occurs with diabetes inhibits flux through a-ketoglutarate
dehydrogenase by sequestration of coenzyme A (CoASH). This See also: Bioenergetics: Mitochondrial Metabolite Carrier Protein
phenomenon is associated with contractile dysfunction of the Family; Metabolism Vitamins and Hormones: Amino Acid
heart that can be readily reversed by the addition of glucose, Metabolism; Branched-Chain Amino Acids.
lactate, or pyruvate (all of which are anaplerotic substrates).
The effects of pyruvate are mediated by enrichment of malate
in the citric acid cycle pool, which occurs by carboxylation of Further Reading
pyruvate to form malate and oxaloacetate through the actions of
malic enzyme and pyruvate carboxylase, respectively (Figure 5). Baldwin JE and Krebs HA (1981) The evolution of metabolic cycles. Nature
The citric acid cycle is thereby able to operate once again in a 291: 381–382.
Cohen DM and Bergman RN (1997) Improved estimation of anaplerosis in heart using
span that can generate reducing equivalents to support oxidative 13
C NMR. American Journal of Physiology 273: E1228–E1242.
phosphorylation of adenosine diphosphate to form the ATP Gibala MJ, Young ME, and Taegtmeyer H (2000) Anaplerosis of the citric acid cycle:
necessary to drive the contractile machinery of the heart. Role in energy metabolism of heart and skeletal muscle. Acta Physiologica
Scandinavica 168: 657–665.
Gunawardana SC, Liu YJ, Macdonald MJ, Straub SG, and Sharp GW (2004) Anaplerotic
Long-Chain Fatty Acid Oxidation Defects and Myopathies input is sufficient to induce time-dependent potentiation of insulin release in rat
pancreatic islets. American Journal of Physiology – Endocrinology and Metabolism
The inability to oxidize long-chain fatty acids due to deficien- 287: E828–E833.
cies in activity of carnitine palmitoyltransferase-1 (E.C. Kornberg H (1966) Anaplerotic sequences and their role in metabolism. Essays in
2.3.1.21) or the enzymes involved in b-oxidation is associated Biochemistry 2: 1–31.
Krebs HA and Johnson WA (1937) The role of citric acid in intermediate metabolism in
with contractile dysfunction due to skeletal and heart muscle animal tissues. Enzymologia 4: 148–156.
damage. One proposed mechanism responsible for the Malloy C, Sherry A, and Jeffrey F (1988) Evaluation of carbon flux and substrate
decrease in contractile activity is decreased citric acid cycle selection through alternate pathways involving the citric acid cycle of the heart by
13
flux due to loss of intermediates from damaged myocytes. C NMR spectroscopy. Journal of Biological Chemistry 263: 6964–6971.
Martini WZ, Stanley WC, Huang H, et al. (2003) Quantitative assessment of anaplerosis
Based on this hypothesis, one clinical study has treated patients
from propionate in pig heart in vivo. American Journal of Physiology
with defects in long-chain fatty acid oxidation with odd-chain 284: E351–E356.
triglycerides (which can increase the citric acid cycle pool size Mochel F, DeLonlay P, Touati G, et al. (2005) Pyruvate carboxylase deficiency: Clinical
by entering as succinyl-CoA) and tested the hypothesis that an and biochemical response to anaplerotic diet therapy. Molecular Genetics and
increase in citric acid cycle may improve muscle function. As Metabolism 84: 305–312.
Owen OE, Kalhan SC, and Hanson RW (2002) The key role of anaplerosis and
proof of principle, the study has demonstrated beneficial cataplerosis for citric acid cycle function. Journal of Biological Chemistry 277(34):
effects such as reversing left ventricular dysfunction, decreasing 30409–30412.
muscle breakdown, and decreasing weakness. However, the Panchal AR, Comte B, Huang H, et al. (2000) Partitioning of pyruvate between oxidation
effects of medium-length odd-chain fatty acids as potential and anaplerosis in swine hearts. American Journal of Physiology 279(5):
H2390–H2398.
anaplerotic substrates for the treatment of other forms of
Pound KM, Sorokina N, Ballal K, et al. (2009) Substrate–enzyme competition attenuates
heart failure have not yet been assessed. upregulated anaplerotic flux through malic enzyme in hypertrophied rat heart and
Pyruvate carboxylase deficiency is a rare autosomal reces- restores triacylglyceride content: Attenuating upregulated anaplerosis in
sive disease that affects a variety of organs, including the liver, hypertrophy. Circulation Research 104: 805–812.
kidney, brain, skeletal muscle, heart, and adipose tissue. The Roe CR, Sweetman L, Roe DS, David F, and Brunengraber H (2002) Treatment of
cardiomyopathy and rhabdomyolysis in long-chain fat oxidation disorders using an
disorder is characterized by impaired gluconeogensis, lactic anaplerotic odd-chain triglyceride. Journal of Clinical Investigation 110: 259–269.
acidosis, and, depending on the severity of the disease, neuro- Russell R and Taegtmeyer H (1991) Changes in citric acid cycle flux and anaplerosis
logic manifestations ranging from minimal neurologic antedate the functional decline in isolated rat hearts utilizing acetoacetate. Journal of
abnormalities to profound psychomotor retardation. In the Clinical Investigation 87: 384–390.
