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Advances in Anatomy, Embryology and Cell Biology
Cellular and
Molecular Basis
of Mitochondrial
Inheritance
Mitochondrial Disease and Fitness
Advances in Anatomy, Embryology and Cell Biology publishes critical reviews and state-of-
the-art surveys on all aspects of anatomy and of developmental, cellular and molecular
biology, with a special emphasis on biomedical and translational topics.
Prof. Dr. P. SUTOVSKY, S141 Animal Science Research Center, Division of Animal Sciences and Department of
Obstetrics, Gynecology and Women’s Health, University of Missouri, Columbia, MO, USA
e-mail: [email protected]
Series Editors
Prof. Dr. Z. KMIEC, Department of Histology and Immunology, Medical University of Gdansk,
Debinki 1, 80-211 Gdansk, Poland
e-mail: [email protected]
Prof. Dr. H.-W. KORF, Anatomy and Brain Research Center, Department for Anatomy 1, Heinrich Heine University
Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
e-mail: [email protected]
Prof. Dr. M.J. SCHMEISSER, Institute of Microscopic Anatomy and Neurobiology, University Medical Center of the
Johannes Gutenberg University, Langenbeckstr 1, 55131 Mainz, Germany
e-mail: [email protected]
Prof. Dr. B. SINGH, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB T2N 4Z6, Canada
e-mail: [email protected]
Prof. Dr. J.-P. TIMMERMANS, Laboratory of Cell Biology and Histology/Core Facility Biomedical Microscopic
Imaging, Department of Veterinary Sciences, University of Antwerp, Drie Eiken Campus, Universiteitsplein 1,
2610 Wilrijk, Belgium
e-mail: [email protected]
231
Advances in Anatomy,
Embryology
and Cell Biology
Editor-in-Chief
P. Sutovsky
Series Editors
F. Clascá • Z. Kmiec • H.-W. Korf •
M.J. Schmeisser • B. Singh • J.-P. Timmermans
This Springer imprint is published by the registered company Springer Nature Switzerland AG.
The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland
Preface: A Mother’s Gift
Mitochondria, the cellular power station organelles, arose from bacterial endosym-
bionts and, in the course of evolution, became the essential source of the energy
storing substrate ATP in both prokaryotic and eukaryotic cells. Contrary to equal
maternal and paternal contribution of chromosomes in sexually reproducing organ-
isms, most animal taxa show preference for clonal, uniparental, and overwhelmingly
maternal inheritance of mitochondria and mitochondrial DNA (mtDNA). Research
into maternal mitochondrial inheritance, referred to as the “mitochondrial Eve
paradigm,” dates back to a 1940 Nature paper that explained it as a dispersion and
dilution due to disproportionate number of mitochondria in an oocyte, compared to a
spermatozoon (reviewed in Song et al. 2016a; Sutovsky and Song 2017). More
recently, studies in rodents, ungulates, and primates revealed the proactive, seek-
and-destroy mechanisms that target paternal, sperm-borne mitochondria after fertil-
ization (Sutovsky et al. 1996) with the help of the universal protein recycling
machinery, the ubiquitin-proteasome system (UPS) (Sutovsky et al. 1999, 2003).
Finally, mitochondrial membrane ubiquitination has been linked to autophagic
machinery in invertebrate genetic models Drosophila and C. elegans (Al Rawi
et al. 2011, 2012; Politi et al. 2014), eventually revealing that the linkage of
ubiquitination to autophagy also regulates postfertilization sperm mitophagy in
mammals (Song et al. 2016b). Besides advancing our knowledge of the develop-
mental and evolutionary aspects of mitochondrial function, a deeper understanding
of mechanisms promoting clonal mitochondrial inheritance in humans and other
species will help manage human mitochondrial health, fitness, and disease, as well as
improve production traits and reproductive performance in agriculturally important
domestic animals. This volume addresses the diverse yet interwoven aspects of
mitochondrial inheritance and function in animals and humans. Readers will notice
that the table of contents loosely follows the phylogenetic tree, starting with nem-
atodes and ending with humans. However, the topics of individual chapters are
complementary rather than overlapping, addressing the mitophagy mechanism,
mitochondrial genome interactions with environment and nutrition, and the impor-
tance of mitochondrial function for health, fitness, and reproduction.
v
vi Preface: A Mother’s Gift
Following early work on the role of UPS in the degradation of sperm mitochon-
dria at fertilization, the studies in C. elegans (Al Rawi et al. 2011, 2012; Sato and
Sato 2011) elegantly (pun intended) linked UPS, which degrades protein molecules
one at a time, to autophagy, the self-engulfment machinery that recognizes ubiquitin-
tagged protein aggregates and even whole organelles, including mitochondria, for
bulk degradation in the autophagic vacuole. The chapter by Jorge Merlet and
coauthors from the laboratory of Vincent Galy (Merlet et al. 2019) uses this animal
model, advantageous for its relative ease of genome modification and rapid gener-
ational turnover, to decipher the pathways that control the degradation of paternally
contributed sperm organelles. Fertilization of C. elegans oocyte occurs inside the
transparent body, which is advantageous for epifluorescence imaging of molecules
involved in the fertilization process. The mature oocyte passes through the sperma-
theca and an amoeboid spermatozoon cell fuses with the oocyte and delivers, among
the structures entering the embryo, the sperm mitochondria surrounded by the Golgi-
derived, nematode-specific membranous organelles. Subsequently, these sperm-
contributed structures are degraded by autophagy, guided by autophagic marker
proteins LGG-1 and LGG-2, homologues of mammalian autophagy receptors
GABARAP and LC3, respectively. This process may be facilitated by depolarization
and proteasome-dependent disruption of mitochondrial membrane, as well as by
mtDNA-specific endonucleases. The existence of integrated but distinct mechanisms
that converge during sperm mitophagy is proposed, opening up new lines of
investigation using both genetic and proteomic approaches.
One of the most notable exceptions to maternal inheritance rule is the bivalvian
mollusk Mytilus, in which the doubly uniparental inheritance is controlled by
specific genetic and molecular mechanisms guiding postfertilization recognition of
paternal mitochondria, reviewed in the second chapter by Eleftherios Zourous and
George C. Rodakis (Zouros and Rodakis 2019). A Mytilus egg comes either with or
without the “masculinizing” factor and the “sperm mitochondria binding” factor, a
property of the female that is determined by two corresponding nuclear genes that
are always in the on/on or the off/off phase. A fertilized egg without these factors
develops into a female and inherits sperm mitochondria while still having predom-
inantly maternal mtDNA. The egg endowed with said factors develops into a male,
and the sperm mitochondria become segregated into one embryonic blastomere
destined to give rise to sperm progenitor germ cells. In this case, paternal mitochon-
dria in the male embryo escape elimination from the germ line, resulting in sperma-
tozoa free of maternal mtDNA, while the soma of the embryo still inherits
predominantly maternal oocyte mitochondria. This complex, intriguing inheritance
pattern, further complicated by the possibility of mtDNA recombination in mussels,
thus flips the insect, nematode, and mammalian models of mitophagy by eliminating
maternal mtDNA from male germ cells during embryo development instead of
eliminating paternal mitochondria from fertilized egg after fertilization. Further
studies of this model will help answer question about the (co)evolution of genes
responsible for sexual reproduction, sex determination, nuclear–mtDNA interac-
tions, and allocation of reproductive efforts between sexes.
Preface: A Mother’s Gift vii
Continuing with the biparental inheritance theme is a chapter from the research
team of William Ballard rooted in research on genetic model Drosophila, in which
paternal mtDNA inheritance is observed much more frequently than in mammals
and under natural conditions rather than by interspecific cross-hybridization or
assisted reproduction (Wolff et al. 2012). Similar to other animal models, UPS and
autophagy contribute to the elimination of paternal mitochondrial genome in Dro-
sophila, when it does occur (Politi et al. 2014). Parent-specific mitochondrial
inheritance variations in the fruit fly family can have a bearing on their metabolism,
fitness, reproduction, and even speciation and evolution. In the third chapter, Wen
C. Aw and coauthors (Aw et al. 2019) review the metabolic aspects of mitochondrial
function and homeostasis and the influence of mtDNA mutation on nuclear–mito-
chondrial cross talk not only in Drosophila but also in a wide range of vertebrate
species, including humans. Also discussed is the balance between mitochondrial
ATP and reactive oxygen species (ROS) production and the sex-biased trade-off
between metabolic efficiency and the cost of gamete production. Authors conclude
that exogenous factors, such as diet, may differentially influence the selective costs
of mtDNA mutations. Further studies of the factors influencing mitochondrial
homeostasis are likely to give valuable insight into evolutionary biology and quan-
titative genetics as well as nutrigenomics and pharmacogenomics.
A gift can sometimes become a curse, quite literally. In the case of mitochondria,
the term mother’s curse has been coined to refer to maternal inheritance of mito-
chondria with suboptimal mitochondrial genomes. Besides human health, the integ-
rity and functionality of mitochondrial genome has a significant bearing on
production traits, fitness, and fertility in economically important livestock species,
affecting both economic and sociological aspects of agriculture worldwide.
