1 s2.0 S0263224120312914 Main
1 s2.0 S0263224120312914 Main
Measurement
journal homepage: www.elsevier.com/locate/measurement
A R T I C L E I N F O A B S T R A C T
Keywords: Several efforts have been made in finding alternate sources of energy. The production of bio-fuel from the ex
Computer vision tracts of plants like Jatropha Curcas L. and Pongamia Pinnata L. is most favored among all. But, due to certain
Image classification biotic factors, the growth of these plants get affected, therefore reducing the overall production. To formulate the
Image segmentation
demand and automate the disease diagnosis system a Computer vision methodology is proposed in this work. For
Machine learning
Neural network
disease region segmentation, a Hybrid Neural Network incorporated with Superpixel clustering is proposed.
Simple linear iterative clustering Color, shape, and texture features are evaluated using different algorithms. Finally, seven different Machine
Learning techniques were used to classify the images among three categories. Segmentation results with average
Specificity = 0.9534, 0.9795, Sensitivity = 0.9637, 0.9805 and average Classification accuracy = 0.9857 ±
0.0285, 0.9095 ± 0.0688 and 0.9607 ± 0.0256 for both the plants when evaluated separately proved the su
premacy of the proposed work.
* Corresponding author.
E-mail address: [email protected] (U.P. Singh).
https://doi.org/10.1016/j.measurement.2020.108796
Received 15 September 2020; Received in revised form 17 November 2020; Accepted 25 November 2020
Available online 1 December 2020
0263-2241/© 2020 Elsevier Ltd. All rights reserved.
S.S. Chouhan et al. Measurement 171 (2021) 108796
Simple Linear Iterative Clustering (SLIC) algorithm the pixels with (continued )
similar attributes were initially clustered, and then using the Adaptive Algorithm 1. Basic steps for leaf disease segmentation and classification
Linear Neuron (ADALINE) network the disease region is segmented from 3. SLIC algorithm for grouping of pixels into a similar type of cluster and pixel labeling using
the plant leaves images. Color, shape, and texture features were the level of equivalence
extracted using different algorithms. Finally, seven different Machine 4. Disease segmentation using Adaptive Linear Neural network
Learning (ML) classifiers had been used for classification. A three-way 5. Feature extraction using L*a*b*, SIFT, and LBP algorithms
6. Ternary classification of leaf images using seven machine learning classifiers
classification methodology was adopted that first classifies the images
7. Results evaluation and comparison using different metrics
among two discrete plant leaf classes, then among healthy and diseased
for Jatropha Curcas L. plant and at last healthy and diseased for Pongamia
The block diagram for the proposed method has been depicted in Fig. 1.
Pinnata L. plant respectively.
The rest of the paper has been structured as follows: Section 2 pre
2.2. Data acquisition
sents the various materials and methods used in this work, including
basic methodology or the algorithm used for segmentation and classi
For the proposed work, Jatropha Curcas L. and Pongamia Pinnata L.
fication, data and image acquisition filed and setup, Section 3 introduces
plant leaf images were acquired from the beautiful campus of Shri Mata
the proposed hybrid neural network, feature extraction algorithms, and
Vaishno Devi, University (32◦ 56′ 30.6′′ N 74◦ 57′ 14.4′′ E), Katra, 182320,
different machine learning algorithms. The experimental evaluation and
Jammu and Kashmir, India [18]. The site location has been shown in
results for disease segmentation and classification have been discussed
Fig. 2. These plants are well known for their higher ecological, medical,
in Section 4. The summary and limitations of the proposed work is
and economical importance. Another interesting purpose for selecting
discussed in Section 5. Finally, Section 6 concludes the manuscript and
these plants is of their richness in bio-fuel (energy) production. This
with possible future improvements.
dataset consists of leaf images separated among healthy and diseased
classes. A total number of 133 healthy and 124 diseased leaf images for
2. Materials and methods
Jatropha Curcas L. and a total number of 322 healthy and 276 diseased
leaf images for Pongamia Pinnata L. were acquired for segmentation and
2.1. Basic methodology for leaf diseases segmentation and classification
classification. All the captured images are of uniform size. Both plant
images belong to the P6 and P7 class of our data repository available
The different steps used for the disease segmentation and classifi
online at Mendeley Data (https://data.mendeley.com/datasets/
cation of Jatropha Curcas L. and Pongamia Pinnata L. plant leaf images
hb74ynkjcn/4).
has been given by Algorithm 1. Beginning with the process the leaf
images were first acquired and then preprocessed to make them uniform
2.3. Image acquisition setup
and delimit the complications of images. Then the pixel of images is
divided and grouped into several blocks of similar pixels by using the
Fig. 3 shows the image acquisition setup. All the plant’s leaf images
SLIC algorithm [15–17]. In the next step, the initially segmented
were captured with the help of a setup that was installed in a room. This
diseased images were processed by our proposed hybrid neural network
was done to reduce the effect of unwanted information like background
for extracting the region of interest. Also, the labeling of pixels among
details, variable atmospheric conditions, the taxonomy of plants, etc.