Russell R and Taegtmeyer H (1991) Pyruvate carboxylation prevents the decline in
most severe form of the disease, patients die within the first
contractile function of rat hearts oxidizing acetoacetate. American Journal of
few weeks of life. Nutritional treatment of the disease with Physiology 261: H1756–H1762.
anaplerotic odd-chain triglycerides, such as triheptanoin, or Sorokina N, O’Donnell JM, McKinney RD, et al. (2007) Recruitment of compensatory
aspartate has been shown to prolong life. pathways to sustain oxidative flux with reduced carnitine palmitoyltransferase I
activity characterizes inefficiency in energy metabolism in hypertrophied hearts.
Circulation 115: 2033–2041.
Summary and Perspective
Efficient energy transfer in the mammalian cell is linked to a
series of moiety-conserved cycles, including the citric acid
Arachidonic Acid Regulated Calcium Channel
T J Shuttleworth, University of Rochester Medical Center, Rochester, NY, USA
ã 2013 Elsevier Inc. All rights reserved.
Different Modes of Ca2+ Entry and the Discovery raises several questions as to its ability to function as the
of the ARC Channels exclusive pathway of agonist-activated Ca2þ entry in other
cell types. These include a requirement for a rather profound
The receptor-activated entry of Ca2þ in nonexcitable cells plays a depletion of intracellular stores before any activation begins,
key role in the generation and modulation of the resulting the subsequent relatively slow rate of activation, and evidence
intracellular Ca2þ signals that are known to be responsible for indicating that such activation occurs in an essentially all-or-
a wide variety of critical cellular responses, including cell growth none fashion. Together, these features are difficult to reconcile
and proliferation, differentiation, movement, secretion, metab- with the predicted requirement of a finely regulated, graded
olism, and cell death. Our understanding of the underlying Ca2þ response in order to accurately coordinate the appropriate
mechanisms and pathways involved in such entry began with cellular response to any particular increase in the Ca2þ signal.
the work of Putney in the mid-1980s and his development On a more general level, it should also be remembered that
of the concept of capacitative, or store-operated, Ca2þ entry, depletion of the intracellular Ca2þ stores can be induced by a
where activation of the entry of Ca2þ is strictly a consequence variety of different events, many of which are unrelated to the
of the depletion of intracellular Ca2þ stores. Demonstration of normal, physiologically relevant, agonist-activated signaling
the presence of such store-operated entry pathways in almost all pathways. For example, store depletion can result from an inhi-
cell types examined has led to the widely held belief that this bition of the sarcoplasmic and endoplasmic calcium (SERCA)
specific mode of Ca2þ entry represents the major, if not the only, pump such as may occur during ischemia, or an increase in
mode of such receptor-activated entry in nonexcitable cells. passive leak pathways such as those provided by the presenilins,
However, examination of the literature reveals that direct evi- as well as exposure to oxidants and other cellular stressors.
dence demonstrating a principal role for such pathways in the Finally, the absolute requirement for a sustained depletion of
various receptor-activated Ca2þ signals and responses seen in intracellular Ca2þ stores in order to activate these conductances
these different cell types is limited. More specifically, although is potentially problematic, as such depletion can seriously
various conductances have been proposed to provide the route impact various vital cell processes, the most obvious being the
for store-operated Ca2þ entry in different cells types, the most correct folding and processing of secretory and membrane pro-
thoroughly characterized store-operated Ca2þ channel remains teins. Together, consideration of these issues suggests that,
the Ca2þ-release activated Ca2þ (CRAC) channel. This conduc- although store-operated modes of Ca2þ entry can be demon-
tance was originally identified in T lymphocytes and in mast strated in almost all cell types, their principal role might lie in
cells, and here it is clear that the activity of the CRAC channels is some process other than normal signaling in response to agonist
critical for the physiological activation of these cells. However, stimulation. Indeed, given their exclusive dependence on the
examination of the properties of this channel and its activation depletion of intracellular Ca2þ stores for activation, the most
127
128 Bioenergetics | Arachidonic Acid Regulated Calcium Channel
likely primary role for such store-operated entry pathways would 0.1
seem to be the maintenance of adequate levels of Ca2þ in the ER. Time (s)
0
A demonstrated that the activation of the channel by arachidonic studies utilizing a cell-permeable stearated version of a synthetic
acid is exclusively via an action of the fatty acid at the inner face of peptide that disrupts the binding of PKA to AKAPs (st-Ht31
the membrane. peptide) both inhibited normal ARC channel currents and
Since their initial discovery and characterization almost blocked the above effects of forskolin on the currents.