Uniquely, large mammals can now be propagated by somatic cell nuclear transfer
(SCNT/cloning) for the purpose of preservation of rare/endangered species and rare
breeds, production of transgenic model animals for biomedical research, and mainly
to accelerate the dissemination of economically desirable livestock genomes with
superior production traits and produce disease-resistant animal strains (Wells and
Prather 2017). In the absence of sperm-specific mitophagy determinants, donor cell
mitochondria and mtDNA are invisible to mitophagic machinery present in the
oocyte cytoplasm, resulting in cloned embryos with heteroplasmy due to the pres-
ence of both donor cell and recipient ooplast mitochondrial genomes. In their
chapter, Kanokwan Srirattana and Justin St. John address mitochondrial genome
inheritance patterns and mitochondrial dysfunction associated with SCNT, focusing
on how they impact the reproductive performance in agriculturally important live-
stock species (Srirattana and St John 2019). Also discussed are the benefits of donor
cell mtDNA depletion and mtDNA supplementation to cloned mammalian embryos,
aimed at enhancing the efficiency of in vitro embryo production. Apart from
technological benefits, the incorporation of mtDNA supplementation into SCNT
protocols offers an intriguing model system for studying mitochondrial inheritance
and mtDNA–nuclear interactions.
viii Preface: A Mother’s Gift
Altogether, the first four chapters solidify the view that sperm mitophagy pathway
is well conserved across vertebrate and invertebrate taxa, sharing common molecular
components while also displaying unique features and variations on the mitophagy
theme (such as the doubly uniparental inheritance in Mytilus) that differentiate it
from autophagy observed in somatic cells. Providing a fitting punctum and an
exclamation mark to this monograph, the closing chapter by Peter Kramer and
Paola Bressan puts mitochondrial health and inheritance in the general context of
human fitness, lifestyle, and reproductive health (Kramer and Bressan 2019). Filled
with thought-provoking ideas and commentaries, this chapter highlights the influ-
ences of mitochondrial health and inheritance on animal fitness and human well-
being. It is intriguing how the mitochondria-produced ROS delicately balance
homeostasis with cellular damage, how prolonged life span may come at the expense
of reproduction (and vice versa), and how mitochondria control immune response,
food intake, and circadian clocks. In authors’ own words, the tiny but mighty
mitochondria are so important that an average human carries 14,000 square meters
of inner mitochondrial membranes, able to generate membrane potential on a par
with the electric field of a lightning bolt. Such a realization sets the stage for
discussing the influence of mitochondrial health and integrity on growth, aging,
reproduction, health and disease, exercise, sleep, diet, and food restriction. The
authors also point out that the ever-so-popular, mitochondria-targeting nutritional
supplements and antioxidants are in fact a double-edged sword. Space is given to the
discussion of mitochondrial involvement in the reproductive process and strategy, as
well as to energy cost of procreation, and to the discussion of assisted reproductive
therapies aimed at enabling conception with less than perfect spermatozoa and eggs
rejuvenated by mitochondrial replacement therapy. Among many lessons learned,
the one close to all of us is that we can live longer, healthier lives simply by offering
only the necessary amount of particular substrates (such as glucose) to our own
mitochondria, by limiting our food intake and our natural urge to store energy in fat
cells. Helpfully, some of the past and current diet fads are discussed in this context.
In a captivating and approachable way, the closing chapter provides a compelling
manifesto for the importance of mitochondrial research for our health, well-being,
and prosperity.
In closing, I would like to thank all contributors and their teams, my fellow
mitochondriacs, for tackling the task of compiling their research with great enthu-
siasm and wit. As an editor, I am very grateful for their insightful contributions and,
with their busy schedules, their willingness to sacrifice their time and
mitochondrion-produced energy to write chapters for this volume. Lastly, I would
like to dedicate this monograph to the memory of my mom, Anna, whom I lost not
long ago and who gave me the best gifts only mothers can give: life, unconditional
love, and healthy mitochondria.
References
xi
Autophagosomal Sperm Organelle
Clearance and mtDNA Inheritance
in C. elegans
Contents
1 C. elegans mtDNA Inheritance and Fertilization . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
1.1 C. elegans to Study Maternal Transmission of mtDNA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
1.2 Sperm Components Entering Embryo at Fertilization . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
2 Sperm Organelles Clearance . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.1 Autophagy Degradation of MOs and Sperm Mitochondria . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2.2 Specific Mechanism of Sperm Mitochondria Degradation . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
2.3 Impact of Oocyte-Derived Mitochondria Dynamics on Sperm Organelles Clearance . . 18
3 Sperm Mitochondria Degradation to Prevent Heteroplasmy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
3.1 Possible Consequences of Heteroplasmy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
3.2 Probably More than One Mechanism to Prevent mtDNA Transmission . . . . . . . . . . . . . 20
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Fig. 1 C. elegans to study the fate of sperm components after fertilization. Schematic representa-
tion of one of the two gonad arms of a C. elegans hermaphrodite adult. The U-shape syncytial gonad
produces cellularized oocytes arrested in prophase of the first meiotic division. These oocytes
receive maternal mitochondria (green). The most proximal mature oocyte resumes meiosis and is
pushed through the spermatheca for fertilization and toward the uterus where it starts embryonic
development. Upon fertilization and gametes fusion, MOs (blue), sperm mitochondria (red) and
sperm nuclear DNA (violet) enter the oocyte and define the posterior pole of the embryo. Upon
meiosis I and II completion, the eggshell is formed, and the sperm-derived organelles are dispersed
within the cellular volume and randomly segregated between the two blastomers. By the 100-cell
stage (200 min), sperm organelles are degraded
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 3
(Al Rawi et al. 2011; Sato and Sato 2011) along with their mtDNA (Zhou et al. 2011,
2016). Despite the 600- to 800-fold dilution of sperm mtDNA compared to the
maternal mtDNA, dilution is not the only mechanism insuring uniparental maternal
transmission of mtDNA (Sect. 2).
The isolation of a mtDNA mutant strain was instrumental to track sperm mtDNA
in the progeny. The most frequently used strain contains the UaDf5 mtDNA allele
which carries a 3 kb deletion affecting 4 proteins-encoding genes and 11 tRNA-
coding genes. Interestingly, this shorter molecule is maintained at a high copy
number in the worms together with wild-type (WT) mtDNA molecules which
complement the not fully functional UaDf5 allele. Therefore, animals carrying
UaDf5 allele are heteroplasmic, with the UaDf5 representing 60% of the total
number of mtDNA molecules which is twice of the total mtDNA molecules in WT
worms (Tsang and Lemire 2002b). Because of its huge size, the UaDf5 deletion can
be easily tracked by PCR. Historically, this allele was used to demonstrate that
mtDNA is maternally transmitted in worms, and then it rapidly became a tool of
choice to study the mechanisms of sperm mtDNA clearance (Al Rawi et al. 2011;
Djeddi et al. 2015; Sato and Sato 2011; Sato et al. 2018; Zhou et al. 2011, 2016).
When heteroplasmic males carrying the UaDf5 allele are crossed with WT hermaph-
rodites, the progeny only contains the WT mtDNA after the 64-cell stage (Zhou et al.
2011). This sperm mtDNA clearance in the embryo to insure strictly maternal
inheritance of mtDNA is correlated with the degradation of labeled sperm-derived
mitochondria (Al Rawi et al. 2011; Sato and Sato 2011; Zhou et al. 2011; Sect. 2).
C. elegans is an androdioecious (male-hermaphrodite) specie with self-fertilizing
hermaphrodites. Neither in self-fertilization nor in cross fertilization, the sperm-
derived mtDNA are kept in the progeny, and no differences in the timing and
mechanism of sperm mitochondria degradation were detected despite their different
origins. In other words, the degradation of the sperm mitochondria and the nematode-
specific Golgi-derived membranous organelles (MOs) occurred also when sperm
mitochondria had the same origin than the oocyte mitochondria. This characteristic
strongly suggests that the mechanisms responsible for sperm mitochondria degradation
recognize sperm property/ies rather than their exogenous origin.