different classes has been defined by the level of equivalence. The
Also, to maintain the uniformity and to eliminate the surrounding illu
different features like color, texture, and shapes were extracted using
mination conditions four white color led lamps were used. The leaf
different algorithms. After feature extraction, a three-way classification
images were first cleaned for the removal of dust. Nikon D5300 digital
strategy has been adopted for the classification between two plant leaf,
camera was used for maintaining the high quality of images. All the
classification among healthy and diseased classes for Jatropha Curcas L.,
devices were wirelessly connected. Then the image acquisition process
and classification among healthy and diseased classes for Pongamia
has been carried out by maintaining the classes of the images differen
Pinnata L. plant images separately. Finally, the results for segmentation
tiating between the plants, healthy, and diseased leaves. The camera was
and classification were evaluated and compared with different methods
fixed at one position and angle. This was done to maintain the unifor
by using different metrics.
mity in the database [18].
Algorithm 1. Basic steps for leaf disease segmentation and classification
1. Acquire the healthy and diseased leaves of Jatropha Curcas L. and Pongamia Pinnata L. 3. Proposed hybrid model
2. Image prepossessing like resizing, contrast enhancement, etc.
(continued on next column) In this section, the various steps followed for leaf disease
2
S.S. Chouhan et al. Measurement 171 (2021) 108796
The height and the width was fixed to 10th times proportional to orig
inal image measurements by using the resize function. This method
upholds the quality of the images. Further, for better analysis, the
contrast of all the images had been enhanced by using the Histogram of
Gradients (HoG) approach [19].
where,
√̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅
dlab = (li − lk )2 + (ai − ak )2 + (bi − bk )2 (2)
and
√̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅̅
dxy = (xi − xk )2 + (yi − yk )2 (3)
m is the weight factor within the range [1,20]. (li , ai , bi ) is the color
value for pixel i at position (xi , yi ) for the acquired image.
Since, the segmented regions maintain the similarity of attributes
and continuity within every patch, pixels in a cluster are then recognized
by its mean value. This mean value also acts as a mean filter, which in
turn also reduces the sensitivity against noise [17,20,21]. Fig. 4 shows a
sample superpixel clustered image.
3
S.S. Chouhan et al. Measurement 171 (2021) 108796
∂Ek
= − (TOk − OOk ) (8)
∂OOk
∂OOk
=1 (9)
∂OIk
∂OIk
= HOj (10)
∂wjk
Using Eqs. (8), (9) and (10), Eq. (7) yield
∂E 1∑P
∂
= (T − OOk )2
∂wjk P k=1 ∂wjk Ok
Fig. 4. Initial segmentation using SLIC (The superpixel blocks).
∂Ek
= − (TOk − OOk )HOj (11)
connecting weight between ith unit of the input layer to the jth unit of the ∂wjk
hidden layer, and wjk is the connecting weight between jth hidden unit to Step 2: Update the connecting weight between input to hidden layer.
the kth output unit as shown in Fig. 5. The delta learning rule for weight
adjusting is given by: Δwjk = α(TOk − OOk )IIi . For the training set vij (updated) = vij (previous) + Δvij (12)
(I, T)with cardinalityP, let us consider the cost function given as in Eq. { }
(4) [22,23]: where Δvij = − η ∂∂vEij and
avg
1∑ P
E= (TOk − OOk )2 (4) {
∂E
}
1∑ P
∂Ek
P k=1 =
∂vij avg P k=1 ∂vij
1∑ P
E= (Ek )2 , where Ek = TOk − OOk ∂Ek ∂Ek ∂OOk ∂OIk ∂HOj ∂HIj
P k=1 = (usingchainruleatkth neuron) (13)
∂vij ∂OOk ∂OIk ∂HOj ∂HIj ∂vij
To minimize the cost function, the incremental mode of training is
performed in two steps: ∂Ek
where = − (TOk − OOk ) (14)
Step 1: Update the connecting weight between the hidden and the ∂OOk
output layer.
∂OOk
=1 (15)
wjk (updated) = wjk (previous) + Δwjk (5) ∂OIk
∂E ∂OIk
where Δwjk = − η (6) = wjk (16)
∂wjk ∂HOj
Evaluate the gradient: ∂HOj
= a1 HOj (1 − HOj ); (activationfunctionislog − sigmoidal) (17)
∂Ek ∂Ek ∂OOk ∂OIk ∂HIj
= (usingchainruleatkth neuron) (7)
∂wjk ∂OOk ∂OIk ∂wjk
∂HIj
= IIj (18)
where ∂vij
4
S.S. Chouhan et al. Measurement 171 (2021) 108796
Using Eqs. (14)–(18), Eq. (13) yield accuracy was evaluated by using the two segmentation evaluation
metrics known as specificity and sensitivity [33–36] given by the
∂ Ek
= − a1 (TOk − OOk )HOj (1 − HOj )wjk IIj (19) following equation
∂vjk
TrueNegative
Specificity = (20)
TrueNegative + FalsePositive
3.3. Feature extraction
TruePositive
Three different algorithms had been used for feature extraction. Sensitivity = (21)
TruePositive + FalseNegative
L*a*b* color model [24] is used for color (using a* channel), Scale-
Invariant Feature Transform (SIFT) [25,26] for shape, and Local Bi where True Positive = no. of pixels exactly classified, False Positive =
nary Pattern (LBP) [27] has been used for texture features extraction. no. of pixels incorrectly classified, True Negative = no. of pixels exactly
misclassified, and False Negative = no. of pixels incorrectly
3.4. Image classification misclassified.
Segmentation results are given by Figs. 6 and 7 for Jatropha Curcas L.