10 years ago, ARC channels (or, at least, conductances display-
ing all the key features of these channels) have been described in
a wide variety of different cell types, including many common Molecular Nature (and Activation) of ARC Channels
cell lines (HEK293, HeLa, COS, and RBL), SY6Y neuroblastoma
cells, K562 erythroleukemia cells, as well the exocrine parotid Although the CRAC channel had been originally described and
and pancreatic acinar cells, and the endocrine pancreatic b cells. characterized in the early 1990s, the molecular nature of its
In many of these cell types, the ARC channels coexist with store- structure and regulation were unknown until the recent identifi-
operated channels, including the biophysically very similar cation of stromal interacting molecule 1 (STIM1) as the sensor
CRAC channels. Nevertheless, it can be demonstrated that of store depletion, and the discovery of Orai1 as the molecule
these two coexisting channels represent entirely distinct entities. that forms the CRAC channel itself. These studies revealed that
Thus, using the whole-cell patch clamp mode in HEK293 cells, it STIM1 located in the membrane of the endoplasmic reticulum
has been shown that maximal activation of the CRAC channels (ER) sensed the depletion of Ca2þ in these stores via a luminal
by store depletion has no effect on the magnitude of the subse- Ca2þ-binding EF-hand motif present in the N-terminal region of
quently activated ARC channel currents induced by addition of the protein. Loss of Ca2þ from this motif results in the oligo-
exogenous arachidonic acid – in other words, at least under merization of STIM1 and its translocation to regions of the ER
whole-cell patch clamp conditions, the two currents are strictly that lie adjacent to the plasma membrane. Here, it interacts with
additive in the same individual cell. Orai1 resulting in the activation of the CRAC channels.
Given this clearly demonstrated role of STIM1 as the ER
Ca2þ sensor in the activation of the CRAC channels, it would
Reciprocal Regulation of ARC Channels and be expected that STIM1 would be unlikely to play any role in
CRAC Channels the activation of the store-independent ARC channels. How-
ever, experiments showed that ARC channel currents were
As described above, under whole-cell patch clamp conditions, increased by overexpression of STIM1 and reduced by siRNA
currents through the ARC channels and coexisting store- knock-down of the endogenous protein, in a manner that was
operated CRAC channels are strictly additive. However, it is indistinguishable from that seen with the CRAC channels pres-
important to note that such additivity of the two currents does ent in the same cells. Reconciliation of these unexpected results
not appear to occur in the intact cell. The reason for this began with the realization that the STIM1 protein is not exclu-
difference is that, in the whole-cell patch clamp configuration, sively restricted to the ER membrane. In fact, it was originally
the presence of buffers in the pipette solution clamps the intra- identified as a cell surface (i.e., plasma-membrane) protein
cellular Ca2þ concentration at resting levels while, in the normal present in the stromal cells of the bone marrow, where it was
intact cell situation, activation of store-operated Ca2þ entry typi- involved in interactions between these cells and hematopoietic
cally results in a sustained elevation of intracellular Ca2þ. Studies cells (specifically pre-B lymphoidal cells). Studies have shown
have shown that this sustained elevation in intracellular Ca2þ that the pool of STIM1 that is resident in the plasma membrane
results in the activation of the Ca2þ-calmodulin-dependent is relatively small (approximately 10–25% depending on cell
phosphatase calcineurin and this, in turn, induces an inhibition type), and its delivery to this location is strictly dependent
of ARC channel activity. Consequently, in the intact cell, activa- on N-linked glycosylation at two sites within the N-terminal
tion of the store-operated channels (e.g., CRAC channels) will region of the protein (Asn131 and Asn171). To examine the
result in an inhibition of the ARC channels, a process that has effect of specifically eliminating this cell-surface pool of STIM1,
been described as the ‘reciprocal regulation of Ca2þ entry’. cells treated with an siRNA targeting the endogenous STIM1
The discovery that the phosphatase calcineurin inhibits the were transfected with an siRNA-resistant STIM1 construct in
ARC channels suggested that the activity of these channels must which these two glycosylation sites were mutated (N131Q and
be dependent, in some way, on phosphorylation. Subsequent N171Q) – thereby effectively replacing the native STIM1 with
studies showed that the specific kinase responsible was the cyclic the mutant version. Examination of both ARC and CRAC
AMP-dependent protein kinase A (PKA). Thus, the currents currents in these cells revealed that while CRAC channel cur-
through the ARC channels measured in HEK293 cells main- rents were unaffected, the ARC channel currents in the same
tained under normal culture conditions following addition of cells were profoundly inhibited (Figure 2). These data clearly
low concentrations of arachidonic acid are inhibited by pre- established that it is the pool of STIM1 resident in the plasma
incubation with the cell-permeable PKA-specific inhibitory pep- membrane that is essential for activation of the ARC channels.