The potential reason for uniparental maternal heredity could be the need to avoid
the transmission of mutated forms of the mtDNA generated during the life of the
motile spermatozoon. The coexistence of different forms of mtDNA molecules,
a.k.a. heteroplasmy, is thought to be deleterious and unstable in the organism
(Sharpley et al. 2012). Even though, the degree of mitochondrial heteroplasmy in
natural worm populations and within single individuals has not been documented,
studies of the heteroplasmic worms carrying the UaDf5 mtDNA allele revealed
defects (Liau et al. 2007; Sato et al. 2018). This heteroplasmic strain is viable,
shows reduced egg-laying and defecation rates, a shorter life-span, as well as a
reduced motility of sperm cells (Liau et al. 2007). Furthermore, the duration of cell
division is extended, and the embryonic lethality is higher in these heteroplasmic
worms with 9.4% of lethality against 0.4% for homoplasmic wild-type worms (Zhou
et al. 2016). However, it is worth noting that this heteroplasmy may represent a very
peculiar case since it is stable over generations (Tsang and Lemire 2002b), while
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 5
heteroplasmy in mice has been described as very unstable with the rapid switch to a
homoplasmic status (Sharpley et al. 2012). This stability in the worms carrying the
UaDf5 mtDNA is probably the result of antagonist selection mechanisms. The
smaller mtDNA has a replicative advantage, while the WT mtDNA remains required
for cell/organism viability (Tsang and Lemire 2002b). Interestingly, milder embry-
onic phenotypes (embryonic lethality, cell division duration) were also observed for
embryos showing heteroplasmy due to the transient stabilization of sperm mtDNA
from a different wild-type isolate (Hawaïn crossed with the Bristol isolate) (Zhou
et al. 2016). This experiment demonstrates that transient heteroplasmy induced by a
delayed degradation of sperm mitochondria is deleterious for the embryo. Testing
the impact of heteroplasmy over several generations has not been possible so far
since sperm mitochondria are still degraded later during development, and some of
the mutations or RNAi delaying their degradation, like autophagy inactivation, are
lethal by themselves (Al Rawi et al. 2011; Sato and Sato 2011).
C. elegans spermatozoa are amoeboid cells of around 5 μm. The spermatozoa are
formed at the end of the fourth larval stage in hermaphrodites or in males. Four
spermatids form the budding of one secondary spermatocyte. During the budding,
several cellular components present in the spermatocytes like actin, tubulin, and the
ribosomes are excluded from the forming spermatids and retained in the residual
body (for review, see Nishimura and L’hernault 2017). The nuclear DNA, the MOs,
and the mitochondria are segregated in the four spermatocytes and remain visible in
the mature spermatozoon (Fig. 2). The mature spermatozoa correspond to the
spermatids activated into mobile spermatozoa at the time of the first ovulation or
upon ejaculation of the male with TRY-5 protease in the seminal fluids (Smith and
Stanfield 2011).
In hermaphrodite worms, 99% of the spermatozoa are used to fertilize an oocyte
(Ward and Carrel 1979). When males and hermaphrodites are mated, the spermato-
zoa from the male displace the ones from the hermaphrodite (Ward and Carrel 1979).
At each fertilization, some of the spermatozoa are pushed out of the spermatheca
toward the uterus (Ward and Carrel 1979) and have then to crawl back toward the
spermatheca to get ready for the next fertilization event (Ward and Carrel 1979). The
motility relies on the polymerization activity of the proteins of the family of the
major sperm proteins (MSP) representing up to 40% of the total protein composition
of mature sperm cells (Italiano et al. 1996). MSP assembly into fibers depends on
ATP, and therefore sperm motility requires mitochondria activity for ATP supply.
This production of ATP might generate ROS and represent a threat for sperm
mtDNA integrity. At fertilization, the plasma membrane of the spermatozoon fuses
with the plasma membrane of the oocyte, and its content enters the cytoplasm. This
includes, at least, the MSP proteins, the centrioles, the genomic DNA, the sperm
mitochondria with their mtDNA molecules, and the nematode-specific MOs.
6 J. Merlet et al.
MSP proteins, sperm mitochondria, and MOs disappear soon after fertilization,
while sperm genomic DNA and the centrioles are critical for embryogenesis. In
this chapter, we will focus only in the organelles that are present in the mature
spermatozoa and degraded after their entry.
origin in the embryo show sections of elongated shapes. The average diameter of the
wild-type sperm mitochondria is around 460 nm which makes them distinguishable
from the maternal ones which are more tubular with an average diameter of around
240 nm (Zhou et al. 2016).
The observation of the mitochondria morphology by light microscopy shows
clear differences between oocyte and sperm-derived mitochondria within the 1-cell
stage embryo completing meiosis division (Al Rawi et al. 2011; Sato and Sato 2011;
Fig. 3). The few sperm mitochondria are localized around the condensed sperm
chromatin at the posterior side of the embryo (Fig. 3), and they appear more
fragmented than the elongated and interconnected maternal mitochondria (Fig. 4).
The sperm mitochondria show the presence of clear cristae by TEM and are labeled
by fluorescent dyes accumulating into mitochondria with a membrane potential
arguing for intact, functional, and polarized sperm mitochondria prior fertilization
(Al Rawi et al. 2011; Sato and Sato 2011).
One remarkable property of the process in C. elegans compared to other species is its
speed. Sperm mitochondria and MOs are rapidly degraded in the embryo before the
64-cell stage in less than 3 h of development (Al Rawi et al. 2011; Sato and Sato
2011). By comparison sperm mitochondria are degraded by 84 h in the mouse
embryo (Luo et al. 2013; Rojansky et al. 2016). In Drosophila, the sperm mtDNA
is eliminated prior to fertilization, and the mitochondria are degraded in the embryo
within few hours (Politi et al. 2014).
The LGG-1 and LGG-2 autophagy proteins (C. elegans homologs of LC3/Atg8
proteins) are recruited around MOs and sperm mitochondria at the end of the first
female meiosis division (15–20 min post fertilization) (Al Rawi et al. 2011; Sato and
Sato 2011; Fig. 5). LGG-1 is required for autophagosome formation and LGG-2
recruitment, while LGG-2 is dispensable. Interestingly, these respective contribu-
tions in the formation of autophagosomes are correlated with the impact of their
depletion on embryo development. LGG-1 is essential, while worms lacking LGG-2
are viable (Djeddi et al. 2015; Manil-Segalen et al. 2014). This suggests that their
respective function in sperm-inherited organelle degradation is characteristic of their
function in other autophagic processes during development.
In the 1-cell stage embryo, the localization of the autophagy markers is restricted
to the area around sperm-inherited organelles. LGG-1 is localized in few cytoplas-
mic foci in the oocytes (Al Rawi et al. 2011; Sato and Sato 2011). After fertilization
LGG-1 and LGG-2 are essentially localized around sperm organelles at the posterior
pole of 1-cell embryos ongoing first and second meiotic divisions (Al Rawi et al.
8 J. Merlet et al.
Fig. 3 MOs and sperm mitochondria are found in the cytoplasm, at the posterior pole of the 1-cell
stage C. elegans embryo shortly after fertilization. (a) MOs and the sperm mitochondria were
observed in spermatozoa outside the embryo and inside a 1-cell stage embryo by confocal
microscopy. MOs were visualized using the SP56 antibody (green) on a fixed sample, sperm
mitochondria were labeled using CMXRos (red), and nuclear DNA was labeled with Hoechst
(blue). At the end of the second meiotic division (around 30 min after fertilization), MOs and sperm
mitochondria are still grouped around the sperm nuclear DNA, at the posterior pole of the 1-cell
embryo, ready to be targeted by the autophagy machinery. The dotted line indicates the border of
the embryo; sperm- (♂) and oocyte-derived (♀) nuclear DNA are indicated. (b and c) Transmission
electron micrograph of spermatozoid organelles around sperm nuclear chromatin (asterisk) in a
1-cell embryo at metapase of the first meiosis division, revealing the presence of (c) sperm-derived
mitochondria (♂mito) with granules in their matrix and (b) membranous organelles (MO). Scale
bars are 2.5 μm in (a) and 500 nm in (b and c)
Fig. 4 Following fertilization, C. elegans sperm mitochondria are outnumbered by the oocyte-
derived mitochondria and show a distinct morphology. Oocyte-derived mitochondria labeled with
GFP::ANT-1 protein (green) and sperm-derived mitochondria labeled with CMXRos mitotracker
(red) were visualized in a fixed 1-cell stage embryo by fluorescent microscopy. DNA was labeled
with Hoechst (blue). Scale bar represents 5 μm
Fig. 5 Autophagy markers are recruited around sperm mitochondria at the posterior pole of
C. elegans 1-cell stage embryo. LGG-1 (a) and LGG-2 (b) labeled using specific antibodies
(green) in a fixed 1-cell stage embryo were visualized by fluorescent microscopy. Sperm-derived
mitochondria were labeled with CMXRos mitotracker (red), and DNA was labeled with Hoechst
(blue). Scale bar represents 5 μm
the posterior position of the substrates (Al Rawi et al. 2011). The same double
induction of autophagy was also observed in polyspermic embryos obtained in the
spe-11(hc77ts) embryos (Sato and Sato 2011), a protein not required for fertilization
but for embryo development. The induction of this early autophagy is also indepen-
dent of cell cycle progression since, in arrested embryos at metaphase of meiosis I
upon emb-27(RNAi) treatment, GFP::LGG-1 was still recruited around the sperm
organelles (Sato and Sato 2011).