Seven different commonly known machine learning classification (Leaf spot) and Pongamia Pinnata L. (Colletotrichum leaf blight).
algorithms had been used for plant leaf image classification. These al This section presents the various segmentation results for different
gorithms are Logistic Regression (LR) [14], Linear Discriminant Analysis approaches and their comparison with our proposed hybrid ADALINE
(LDA) [14], K-Nearest Neighbours (KNN) [28], Classification and network. Segmentation performance has been validated using Speci
Regression Trees (CART) [29], Random Forest (RF) [14,16], Naïve ficity and Sensitivity evaluation parameters and results are given by
Bayes (NB) [29], and Support Vector Machine (SVM) [17,30–32] Table 1 and Fig. 8 for Jatropha Curcas L. and Table 2 and Fig. 9 for
respectively. Pongamia Pinnata L respectively. The average Specificity and Sensitivity
in case of Jatropha Curcas L. for randomly chosen eight images from the
4. Experimental evaluation and results database has been evaluated to be 0.8333 and 0.8343 for k-means al
gorithm [15], 0.8745 and 0.8753 for Multiple Linear Regression Model
4.1. Segmentation results [36], and 0.9495 and 0.9551 respectively for proposed hybrid ADALINE
network. This shows the effectiveness of the proposed hybrid network.
Segmentation of diseases from the leaf images had been accom Also to further validate the performance of the network the results were
plished using the proposed superpixel clustering-based hybrid neural evaluated on the complete dataset for Jatropha Curcas L. (124 plant
network. A total number of 124 and 162 leaf images from the database leaves images). In this case, also the proposed network with the average
have been selected for this purpose. The experiments were performed Specificity = 0.9534 and Sensitivity = 0.9637 shows the higher per
working on a system with 4 GB RAM, 1 TB HDD, and I3 processor in the formance when compared with that of 0.8419 and 0.8496 for the k-
python language environment. The results for the segmentation means algorithm, 0.8798 and 0.8825 for Multiple Linear Regression
5
S.S. Chouhan et al. Measurement 171 (2021) 108796
Model respectively. Average specificity and sensitivity with 0.9795 and 0.9805, 0.8906 and
Similarly, for Pongamia Pinnata L. plant leaves first the average 0.8934, 0.8712, and 0.8798 were found to be for the proposed hybrid
specificity and sensitivity have been evaluated on randomly chosen ADALINE network, Multiple Linear Regression Model, and k-means al
eight images and then on a complete dataset that consists of about 162 gorithm for the complete database. In both cases, the proposed method
plant leaf images. Average specificity and sensitivity for the proposed proves its supremacy over the other state of the art methods. In both
hybrid ADALINE network were found to be 0.9722 and 0.9749, for cases, it has been observed that segmentation accuracy increases with
Multiple Linear Regression Model is 0.8832 and 0.8856, and for the k- the increase in the sample size. Superpixel clustering and level of
means algorithm is 0.8633 and 0.8709 for eight images respectively. equivalence methods defined for the labeling of pixels among healthy
6
S.S. Chouhan et al. Measurement 171 (2021) 108796
Table 1
Jatropha Curcas L. segmentation results.
Leaf sample k-means algorithm Multiple linear regression model Proposed hybrid ADALINE network
Table 2
Pongamia Pinnata L. segmentation results.
Leaf sample k-means algorithm Multiple linear regression model Proposed hybrid ADALINE network
and diseased improves the segmentation performance of the proposed Jatropha Curcas L. leaf image or Pongamia Pinnata L. leaf image
method. (including disease and healthy images of both the plants), (ii) to classify
among healthy and disease leaf images of Jatropha Curcas L. plant and,
(iii) to classify the leaf images among healthy and diseases leaf images of
4.2. Classification results
Pongamia Pinnata L. plant. Results for the different cases have been
evaluated on all the seven classifiers and the classification accuracy [35]
The classification results have been validated for three cases
has been calculated by using the given equation
including (i) to classify the given image among two plant classes i.e.
7
S.S. Chouhan et al. Measurement 171 (2021) 108796
Truepositive + TrueNegative
Accuracy =
Truepositive + TrueNegative + FalsePositive + FalseNegative
(22)
5. Discussion
8
S.S. Chouhan et al. Measurement 171 (2021) 108796
Acknowledgement
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