tide myristolated PKI but are unaffected by inhibition of either As yet, exactly how the plasma membrane STIM1 acts to regu-
protein kinase C (with calphostin) or protein kinase G (with late the activation of the ARC channels is unknown. However,
KT5823). Correspondingly, the addition of forskolin, particu- it is important to note that, in the case of this plasma mem-
larly after induction of the calcineurin-mediated dephosphory- brane pool of STIM1, the Ca2þ-binding N-terminal EF-hand
lation, resulted in enhanced arachidonic acid-activated ARC motif will lie in the extracellular environment. Given the high
channel currents. In addition, it has been shown that this action and relatively stable Ca2þ concentrations of this environment,
of PKA in modulating ARC channel activity involves a member it is clear that the EF-hand of this pool of STIM1 would always,
of the A-kinase anchoring protein (AKAP) family. For example, under normal circumstances, be in the Ca2þ-bound state.
130 Bioenergetics | Arachidonic Acid Regulated Calcium Channel
cont K/D K/D + mut Orai3 are required for the formation of the functional ARC
channel. Thus, overexpression of Orai1 in cells stably expressing
100
STIM1 results, not only in markedly increased CRAC channel
STIM1
currents but also in similar increases in ARC channel currents.
Correspondingly, expression of the dominant-negative (E106Q)
75 Orai1 mutant effectively eliminates both CRAC and ARC
Deglycos-STIM1
channel currents. However, expression of the corresponding
dominant-negative E81Q Orai3 mutant essentially eliminates
(a)
currents through the ARC channels and has no effect on the
0.8 0.8 CRAC channel currents in the same cells.
0.7 0.7
Inward current @ −80 mV (pA/pF)
−3
mV
0
−100 −60 −20 20 60
−2
−2
pA/pF
2 µM
−1 −4 pA/pF
4 µM
−6
8 µM
0
0 2 4 6 8 10 −8
(a) AA conc. (µM) (b)
−1.75
mV
0
−100 −60 −20 20 60 −1.5
Gd3+ −2
−4 pA/pF
−1
−6 −0.75
−8 −0.5
(c)
−0.25
0
(d) 31311 31113
Figure 4 The features of the currents induced by expression of the appropriate Ora1/Orai3 heteropentamers precisely duplicate those of the
endogenous ARC channels. (a) Activation of the currents induced following expression of the concatenated 31311 pentamer in STIM1-stable cells
occurs at the same low concentrations of exogenous arachidonic acid as that reported for the endogenous ARC channels. Shown are the mean SE
of the inward currents at 40 mV activated by the indicated concentrations arachidonic acid. (b) The resulting current–voltage relationships at all
concentrations of arachidonic acid display marked inward rectification and very positive (>þ 60 mV) reversal potentials. (c) The arachidonic
acid-activated currents in STIM1-stable cells expressing the concatenated 31311 heteropentamer are completely blocked by 5 mM gadolinium (Gd3þ).
(d) Activation of the increased arachidonic acid-induced currents seen on expression of the 31113 and 31311 pentamers is entirely dependent on STIM1
in the plasma membrane. Shown are inward current density at 40 mV in STIM1-stable cells treated with siRNA to STIM1, and transfected with a
wild-type STIM1 (white bar), together with the same siRNA-treated cells expressing either the 31311 or 31113 concatenated pentamer, as indicated,
after transfection with either an siRNA-resistant wild-type STIM1 (black bars) or with an siRNA-resistant glycosylation mutant STIM1 (gray bars).