Electron tomographs revealed the modification of sperm mitochondria shortly
after their entry in the embryos. The cristae gradually lose their structure, and
electron-dense granules appear in the matrix (Zhou et al. 2016; Fig. 3). These
types of granules were observed previously (Fawcett 1981) and their origin and
potential function discussed (Jacob et al. 1994). They are probably composed of
phospholipids and able to bind calcium, but their biological functions are still
unknown. These aggregates are growing in size, while the cristae are cleared prior
12 J. Merlet et al.
to autophagosome enclosure. This made the authors suggest and test the hypothesis
that the paternal elimination begins as a self-destruction process. A dramatic change
in morphology and ions exchanges in sperm mitochondria at the time of fertilization
has been described in acidians (Lambert and Epel 1979). In these marine species
when sperm attach to the chorion, it triggers the swelling of the mitochondrion and
its physical exclusion from the spermatozoon along the flagellum. This swelling is
coupled with the loss of protons from the mitochondria and sperm cell. This reaction
can be triggered by increasing the pH or lowering the Na+ of the sea water. One
could speculate that the same type of reaction is triggered on C. elegans sperm
mitochondria upon their entry.
The autophagy of the sperm-inherited organelles is spontaneous and physiolog-
ical, making it an attractive model to study macro-autophagy. It has been used to
decipher the specific functions of LGG-1 and LGG-2 in the allophagosome forma-
tion and maturation. LGG-1 and LGG-2 are both localized around sperm organelles
but do not completely overlap (Djeddi et al. 2015). lgg-2 RNAi depletion reduced
the viability of the dauer (a stage of developmental arrest) worms and the lifetime of
the adults (Alberti et al. 2010). lgg-2 RNAi treatment was lethal in mutant carrying a
loss-of-function mutation in daf-2, the C. elegans insulin-like tyrosine kinase recep-
tor, which triggers abnormal constitutive dauer entry (Melendez et al. 2003). LGG-2
function in autophagy was further supported since lgg-2 RNAi depleted embryos
abnormally accumulate P-granules components in the somatic cells (Zhang et al.
2009). The characterization of the lgg-2(tm5755) / embryos suggested that
LGG-2 is required for allophagosomes acidification, a function that would be
mediated by an interaction with VPS-39 (Manil-Segalen et al. 2014), one component
of the HOPS complex, a multimeric tethering protein complex involved in vesicle
fusion of late endosomes. In the absence of LGG-2 protein, LGG-1 was still
recruited around the substrates that appeared clustered in the early embryos (Djeddi
et al. 2015; Manil-Segalen et al. 2014). This clustering phenotype of the
allophagosomes was proposed to be the consequence of a defect in allophagosomes
acidification due to the lack of fusion with the lysosomes as a result of the loss of
interaction with VPS-39 (Manil-Segalen et al. 2014). The potential link with the
endosomal pathway was intriguing and could be conserved among species as
suggested by the localization of the VPS-27 in potential hybrid compartments
between endosomes and autophagosomes (amphisomes) around sperm-inherited
organelles in the 1-cell stage C. elegans embryos (Manil-Segalen et al. 2014) as
well as the colocalization of Rab7 with sperm mitochondria in Drosophila embryos
(Politi et al. 2014).
Live embryo imaging of labeled sperm mitochondria and GFP::LGG-1 allowed
to describe the dynamics and distribution of the allophagosomes during the first hour
of C. elegans development. The allophagomes are formed around the clustered
sperm organelles near the condensed sperm nuclear DNA at the posterior pole of
the embryo. The substrates and the autophagosomes tend to migrate toward the
anterior pole of the embryos at the time of pronuclei formation. After pronuclei
meeting and during pronuclei centration, the autophagosomes tend to be gathered by
the active centrosomes. During the first mitosis, they are randomly distributed
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 13
between the two daughter blastomers (Djeddi et al. 2015; Hajjar et al. 2014). In the
absence of LGG-2, the dynamics of the allophagosomes was dramatically impaired.
LGG-1-labeled autophagosomes remained clustered close to the 1-cell stage plasma
membrane, and their dispersion between P1 and AB blastomers was abnormal
(Djeddi et al. 2015). This defect in the intracellular dynamics was correlated with
a delay in the degradation of the sperm-derived MOs and mitochondria (Djeddi et al.
2015). This extended clustering phenotype is also coupled to a block in the retro-
grade movement of the autophagosomes toward the pericentrosomal area where the
acidic compartment tends to accumulate. This suggests that the delay in sperm-
derived organelles clearance could be due to a delay in the fusion of autophagosomes
with acidic compartments (Djeddi et al. 2015).
ALLO-1/IKKE-1
Fig. 7 The mechanisms involved in sperm organelles autophagy degradation. After the fusion of
the spermatozoon and the oocyte, the sperm mitochondria and the MOs are targeted by the
autophagy machinery with the recruitment of the membrane-associated LGG-1 protein. Several
structural modifications and mechanisms were recently described, but more work is required to
evaluate their respective contribution and relationship. In all pathways, sperm mitochondria lose
their membrane potential (not represented) and accumulate in their matrix electron-dense granules
(black dots) of unknown origin and function. (Left) The sperm provided endonuclease G (CSP-6,
blue) is relocalized in the matrix after fertilization to degrade mtDNA (red circles). This contributes
to sperm mtDNA clearance and sperm mitochondria cristae destabilization before autophagosome
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 15
⁄
Interestingly, in C. elegans, like many animal species, the 35–50 copies of sperm
mtDNA (Al Rawi et al. 2011) are largely outnumbered in the embryo containing
around 2.4 104 copies of maternal mtDNA (Tsang and Lemire 2002a). Despite the
strong dilution of sperm mtDNA molecules, an active mechanism is required to
degrade them in the embryo.
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 17
The mtDNA clearance in other animal species has been described before and after
fertilization (Nishimura et al. 2006). In the fruit fly, it requires the activity of endoG,
an endonuclease protein contributing to the degradation of mtDNA during sperma-
tozoid individualization (Politi et al. 2014). This is coupled to a mechanical exclu-
sion of mtDNA nucleoids during the individualization of the flagella. In endoG
mutant flies, the mtDNA is stabilized.
In C. elegans, an RNAi screen against predicted mitochondrial proteins encoded
by the nuclear genome coupled to a PCR-based assay to detect mtDNA stabilization
revealed CSP-6, a mitochondrial endonuclease G, as a protein required for normal
timing of sperm mtDNA clearance in the embryos (Fig. 7). These results were
confirmed in a mutant expressing a CSP-6 with a deletion of its catalytic domain
(Zhou et al. 2016). In embryos lacking a functional CSP-6 protein, a trackable form
of sperm mitochondrial genome was found beyond the 64-cell stage up to the
fourfold stage of embryo development (around 11 h of development). The observa-
tion of embryos from CSP-6-depleted hermaphrodite crossed with WT males with
mitotracker-labeled mitochondria revealed that sperm mitochondria remain visible
up to the coma stage (around 7 h of development). The apparent shift in stability
between the sperm mtDNA and the labeled sperm mitochondria may be caused by
several experimental differences with the PCR assay being a more sensitive technic
to reveal residual sperm mitochondria material. The delay in sperm mtDNA and
mitochondria degradation upon CPS-6 loss was associated with a slight delay in the
autophagosomes enclosure around sperm mitochondria from the 4- to the 16-cell
stages (Zhou et al. 2016).
A sperm factor that could serve as a mark for sperm mitochondria targeting has been
proposed (Fig. 7). The worm homologue of vertebrate prohibitin 2 (PHB2) mito-
chondrial protein is required for normal sperm mitochondria degradation (Wei et al.
2017). RNAi depletion of PHB 2 in adult males prior to their crosses delays sperm
mitochondria degradation in the embryos. Sperm mtDNA was also stabilized in the
F1 progeny from the cross involving phb-2 RNAi-treated males (Wei et al. 2017).
Interestingly, a proteasome-dependent rupture of the outer mitochondrial membrane
is required for the mitophagy in HeLa cells and the interaction of LC3 with PHB2.
Surprisingly, while PARKIN and MUL1 were shown to be required for sperm-
derived mitochondria mitophagy in mouse embryos (Rojansky et al. 2016), inacti-
vation of the Pink/Parkin pathway in C. elegans did not prevent sperm mitochondria
degradation. Indeed, paternal mitochondria labeled with HSP-6::GFP and MOs were
still degraded in the sqst-1 (p62 homologue), pink-1, and pdr-1 (Parkin homologue)
deletion mutants (Sato et al. 2018). This result indicates that the mechanism of
degradation of sperm-inherited mitochondria is different from the classical
mitophagy pathway targeting defective mitochondria. This is surprising since
PHB2 is required for Parkin-mediated mitophagy in murine embryonic fibroblasts.
More work is required to understand how phb-2(RNAi) depletion in sperm cells
stabilizes the sperm mitochondria in the C. elegans embryo.