Reproduced from Mignen O, Thompson JL, and Shuttleworth TJ (2009) The molecular architecture of the arachidonate-regulated Ca2þ-selective
ARC channel is a pentameric assembly of Orai1 and Orai3 subunits. Journal of Physiology 587: 4181–4197.
of different cell types, and their potential to provide a unique, manner would likely be profoundly impacted by the relative
store-independent, route for agonist-activated Ca2þ entry in levels of expression of either of these components – resulting
such cells is clear. channels of unknown composition and/or stoichiometry. In
An additional point to note is that the simple demonstra- addition to Orai1 and Orai3, the ARC channels also require
tion of a dependence on STIM1 and/or Orai1 for any particular adequate STIM1 in the plasma membrane for their activation.
cellular response or effect is not sufficient to definitively con- Limitations in any one of these components would be expected
clude that such a response involves store-operated Ca2þ entry, to have significant impact on overall channel activity. Moreover,
or the activity of CRAC channels, as both STIM1 and Orai1 as discussed above, studies have shown that ARC channel activ-
proteins are also essential for the activity of the ARC channels. ity is also dependent on a balance between a PKA-dependent
Consequently, proposals to target these proteins therapeuti- phosphorylation which requires an AKAP and a calcineurin-
cally as a means of specifically affecting CRAC channel activity mediated dephosphorylation. Consequently, factors that influ-
are not valid. In addition, it is clear that caution must be ence the balance between these opposing actions would likely
applied to studies involving the simple overexpression of indi- profoundly impact the resulting entry of Ca2þ through the
vidual components of the overall ARC channel complex and its channels, with the obvious effects on the resulting agonist-
regulators. Thus, we already know that the ARC channel induced Ca2þ signals generated in the cell.
requires both Orai1 and Orai3 subunits for its formation, but As discussed above, the specific properties and features
the ability of these subunits to assemble in the appropriate of the ARC channels suggest that they are uniquely suited to
Bioenergetics | Arachidonic Acid Regulated Calcium Channel 133
provide a critical role in agonist-activated Ca2þ entry, particularly Mignen O, Thompson JL, and Shuttleworth TJ (2005) Arachidonate-regulated
under conditions where the sustained depletion of intracellular Ca2þ-selective (ARC) channel activity is modulated by phosphorylation and
involves an A-kinase anchoring protein. Journal of Physiology 567: 787–798.
Ca2þ stores is either unlikely or inappropriate. Consistent with
Mignen O, Thompson JL, and Shuttleworth TJ (2007) STIM1 regulates Ca2þ entry
this, the activity of these channels has been shown to play a key via arachidonate-regulated Ca2þ-selective (ARC) channels without store-
role in important physiological responses of diverse cell types, depletion or translocation to the plasma membrane. Journal of Physiology 579:
including the insulin-secreting b cells, and the exocrine cells of 703–715.
the parotid and pancreas. Undoubtedly, as more groups begin to Mignen O, Thompson JL, and Shuttleworth TJ (2008) Both Orai1 and Orai3 are
essential components of the arachidonate-regulated Ca2þ-selective ARC channels.
study these channels, additional roles will be revealed. Journal of Physiology 586: 185–195.
Mignen O, Thompson JL, and Shuttleworth TJ (2009) The molecular architecture
of the arachidonate-regulated Ca2þ-selective ARC channel is a pentameric
See also: Bioenergetics: ORAI Store-Operated Calcium Channel; assembly of Orai1 and Orai3 subunits. Journal of Physiology 587: 4181–4197.
Store-Operated Calcium Channels. Shuttleworth TJ (1999) What drives calcium entry during [Ca2þ]i oscillations?
Challenging the capacitative model. Cell Calcium 25: 237–246.
Shuttleworth TJ (2009) Arachidonic acid, ARC channels, and Orai proteins.
Cell Calcium 45: 602–610.
Further Reading Shuttleworth TJ, Thompson JL, and Mignen O (2004) ARC channels – a novel pathway
for receptor-activated calcium entry. Physiology 19: 355–361.
Dziadek MA and Johnstone LS (2007) Biochemical properties and cellular localisation Shuttleworth TJ, Thompson JL, and Mignen O (2007) STIM1 and the noncapacitative
of STIM proteins. Cell Calcium 42: 123–132. ARC channels. Cell Calcium 42: 183–191.
Manji SSM, Parker NJ, Williams RT, et al. (2000) STIM1: A novel phosphoprotein Wolf BA, Turk J, Sherman WR, and McDaniel ML (1986) Intracellular
located at the cell surface. Biochimica et Biophysica Acta 1481: 147–155. Ca2þmobilization by arachidonic acid. Comparison with myo-inositol 1,4,5-
Mignen O and Shuttleworth TJ (2000) IARC, a novel arachidonate-regulated, trisphosphate in isolated pancreatic islets. Journal of Biological Chemistry 261:
noncapacitative Ca2þ entry channel. Journal of Biological Chemistry 3501–3511.
275: 9114–9119. Yeung-Yam-Wah V, Lee AK, Tse FW, and Tse A (2010) Arachidonic acid stimulates
Mignen O, Thompson JL, and Shuttleworth TJ (2003) Ca2þ selectivity and fatty acid extracellular Ca2þ entry in rat pancreatic beta cells via activation of the
specificity of the noncapacitative, arachidonate-regulated Ca2þ (ARC) channels. noncapacitative arachidonate-regulated Ca2þ (ARC) channels. Cell Calcium
Journal of Biological Chemistry 278: 10174–10181. 47: 77–83.
ATP in Plant Mitochondria: Substrates, Inhibitors, and Uncouplers
K L Soole and R I Menz, Flinders University, Adelaide, SA, Australia
ã 2013 Elsevier Inc. All rights reserved.
Adenosine triphosphate (ATP) is the energy carrier of the cell turn of the citric acid cycle, one ATP is produced directly by
and in eukaryotic cells is synthesized via photosynthesis and substrate-level phosphorylation, not guanosine triphosphate
respiration. Within respiration, there is a low level of ATP (GTP) as in mammalian mitochondria. Matrix NADH is oxi-
synthesis associated with glycolysis in the cytoplasm; however, dized by the ETC and more ATP is produced via oxidative
the majority of ATP is synthesized via oxidative phosphoryla- phosphorylation.
tion which occurs within mitochondria, specifically via the Oxidative phosphorylation occurs via the interaction of
operation of an electron transport chain (ETC) in the inner large lipoprotein complexes of the ETC and smaller mobile
mitochondrial membrane. In mammals, flux through the respi- electron carriers found in the inner mitochondrial membrane
ratory pathway is tightly regulated by the ATP/adenosine (Figure 1). NADH is oxidized by complex I, which donates its
diphosphate (ADP) ratio or adenylate energy charge of the electrons to a mobile lipophilic electron carrier, ubiquinone.
cell. Plants, unlike mammals, must synthesize all of their cellu- Complex II or succinate dehydrogenase also donates electrons
lar components. In plants, the presence of a nonphosphorylat- to the ubiquinone pool. Reduced ubiquinone (or ubiquinol) is
ing pathway in the mitochondrial ETC and an uncoupler oxidized by complex III via the Q-cycle and reduces the mobile
protein in the inner membrane overcomes this restriction peripheral protein cytochrome c. By interacting with complex
by adenylate control. In plants, respiration not only is impor- IV (cytochrome oxidase), the electrons carried by cytochrome c
tant for energy production but also has a major role in bio- are donated to the terminal electron acceptor, oxygen. During
synthesis and anabolic reactions, in programmed cell death, these electron-transfer events, protons are translocated from
and, more recently, has been implicated as stress response the matrix side of the inner membrane to the intermembrane
signaling sensor. space at complexes I, III, and IV, thus establishing the
proton-motive force (pmf or DmHþ). If ADP is bound to the
F0F1-ATPase in the inner membrane, then protons pass
Mitochondrial ETC in Plants through this complex and the energy within the pmf is used
to synthesize ATP. Once ATP is synthesized, it is then exported
Sucrose and starch are converted to metabolites that feed into out of the matrix in exchange for another ADP via the adenine
the early steps of glycolysis which occurs in the cytoplasm. nucleotide translocase. Thus, the flow of electrons and, hence,
The end products of glycolysis in plants can be either pyruvate oxygen consumption are tightly under control of cellular ADP
or malate, the latter being formed by the action of phosphoe- levels. This is called acceptor or adenylate control.
nol pyruvate carboxylase and malate dehydrogenase, which In plant mitochondria, additional protein complexes
together bypass pyruvate kinase. Once within the mitochon- are found associated with this ETC. They are distinct from
drial matrix, pyruvate is metabolized by pyruvate dehydroge- complexes I to V, in that they participate in the transfer of
nase and the enzymes of the citric acid cycle. Being a substrate electrons from NADH to oxygen, but do not contribute to
for mitochondrial malate dehydrogenase, malate can either the pmf. These enzymes are the alternative or nonphosphor-
feed into the citric acid cycle or be metabolized to pyruvate ylating reduced nicotinamide adenine dinucleotide phosphate
via nicotinamide adenine dinucleotide (NAD)-malic enzyme. (NAD(P)H) dehydrogenases (NDE and NDI), which donate
There must be a balance between these processes, because of electrons to the ubiquinone pool and the alternative oxidase
the poor forward equilibrium of malate dehydrogenase, the (AOX), which accepts electrons from reduced ubiquinone
accumulation of oxaloacetate would prevent further malate (Figure 1).