18 J. Merlet et al.
It has been suggested that mitochondria dynamics, this means a proper balance of
fusion and fission of both maternal and paternal mitochondria, has an important
effect in sperm organelles clearance after fertilization. Mitochondria continually
change shape through the combined actions of fusion and fission (van der Bliek
et al. 2013). In the case of mitochondrial fusion, tubular and elongated organelles are
generated, while fission process generates fragmented ones. C. elegans fzo-1 and
drp-1 genes encode GTPases of the dynamin family that are orthologues of the
MFN1/FZO1 protein (Eura et al. 2003; Rolland et al. 2009), and the DRP1 protein
(Labrousse et al. 1999), which are required for fusion and fission of mitochondria,
respectively (Zamponi et al. 2018).
Loss-of-function mutations in these genes, drp-1(tm1108) which causes severe
mitochondrial fission defects and fzo-1(tm1133) which affects normal fusion dynam-
ics of mitochondria, allowed the study of mitochondrial network and morphology in
C. elegans embryos and sperm (Wang et al. 2016). Using TMRE to specifically label
mitochondria and electron microscopy analysis, Wang et al. showed that mitochon-
dria in WT embryos display different elongated shapes and sizes and are broadly
distributed in the cytoplasm. As anticipated, in mutants affecting mitochondrial
dynamics, maternal mitochondria show radically different morphology and distri-
bution. In drp-1(tm1108) embryos, asymmetric concentrated clusters of long and
highly connected mitochondria are observed, while in fzo-1(tm1133) embryos mito-
chondria are mostly fragmented. Interestingly, in the fzo-1(tm1133); dpr-1(tm1108)
double mutant, fusion defects caused by fzo-1(tm1133) is completely suppressed by
the mitochondrial fission defect caused by drp-1(tm1108) leading to the formation of
long and highly connected mitochondrial. Moreover, each mutation delayed the
clearance of sperm mitochondria labeled with Mitotracker Red (MTR) in cross-
fertilized embryos from WT males with drp-1(tm1108) as well as WT males with
fzo-1(tm1133) hermaphrodites. This demonstrates that mitochondrial dynamics
equilibrium in the embryo is important for paternal mitochondria elimination in
C. elegans.
The impact of the mutations affecting mitochondrial dynamics was also tested on
sperm mitochondria. While EM analysis of WT worms revealed mostly spherical
mitochondria with a diameter of 0.5 μm, they appear larger in fzo-1(tm1133) mutant
and larger but elongated in drp-1(tm1108) mutant spermatozoa. The authors observed
that the paternal fission defect in drp-1(tm1108) males led to the stabilization of the
sperm mitochondria up to the 500-cell stage, while sperm mitochondria from the fzo-1
(tm1133) males were destabilized with a total removal of these organelles at the 32-cell
stage. In cross-fertilized embryos of fzo-1(tm1133) and drp-1(tm1108) worms, these
opposite effects neutralize each other, and mitochondria are eliminated at a normal rate
and are cleared in the 64-cell stage just as in the control.
The stabilization of sperm mitochondria in embryos coming from WT
MTR-stained males and fzo-1(tm1133) hermaphrodites was consistent with the
Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 19
The strain containing the steady-state heteroplasmy with the UaDf5- truncated allele
of the mtDNA was instrumental, once again, to evaluate the consequences of
heteroplasmy brought by the spermatozoon upon fertilization (Tsang and Lemire
2002b). As mentioned in Sect. 1.1, this viable heteroplasmic strain shows reduced
egg-laying and defecation rates, a shorter life-span, as well as a reduced motility of
sperm cells (Liau et al. 2007). It also displays a higher embryonic lethality than
homoplasmic wild-type worms (Zhou et al. 2016). In previous experiments, the
stabilization of sperm mitochondria was achieved by bulk autophagy inactivation
(Al Rawi et al. 2011; Sato and Sato 2011; Zhou et al. 2011) and lysosomal defects
(Zhou et al. 2011), two cellular functions essential for worm development that are
involved in many aspects of embryonic development (Palmisano and Melendez
2018). Furthermore, none of them is specifically interfering with the sole degrada-
tion of sperm mitochondria since they also delay the clearance of the MOs (Al Rawi
et al. 2011; Sato and Sato 2011). It was therefore difficult to evaluate the impact on
the progeny of the stabilized sperm mitochondria.
Interestingly, the delay in sperm mtDNA clearance has been, for the first time,
associated with a detectable phenotype in the heteroplasmic embryos. A first cross
experiment was done using heteroplasmic males containing sperm mitochondria
with both the UaDf5 and WT haplotypes (Zhou et al. 2016). Crossing these
heteroplasmic males with CPS-6-deficient hermaphrodites produced a progeny
with a higher level of embryonic lethality compared to the crosses using
homoplasmic WT males (5.9 vs 0.7% embryonic lethality). The cell division timing
of embryonic blastomers was doubled in crosses with the heteroplasmic males
compared to the crosses using homoplasmic WT males. Significant but milder
defects were also observed for the progeny of crosses between two C. elegans
haplotypes from WT isolates when the males carrying the N2 haplotype were
defective for CPS-6 activity (Zhou et al. 2016). This is the first indication that
20 J. Merlet et al.
the genetic background stabilizing the sperm organelles led to the transmission and
accumulation of MO markers over time. For instance, ALLO-1 mutant is viable and
would accumulate MOs over generation if they were stabilized and randomly
segregated within the developing embryo including in the precursor germ cells.
No such accumulation has been observed using an MO-specific antibody.
It is time to address the question of the mechanisms insuring sperm organelle
clearance in a more integrated manner. Several mechanisms are important for normal
sperm organelle degradation, but we still do not have a clear overview of how they
integrate and what is the relative importance of these pathways in the normal
C. elegans embryo. We now have more indications on how the embryo reacts to
sperm organelles entry, but the signal(s) that allows their specific targeting remain
elusive. C. elegans represents an appealing model to conduct unbiased genetic
screens to identify mutants transmitting their sperm mtDNA and such possible
sperm signal. Genetic screens should be conducted in (1) mutated maternal genetic
backgrounds with a delay in sperm organelle degradation phenotype in order to
identify the potential additional mechanisms besides autophagy and (2) on the
paternal side in order to identify the sperm-specific signal for the degradation. The
genetic approach could in principle reveal not only proteins but also posttranslational
modifications or other types of signals like noncoding RNAs. Modern quantitative
and comparative proteomic approaches of sperm and oocytes mitochondria compo-
sition could also reveal a specific factor involved in sperm mitochondria recognition.
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Autophagosomal Sperm Organelle Clearance and mtDNA Inheritance in C. elegans 23
Contents
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26
2 Observations and Models . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27
2.1 The F and M Content of Somatic and Germ Cell Lines of Mytilus . . . . . . . . . . . . . . . . . . . 27
2.2 The Domination of the Male Germ Line by the M mtDNA Genome . . . . . . . . . . . . . . . . . 30
2.3 The Exclusion of the Maternal mtDNA from the Sperm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 31
2.4 Maleness and Presence of Sperm-Transmitted mtDNA: An Associative But Not
Causative Relationship . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34
2.5 “Masculinization” or Reversal of the Transmission Route of the F Genome . . . . . . . . . 35
2.6 F/M Phylogeny and the Question of DUI Origin . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 36
2.7 Why Is the M Genome Necessary for Male Fertility? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 40
2.8 The One-factor Model for DUI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 42
3 Some Outstanding Questions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 44
4 Concluding Remarks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 46
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 46
E. Zouros (*)
Department of Biology, University of Crete, Heraklion, Greece
e-mail: [email protected]; [email protected]
G. C. Rodakis
Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
1 Introduction
was written (Zouros 2000; Breton et al. 2007; Passamonti and Ghiselli 2009; Zouros
2013). Here we give an account of the present status of our understanding of DUI,
paying special attention to results that appeared after the aforementioned reviews.
Most of these results refer to Mytilus edulis – galloprovincialis, a pair of species that
have different yet overlapping geographical distributions, hybridize readily and have
very similar F and M genomes. The reader who wants to get a full account of
observational and experimental data about DUI should, at the minimum, consult the
review of Zouros (2013) and the papers on Mytilus that appeared after this review –
and are cited here. We use the occasion of this review to synthesize whatever we
currently know into a comprehensive model. The strength of empirical evidence
supporting the various elements of the model varies considerably and the likelihood
that some parts of the model, or even the entire model, could be proved wrong
remains high. But it appears to us that this is the best working hypothesis we may
present at this moment.
A key observation that came from mussel pair matings and also from broods of
single females collected from the wild (Kenchington et al. 2002) was that there are
three types of females with regard to the sex ratio of their progeny: females that
produce almost exclusively daughters (daughter biased females), females that pro-
duce sons in high percentages (son-biased females), and females that could not be
assigned statistically to one or the other of the two previous classes (females with
unbiased sex ratio). The origin of sperm that fertilized the eggs did not affect this
property of the female. Given that there are no secondary sexual characteristics in
Mytilus, this classification of females was originally based on the presence or
absence of the M genome in the gonads of their progeny (presence equated to
maleness, absence to femaleness). It was subsequently observed from pedigrees of
laboratory lines that the sex-ratio bias was inherited: daughter-biased mothers
produced more often daughter-biased female progeny than male-biased mothers.