metabolism. The net result of these reactions is the production Evidence for the alternative nonphosphorylating NAD(P)H
of NADH and FADH2 (via succinate dehydrogenase). During a dehydrogenases comes from the ability of isolated plant
141
142 Bioenergetics | ATP in Plant Mitochondria: Substrates, Inhibitors, and Uncouplers
NAD(P)H H+
H+ NADH Complex V
H+ H+
H+ H+
O2
NADH O2 2H2O Complex III 2H2O UCP
α β α
NADH Alternative Complex IV
NDI 1 oxidase
Complex I NAD(P)H
Succinate
NDI 2 ADP + Pi ATP
Complex II
Cyt c Matrix
Ubiquinone
Figure 1 A schematic representation of the routes of NAD(P)H oxidation and the electron transport chain (ETC) of plant mitochondria. NDI refers
to internal matrix-facing nonphosphorylating NAD(P)H dehydrogenase, and NDE refers to external cytosolic nonphosphorylating NAD(P)H
dehydrogenase. UCP refers to the uncoupling protein. Reproduced from Rasmusson AR, Soole KL, and Elthon TE (2004) Alternative NAD(P)H
dehydrogenases in plant mitochondria. Annual Review of Plant Biology 54: 23–39.
mitochondria to oxidize externally supplied NAD(P)H, allow the release of biosynthetic intermediates from the respi-
which cannot pass through the inner membrane. The external ratory pathway, independent of energy charge of the cell. This
cytosolic-facing NAD(P)H dehydrogenase (NDE) feeds directly role of the nonphosphorylating pathway is hypothesized and
into the ubiquinone pool, as external NAD(P)H oxidation has has not been clearly demonstrated in vivo.
an ADP/O ratio equivalent to succinate of less than 2.0. Matrix
NADH oxidation in plants has a component which is insensi-
tive to inhibition by the complex I inhibitor, rotenone. This Substrates for ATP Synthesis
oxidation is catalyzed by internal inner mitochondrial mem-
brane transdehydrogenases (NDI). The rotenone-insensitive The plant mitochondrial ETC can oxidize matrix NADH and
alternative matrix NADH oxidation has an ADP/O ratio also NADPH to a much lesser extent. The source of this NADH is
similar to succinate indicating that NDI also feeds electrons from pyruvate dehydrogenase and the citric acid cycle, and
into the ubiquinone pool, bypassing proton pumping at com- plants have the full complement of these enzymes in addition
plex I. The AOX is a cyanide and antimycin A-resistant ubiqui- to other unique enzymes. The presence of matrix pools of
nol oxidase that catalyzes the reduction of oxygen to water with NADPH is indicative of the mitochondria’s anabolic role.
electrons from ubiquinol and, thus, bypasses the proton NADP-dependent enzymes involved in folate and thymidylate
pumps at complexes III and IV. Sequence analysis of the synthesis such as NADP-dihydrofolate reductase and methy-
genes putatively encoding NADH(P)H dehydrogenases in var- lene tetrahydrofolate dehydrogenase have been found in plant
ious plant species has separated this gene family into three mitochondria and their continued operation requires the turn-
subfamilies, NDA, NDB, and NDC, based on their homology over of the NADPH generated via NDI2. Apart from NAD-
to the yeast and bacterial gene sequences. There is functional dependent isocitrate dehydrogenase, there is also another
evidence that links NDA to NDI activity and the NDB gene NADP-dependent form in the matrix; however, its role in
family to NDE activities. It is as yet unknown whether NDC plant metabolism is not yet clear. Additionally, via the action
encodes an NDI- or NDE-like activity. of a soluble transhydrogenase detected recently in pea leaf
Thus, it is possible to have electron transport/transfer with matrix, the mitochondrial oxidation of any strictly NAD-linked
no ATP synthesis in plant mitochondria. Therefore, due to the substrates such as pyruvate would also be able to produce
bypasses that exist around key regulatory sites in glycolysis, NADPH.
plant respiration can be totally independent of respiratory Another unique enzyme found in plant mitochondria
control, which gives plants great metabolic flexibility. This is glycine decarboxylase, which generates NADH in the matrix,
flexibility, which results in the loss of adenylate control of is part of photorespiratory cycle and is important in photo-
respiration by the energy status of the cell, can theoretically synthetic metabolism. It is accepted that the mitochondrial
Exploring the Variety of Random
Documents with Different Content
We should have him back
Who told the Winter’s Tale to do it for us.
Tennyson, Prologue of The Princess.
Wisdom Persecuted.