These observations led to conclusion that in Mytilus sex is determined exclusively
by the mother’s nuclear genotype. From previous studies it was known that the
Mytilus sperm contains five (and, rarely, four or six) mitochondria of large size
(Longo and Dornfeld 1967). These “mega-mitochondria” are apparently the product
of fusion of many “normal size” mitochondria (in a way analogous to that known to
occur in the sperm of Drosophila; DeLuca and O’Farrell 2012) and can be easily
seen under the microscope if stained with Mitotracker Green FM.
28 E. Zouros and G. C. Rodakis
Cao et al. (2004a) examined the fate of sperm mitochondria in eggs from
daughter-biased and son-biased mothers. They observed that in eggs that came
from daughter-biased mothers the sperm mitochondria were randomly dispersed in
the egg cytoplasm and in subsequent egg divisions they segregated randomly among
the blastomeres. In eggs that came from son-biased mothers the five sperm mito-
chondria remained in close proximity to each other. In the two-cell stage all five
mitochondria were found in the same blastomere and very close to the cleavage
furrow that separated the two cells. In the four-cell stage the sperm mitochondria
could be seen aligned in the inner part of the cleavage furrow of blastomere D, which
is the blastomere that gives rise to the mesoderm and the germ line (Verdonk and van
den Biggelaar 1983). This type of segregation and positioning close to the cleavage
furrow continued in subsequent cell divisions and in several occasions, when the
sperm mitochondria could still be seen, it was observed to persist as late as the
trochophore stage and even in larvae of stage D, almost 72 h post-fertilization (Cao
et al. 2004a). The two patterns of sperm mitochondria behavior in early embryo-
genesis were named “dispersed” and “aggregate.” The aggregation is not very
faithful. Occasionally, one or even two sperm mitochondria can be found, in
apparently random position, in different blastomeres than the one that contains the
aggregate.
There is nothing special about the distribution of either the F or the M mtDNA
types in female or male somatic tissues (Fig. 1A, Ba). Occasional presence of M in
female somatic tissues is expected from the fact that in eggs destined to develop into
females the sperm mitochondria are not eliminated, but disperse randomly in the
blastomeres. This expectation is consistent with the observation (see Zouros 2013
for references in Mytilus and the clam Ruditapes philippinarum). No regularity was
found in the presence/absence or amount of the M genome among female tissues.
Erratic presence of the M genome in male somatic tissues is also expected from the
occasional break-away of mitochondria from the aggregate that is formed in eggs
destined to become males. Presence of the M genome in male somatic tissues was
observed more often than female somatic tissues, but it was not commoner in tissues
of mesodermic origin, as would be expected if sperm mitochondria broke away from
the aggregate after the formation of the mesoderm.
Of special interest is the question of whether the M genome that leaks into female
embryos may find its way to eggs, as is shown – as a possibility – in Fig. 1. Ghiselli
et al. (2011) failed to detect the M genome in highly purified collections of eggs from
the venerid Ruditapes philippinarum and suggested that there must be a mechanism
of elimination of M during oogenesis. There is no evidence of such a mechanism in
Mytilus. Garrido-Ramos et al. (1998), Obata et al. (2007), and Sano et al. (2007,
2010) reported occasional presence of M in Mytilus eggs along with the dominant
F. Consistent with this is the detection, in low frequency, of triplasmic individuals
that carried one F and two M genomes. Of these, the most abundant was inherited
from the sperm that the other was apparently present in minute amounts in the egg
along with the F (Obata et al. 2007; Theologidis 2007).
Doubly Uniparental Inheritance of mtDNA: An Unappreciated Defiance of a. . . 29
4
A
1 2 3
n
a Female
soma
Zygote type A n
Egg
B
n
a Male
z z soma
z z z
z z z
z z z z b1
z
z zz
zz z
z
Zygote type B z
z n
b2 c
zz z zzzz
zz z z
z z
PGC z n n
b3
Fig. 1 Ontogenesis and gametogenesis in M. edulis. Blue dot: M-carrying mitochondrion, red dot:
F carrying mitochondrion, n: nucleus, right-low cell: blastomere D. (A) Fertilized egg with the
dispersed pattern of sperm mitochondria. The embryo develops into a female. A somatic cell may be
free of M mtDNA or may contain it in tiny amounts. The latter possibility is even less likely for the
egg. (B) Fertilized egg showing the aggregate pattern of sperm mitochondria. The embryo develops
into a male. Z is the hypothesized factor responsible for the formation of the sperm mitochondria
aggregate that binds to the mtDNA of sperm mitochondria and causes them to form an aggregate
The evidence that the sperm is free of the F genome is much stronger. Venetis
et al. (2006) examined for the presence of F sperm of M. galloprovincialis that was
not forced to swim through a solution of percol and sperm that was forced to swim.
They detected the presence of F in 24 of 36 cases in the first and in none in the
second. The study serves also as an illustration that contamination of DNA prepa-
rations from male gonads by the somatic cells containing the F is hard to avoid.
Ghiselli et al. (2011) used also the percol assay and found no F in the sperm of
R. philippinarum.
30 E. Zouros and G. C. Rodakis
We have no data bearing on the question of how the M genome becomes the
dominant mtDNA in the male gonad from being a minority in the fertilized egg,
beyond the observation that in Mytilus the sperm mitochondria aggregate remains
until stage D (Cao et al. 2004a). Thus, we may only list alternative hypotheses
(Fig. 1). One hypothesis is that the route of the sperm mitochondria that we described
for the early egg divisions continues until the formation of the first primordial germ
cell (PGC). We may call it “the PGC delivery” hypothesis to emphasize that there is
a mechanism in the male embryo that directs and delivers the sperm mitochondria
aggregate in the PGC. The mechanism does not prevent detachment or loss of sperm
mitochondria along the way. But it secures that all or some of these mitochondria
will end in the PGC rather than in somatic tissues or be lost entirely. In Fig. 1 the
PGC delivery hypothesis is presented by cases b1 and b2. There is an important
difference between these two cases. In case b1 it is assumed that there is a mecha-
nism that allows only the aggregate to enter the PGC. In case b2 there is no exclusion
of the F mtDNA from the PGC. Case b3 is the alternative of the PGC delivery
hypothesis. According to it the sperm mitochondria aggregate is dissolved before the
formation of the PGC and sperm mitochondria divide along with egg mitochondria.
The three hypotheses about the formation of the PGC lead to different hypotheses
about the presence of the F and M genomes in the male gonad. In case b1 the
exclusion of the F genome from the PGC explains at once why the male gonad is
dominated by the M genome and why the sperm contains only this genome. But case
b1 requires an explanation about the mechanism of delivery of the sperm mitochon-
dria aggregate in the PGC and the exclusion of the F genome from the PGC. Case b2
also needs an explanation of how the sperm mitochondria are delivered in the PGC,
but it also requires an explanation of how the M becomes dominant in the gonad in
the presence of the F genome and how the F genome is eliminated from the mature
sperm. The last two questions apply also to case b3.
All versions that we have listed above have been mentioned as possibilities in the
studies that dealt with the presence of the F genome in the male germ line (see Zouros
2013 for references). These studies produced unclear and, sometimes, conflicting
results, which, in large degree, can be attributed to difficulty to eliminate contamina-
tion of mtDNA preparations from male gonads with somatic cells that are rich in F
mtDNA. The quantitative study of Obata et al. (2011) of the amount and the degree of
expression of the F and the M genomes in male gonads of M. galloprovincialis
produced a picture of widely varying F/M ratios in various stages of male gonad
development. Interestingly, these authors observed expression of the F type in
spermatogonia and spermatocytes but not in spermatids and spermatozoa. At present
the consensus is that the F genome is present in the male germ line and that its
elimination from the sperm occurs at some late stage of sperm formation.
Doubly Uniparental Inheritance of mtDNA: An Unappreciated Defiance of a. . . 31
The elimination of mtDNA from the sperm is the rule in the animal kingdom.
Assuming that the F genome corresponds to the “standard” type on animal
mtDNA, its elimination from the sperm is the expected outcome. Sutovsky et al.
(1999, 2000) have shown that the mechanism of mtDNA elimination from sperm in
bovines and monkeys involves ubiquitination of the membrane of sperm mitochon-
dria and their subsequent disposal. It is, therefore, reasonable to depart from the
assumption that an analogous mechanism exists in Mytilus (and, by extension, to all
species with DUI) and that the M genome is immune to this mechanism. As we have
noted, there is good evidence in the literature for the presence of the F genome in the
male germ line. If so, how its elimination from the mature sperm is achieved? One
possibility is that the F or the M genome, or both, code for an RNA or a protein factor
which is an indispensible part of the mechanism. The other possibility is that the
mechanism involves a cytoplasmic factor which somehow recognizes and selec-
tively destroys the F mtDNA carrying mitochondria or, inversely, recognizes and
protects the M mtDNA carrying ones.
The existence of open reading frames (ORF) in both mtDNA types in Mytilus and
in unionids favored the hypothesis of an mtDNA coded factor. The hypothesis got
further support from the detection of a protein that corresponds to an ORF in the F
genome of fresh water mussels (Breton et al. 2009, 2011a). The association of this
protein with exclusion of the F genome from the sperm in unionids remains to be
established. The possibility that F or M ORFs code for a protein or an RNA product
in Mytilus is remote. Chatzoglou et al. (2013) studied the mRNAs coded by both the
F and M genomes of M. galloprovincialis. They identified the mRNAs of all mtDNA
coded proteins in the primary transcript and the points of its cleavage in eight
monocistronic, one tricistronic, and one possible bicistronic product. But they failed
to identify any mRNA sequence that could match an ORF in either the F or the M
mtDNA. A more detailed study of the transcriptosome of the same species by
Kyriakou et al. (2014a, b) also produced no evidence for a product coded by an
ORF of the M or the F genome.
The shift of attention to the possibility that the mtDNAs of Mytilus may contain
sequences that interact with a cytoplasmic factor (or factors) produced more encour-
aging results. Kyriakou et al. (2015) performed a series of electrophoretic mobility
shift assays (EMSA) with extracts from male or female gonad as the protein-factor
source and with DNA clones spanning the control region (CR) of the M and F
genomes as binding factors. The control region (CR) of both genomes has been
divided into three domains on the basis of primary sequence variability among F,
among M or divergence between M and F genomes (Fig. 2). The first domain (in the
50 –30 direction) is highly variable (thus called first variable domain, VD1), the
second is highly conserved (conserved domain, CD), and the third is a short highly
variable piece (VD2). Kyriakou et al. (2015) identified a sequence of 151 bp in the
32 E. Zouros and G. C. Rodakis
835
902
17671 1 151 472 473 834
17623
100 bp
Fig. 2 Identification of a sequence motif in the M genome that interacts with a cytoplasmic factor.
The main control region (CR) of the F and the M mtDNA of species of the genus Mytilus are
flanked by the large ribosomal RNA (lrRNA) and the transfer RNA of tyrosine (tRNAtyr). The lower
part shows the clones that were used in EMSA assays. Dark box: the region that binds to protein
factor; grey box: the polyA track that is necessary to bend the mtDNA for the facilitation of the
binding; white box: a helper part of no-specific sequence. The check mark identifies the clones that
produced the complex with proteins from the perinuclear cytoplasm. The smallest tested length of
M mtDNA with the ability to produce the complex was 75 bp
VD1 region of the M genome that produced a shift with the extracts from the male
gonad. Within this 151 bp segment there is a highly conserved element of 23 bp
which is preceded by a poly-A sequence. Both the 23 bp element and the poly-A
track are indispensable for the formation of the complex. The stretch upstream of the
poly-A track is also needed for the formation of the complex, but need not have a
specific sequence. Further, the authors experimented separately with nuclear and
cytoplasmic extracts of the male gonad and found that the shift occurred with the
nuclear but not the cytoplasmic extract. The shift was not produced when they used
the same clones with extracts from eggs or from somatic tissues of males or females.
Clones from the VD1 of the F genome produced no shift with extracts from male or
female gonads. As a kind of control for the EMSA assay, Kyriakou et al. (2013) had
previously used clones from the CD of the F and the M mtDNA. The CD contains
sequences that elicit the molecule’s replication and transmission. As expected, there
was a shift with protein extracts from the cytoplasm.
The model proposed by Kyriakou et al. (2015) for the elimination of the F
genome from the mature sperm is shown in Fig. 3. A cell that is destined to produce
a spermatozoon is assumed to contain M-carrying and F-carrying mitochondria and a
“protection factor,” Z, which is located close to the nuclear membrane. Because the
authors used for protein extraction whole male gonads (which consist of cells at
various stages of maturation), cell 1 of Fig. 3 can, theoretically, be of any stage of
Doubly Uniparental Inheritance of mtDNA: An Unappreciated Defiance of a. . . 33
4
1 2 3
zz z zz
zz z
z z
n n n
Fig. 3 A model for the exclusion of F mtDNA from the sperm. Blue dot: M-carrying mitochon-
drion, red dot: F carrying mitochondrion, n: nucleus, Z the hypothetical “protector” factor. Stage 1:
Male gonadal cell. Stage 2: Gonadal cell just before it becomes spermatid. Stage 3: Spermatid.
Stage 4: Mature sperm. Mitochondria marked with x denote mitochondria that are destroyed in late
spermatogenesis by a mechanism that is assumed to be common to species with and without DUI. Z
is the same factor shown in Fig. 1
parents
gametes
sex genotype sex type frequency
male ee [R], Ee [H], EE [D] sperm (Z–S0) [1]
– 1
female ee [r] eggs (Z S ) [1]
(Z+S2) [1–k]
offspring
sperm eggs
(Z–S0) (Z–S1) (Z+S2)
population
h = [(1–(1–2k(1–k))1/2)/(2k(1–k))] H = [(1–4d2)/2]
d = [(1–2h(1–k))/2] D = [(1+2d)2/4]
r = [(1–2hk)/2] R = [(1–2d)2/4]
Fig. 4 The genetic model for the explanation of the major features of DUI. The upper part gives the
types of gametes produced by males and females of a different genotype at locus E. R, H, and D are
the population frequencies of the three genotypes among males, and r, h, and d among females.
Diamond is locus Z and squares are copies of locus S. Dark denotes unconditional inactivation, gray
inactive state, and white active state. Superscripts of S denote the number of active copies of S, Z
and Z+ denote that locus Z is expressed or not expressed. The middle part gives the “phenotypes” of
progeny resulting from any combination of sperm and egg. The lower part gives the equilibrium
frequencies of the three genotypes at locus E as a function of k
crosses for the same three characteristics. They observed that in treated eggs there
was no aggregate formation, adult offspring from these eggs produced male gonads,
and these gonads did not contain the M genome. Eggs from the same crosses that
were not treated with cytochalasin B did not show the sperm aggregate and devel-
oped female gonads that lacked the M genome. They repeated the experiment with
eggs derived from mothers that produced mainly sons. The majority of eggs showed
the aggregate sperm in both treated and untreated eggs and developed male gonads
that contained the M genome. The only difference between male gonads from
untreated and treated eggs was that the gonad was normal in the first and with
irregularities of different kinds in the second.
These results point directly to the following conclusions. Formation of the sperm
aggregate and presence of the paternal mtDNA genome in the gonad of the resulting
individual, and, reversely, lack of the aggregate and lack of the paternal genome, go
together and are determined by the mother’s nuclear genotype. Maleness is also
determined by the mother’s nuclear genotype, but it does not require formation of the
sperm mitochondria aggregate or the presence of the paternal mtDNA genome in the
gonad. Maleness is not dependent on the presence of the paternal mtDNA genome.
Under normal circumstances (i.e., when the cross is homospecific and the eggs are
not diplodized) maleness and sperm mtDNA co-occur. The simplest assumption of
this coupling would be that the nuclear factor which is expressed in the female parent
and causes maleness in her offspring and the factor that allows the sperm mtDNA to
enter the germ line of these offspring are tightly linked in the nuclear genome and
co-expressed in oogenesis. Triploidization interferes with sex determination but not
with the fate of sperm mtDNA.
The key observation that led to the discovery of DUI was the presence in any mussel
population of two highly divergent mtDNA molecules of which one was transmitted
though the egg and the other through the sperm. This picture was clouded by the
detection of mtDNA molecules whose primary sequence highly resembled the
sequence of the F genome, yet they were transmitted by the sperm. At the beginning
these genomes were considered as F genomes which had “invaded” the male-
transmitted mtDNA lineage and were, since then, transmitted by the sperm. They
were also called “masculinized” genomes, in anticipation of “feminized” genomes,
i.e., M genomes that might have invaded the female-transmitted lineage.
No feminized genomes were observed to this date. Masculinization presented,
however, a major challenge for the understanding of DUI. Happily the problem was
dissolved in a way that turned masculinization into a tool for the understanding of the
molecular mechanism of DUI and its phylogenetic distribution in bivalve mollusks.
One consistent observation in Mytilus edulis/galloprovincialis and the closely
36 E. Zouros and G. C. Rodakis
related species M. trossulus was that the masculinized genomes differed from the
“true” (egg-transmitted) F genomes in the VD1 region of the control region (CR),
thus making this region the primary suspect for sequences involved in the determi-
nation of the route of transmission (Burzynski et al. 2003; Cao et al. 2004b). Soon
afterword it was shown that recombination between mtDNA molecules is possible in
mussels (Ladoukakis and Zouros 2001) and that it had occurred in the history of
several animal species (Piganeau et al. 2004; Tsaousis et al. 2005). Thus, the
hypothesis that “masculinizing” sequences were transferred from the M genome to
the F via recombination became very appealing. The conserved domain (CD) of the
control region maintains the highest sequence similarity between the F and M
genomes in Mytilus and could act as the site of the recombination.