Anaxagoras of Clazomēnæ held opinions in natural science so far in
advance of his age that he was accused of impiety, cast into prison,
and condemned to death. It was with great difficulty that Perĭclês
got the sentence commuted to fine and banishment.
Averrois, the Arabian philosopher, was denounced as a heretic, and
degraded, in the twelfth Christian century (died 1226).
Bacon (Friar) was excommunicated and imprisoned for diabolical
knowledge, chiefly on account of his chemical researches (1214-
1294).
Bruno (Giordano) was burnt alive for maintaining that matter is the
mother of all things (1550-1600).
Crosse (Andrew), electrician, was shunned as a profane man,
because he asserted that certain minute animals of the genus Acarus
had been developed by him out of inorganic elements (1784-1855).
Dee (Dr. John) had his house broken into by a mob, and all his
valuable library, museum, and mathematical instruments destroyed,
because he was so wise that “he must have been allied with the
devil” (1527-1608).
Feargil. (See “Virgilius.”)
Galileo was imprisoned by the Inquisition for daring to believe that
the earth moved round the sun and not the sun round the earth. In
order to get his liberty, he was obliged to “abjure the heresy;” but as
the door closed he muttered, E pur si muove (“But it does move,
though”), (1564-1642).
Gerbert, who introduced algebra into Christendom, was accused of
dealing in the black arts, and was shunned as a “son of Belial.”
Grosted or Grosseteste, bishop of Lincoln, author of some two
hundred works, was accused of dealing in the black arts, and the
pope wrote a letter to Henry III., enjoining him to disinter the bones
of the too-wise bishop, as they polluted the very dust of God’s acre
(died 1253).
Faust (Dr.), the German philosopher, was accused of diabolism for
his wisdom so far in advance of the age.
Peyrere was imprisoned in Brussels for attempting to prove that
man existed before Adam (seventeenth century).
Protagoras, the philosopher, was banished from Athens, for his
book On the Gods.
Socratés was condemned to death as an atheist, because his
wisdom was not in accordance with that of the age.
Virgilius, bishop of Saltzburg, was compelled by Pope Zachary to
retract his assertion that there are other “worlds” besides our earth,
and other suns and moons besides those which belong to our
system (died 784).
Geologists had the same battle to fight, and so had Colenso,
bishop of Natal.
Wise (The).
Albert II., duke of Austria, “The Lame and Wise” (1289, 1330-
1358).
Alfonso X. of Leon and Castile (1203, 1252-1284).
Charles V. of France, Le Sage (1337, 1364-1380).
Che-Tsou of China (*, 1278-1295).
Comte de las Casas, Le Sage (1766-1842).
Frederick, elector of Saxony (1463, 1544-1554).
James I., the “Solomon” of England (1566, 1603-1625).
John V., duke of Brittany, “The Good and Wise” (1389, 1399-
1442).
Wise Men (The Seven): (1) Solon of Athens, (2) Chilo of Sparta,
(3) Thalês of Milētos, (4) Bias of Priēnê, (5) Cleobūlos of Lindos, (6)
Pittăcos of Mitylēnê, (7) Periander of Corinth, or, according to Plato,
Myson of Chenæ. All flourished in the sixth century B.C.
Wise Men of the East. Klopstock, in The Messiah, v., says there
were six “Wise Men of the East,” who, guided by the star, brought
their gifts to Jesus, “the heavenly babe,” viz., Ha´dad, Selima, Zimri,
Mirja, Be´led and Sun´ith. (See Cologne, Three Kings of.)
Wisest Man. So the Delphic oracle pronounced Soc´ratês to be.
Socratês modestly made answer, ’Twas because he alone had learnt
this first element of truth, that he knew nothing.
Work-room (My).
Worthy, in love with Melinda, who coquets with him for twelve
months, and then marries him.--G. Farquhar, The Recruiting Officer
(1705).
Worthy (Lord), the suitor of Lady Reveller, who was fond of play.
She became weary of gambling, and was united in marriage to Lord
Worthy.--Mrs. Centlivre, The Basset Table (1706).
Wray (Enoch), “the village patriarch,” blind, poor, and 100 years
old; but reverenced for his meekness, resignation, wisdom, piety,
and experience.--Crabbe, The Village Patriarch (1783).
Wynken.
Wynken, Blynken and Nod one night,
Sailed off in a wooden shoe--
Sailed on a river of misty light
Into a sea of dew.
“Where are you going, and what do you wish?”
The old moon asked the three.
“We have come to fish for the herring-fish
That live in this beautiful sea,
Nets of silver and gold have we,”
Said Wynken, Blynken and Nod.
Eugene Field, A Little Book of Western Verse, (1889).
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