The hypothesis was tested by obtaining the full sequence of the so-called C
genome (Venetis et al. 2007). This is a masculinized genome that occurs in low
frequencies in M. galloprovincialis populations, but it may reach high frequencies in
some populations (Ladoukakis et al. 2002). Venetis et al. (2007) found that the
protein and RNA coding parts of genome C differed little from the standard
egg-transmitted F genome, but the CR was very different (Fig. 5). It consisted of
four tandem repeats of the typical CR. The first and the fourth copy were mosaics of
F and M sequences but the second and third were identical to the control region
of the M genome with the exception of the first 199 bp of the VD1 domain that were
missing. The most parsimonious explanation of the emergence of genome C is a
duplication of the CR of the M genome which allowed for a misalignment of the M
and F genomes and for a crossing over at the CD that shares high sequence
similarities in the two genomes. Interestingly the compound CR of the C genome
contains three identical sequences each of which contains the full 151 bp that
Kyriakou et al. (2015) identified as the sequence necessary for the binding of the
M genome with a factor in the perinuclear extract of male gonads (Fig. 2). The
inference is that the C genome is rescued from the mitochondrial destruction that
occurs in the pre-spermatid stage in the same way as the standard M genome.
CR
CR
l-rRNA VD1.1 CD.1 VD2 ΔVD1.2 CD.2 VD2 ΔVD1.3 CD.3 VD2 ΔVD1.4 CD.4 VD2.4 Y Cyt b
.1 .2 .3
YΔ.1 YΔ.2 YΔ.3
CR Y
D
IQ
l-r
tb
RN
C
E Cy
A
N K
II M2
G s
-rR CO
NA L1
F C-mtDNA L2
ND6 ND1
19109 bp
V
ND5 ND
4
4L CO
ND III
A6
ND
T
COI
S2
ND3
R M1
P W
H A
S1
Fig. 5 The paternally inherited C mtDNA of Mytilus galloprovincialis. The entire genome is
shown in circular form. Letters are the standard symbols for protein and RNA genes. Black boxes
are replication and transcription control regions. The DNA sequence of all coding genes and of the
two minor control regions are F-type. The CR of the C genome consists of three repeats of the CR of
the M genome inserted between the VD1 and the Y gene of the F genome. Δ stands for deletion
species, some of which are as distantly related as the mytilid genera, formed an
impressive gender-specific phylogeny.
A model that explains these observations is shown in Fig. 7. Part A shows three
pairs of species of different phylogenetic relationship. It is assumed that the F and M
genomes diverged from one common mtDNA in the distant past. Species 1 and
2 have recently diverged from a common ancestor species from which they inherited
the same F and the same M genome. In time the F genomes that were “trapped” in
different species diverged from each other and so did the M genomes, the latter at a
higher rate. If scored at this stage the four genomes would cluster according to their
mode of inheritance rather than taxon origin (gender-joining phylogeny). Given
enough time a new sperm-transmitted genome, M3, will emerge from the F genome
(first masculinization event) and may eventually replace M1. At the moment of
masculinization the F/M divergence will be set to zero (the two genomes will differ
only at the CR where the recombination that transferred the masculinizing sequences
from the M to the F occurred). The descendant species 3 will contain this masculin-
ized genome along with the F of species 1, which will have diverged and recognized
38 E. Zouros and G. C. Rodakis
Pectinoida
Ostreoida
Geukensia demissa M
Geukensia demissa F
Brachidontes exustus M
Pteriomorphia
Brachidontes exustus F
Mytiloida
Musculista senhusia M
Musculista senhusia F
Mytilus californianus M
Mytilus californianus F
Mytilus trossulus M
Mytilus edulis M
Mytilus trossulus F
Mytilus edulis F
Heterodonta
Quadrula quadrula M
Venustaconcha ellipsiformis M
Unionida Lampsilis ornata F
Venustaconcha ellipsiformis F
Quadrula quadrula F
Hyriopsis cumingii F
Inversidens japanensis F
Pyganodon grandis F
Octopus vulgaris
Fig. 6 The phylogenetic relationship of maternally (F) and paternally (M) transmitted mtDNA
genomes of species from three super-families of bivalvian mollusks. Phylogenies involving a much
larger number of species (Gusman et al. 2016) are consistent with the conclusions drawn from the
above set of species (taken from Zouros 2013; original data from Theologidis et al. 2008 and
Doucet-Beaupre et al. 2010)
as different (F3). If the four genomes of species 3 and 4 are grouped they will
produce a tree that will reflect neither the mode of inheritance nor the taxon origin
(mixed phylogeny). For two distantly related species (species 5 and 6) the time of
divergence from the common ancestor species would be long enough for a mascu-
linization to occur and replace the ancestral M. If this happened, the comparison of
Doubly Uniparental Inheritance of mtDNA: An Unappreciated Defiance of a. . . 39
distantly
A related
taxa
related
taxa
closely
related M3 M5
taxa
ancestral F1
species
F3 F5
M1
X time
M6
F2 F4
F6
M2 M4
X
B M1 M2 M3 M4 M5 M6
F1 F2 F3 F4 F5 F6
Fig. 7 How masculinization may explain the various phylogenetic patterns among F and M
genomes from different taxa. (a) Three pairs of species of different phylogenetic distance. Dots
denote masculinization events and X extinction events. (b) The three types of clustering of F and M
genomes from a pair of species
species 5 and 6 would produce a taxon-joining phylogeny, i.e., one in which the two
genomes of each species cluster together.
Figure 6 implies that multiple masculinization events followed by replacement of
the old M have occurred in the long time (perhaps hundreds of millions years) that
separated the deep branches of bivalvian mollusks, such as Pteriomorpha and
Heterodonta. In Mytiloida we have all three types of phylogeny. There has been
no fixed masculinization during the time that separated M. edulis from M. trossulus.
One such event occurred after the lineage that produced M. californianus broke
away from the lineage that produced the two previous species. All four mytiloid
genera have been separated for a time long enough for multiple masculinization
events to occur in the lineages that produced them. The simplest explanation for the
gender-joining phylogeny of the unionid species is that in these species there can be
no crossing over between the M and F genomes of the type that would transfer
masculinizing sequences from the first to the second. This may be either because the
conserved domains of the F and M phylads (the analogs of the CD of Mytilus) have
diverged to the point that no recombination may occur or because the masculinizing
sequences are not in the vicinity of conserved sequences.
The presence/absence of DUI in bivalve mollusks is spotty and irregular
(Theologidis et al. 2008). On face value, this suggests either that DUI emerged
once in the phylum of molluscan bivalves and was subsequently lost in several
lineages or arose independently in several lineages. The evidence we have at present
is not conclusive on this point. If DUI arose only once, the event must be very old,
perhaps as old as 400 million years. If DUI has multiple and independent origins, its
molecular mechanism must be fairly simple and only its details may vary among
40 E. Zouros and G. C. Rodakis
distant species that share the phenomenon. Such differences have, indeed, been
observed. One is the aforementioned lack of masculinization in unionids and the
amount of the M genome in somatic tissues. But, again, such variations may be
expected under the hypothesis of single origin and the very long time that separates
the major phylogenetic divisions of the super-class Autolamellibranchia that con-
tains all known species with DUI. An answer could be obtained if the presence of
DUI was found to co-occur consistently with some other basic feature of the species’
biology. Breton et al. (2011b) observed discordance between DUI and hermaphro-
ditism in a small collection of unionid species in which hermaphroditism appeared to
have arisen independently. They suggested that the transition from dioeciousness to
hermaphroditism is accompanied with DUI loss. The idea that hermaphroditism is
incompatible with DUI is interesting and must be looked in more species with
different taxonomic relationships.
The one-factor model that we describe here (see Sect. 2.8) has a strong bearing on
the question of the origin of DUI. In a species that has the sex-determining mechanism
that we proposed for Mytilus all that is required for the appearance of DUI is the
emergence of a gene, Z, in close proximity to the on/off copy of the sex determining
locus S (Fig. 4). This would mean that a species in which females are either daughter
or son producers is vulnerable to becoming a DUI species. The inverse does not
follow. Whereas any species with DUI will have females with highly biased sex-ratio
progeny, not all species with this feature will have DUI. Under the one-factor model
the multiple origin of DUI may not be highly improbable and two or more species with
DUI need not be similar in all details. Loss of DUI is more problematic. If high
sex-ratio biases of opposite direction among females is a condition for the operation of
DUI, then loss of the bias in a species, for whatever reason, would mean the collapse of
DUI and the transition to standard uniparental transmission of maternal mtDNA. Also,
high sex ratio bias would elevate founder and small population size effects, making, in
the long run, DUI species more vulnerable to extinction compared to species with
standard maternal mtDNA inheritance. This might be one way to explain the presence
of a species with standard maternal inheritance in a cluster of species or families that
contain mostly DUI species.
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