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Fifth Edition
Microbiology
With Diseases by Taxonomy
Co n t r i b u t i o n s By:
C l i n i c a l C o n s u lta n t s :
To Michelle: Copyright ©2017, 2014, 2011 Pearson Education, Inc. All Rights Reserved. Printed in the United States of
America. This publication is protected by copyright, and permission should be obtained from the publisher
My best friend, my prior to any prohibited reproduction, storage in a retrieval system, or transmission in any form or by
closest confidant, any means, electronic, mechanical, photocopying, recording, or otherwise. For information regarding
permissions, request forms and the appropriate contacts within the Pearson Education Global Rights &
my cheerleader, Permissions department, please visit www.pearsoned.com/permissions/.
my partner, my Acknowledgements of third party content appear on page C-1, which constitutes an extension of this
love. Thirty-four copyright page.
years! I love you PEARSON, ALWAYS LEARNING, MasteringMicrobiology® and MicroFlix™ are exclusive trademarks in the
U.S. and/or other countries owned by Pearson Education, Inc. or its affiliates.
more now than
then. Unless otherwise indicated herein, any third-party trademarks that may appear in this work are the
property of their respective owners and any references to third-party trademarks, logos or other trade
—Robert dress are for demonstrative or descriptive purposes only. Such references are not intended to imply any
sponsorship, endorsement, authorization, or promotion of Pearson’s products by the owners of such marks,
or any relationship between the owner and Pearson Education, Inc. or its affiliates, authors, licensees or
distributors.
Preface
The reemergence of whooping cough, mumps, and measles and the emergence of snail fever, spot-
ted fever rickettsiosis, Middle East respiratory syndrome, and other diseases; the cases of strep
throat, MRSA, and tuberculosis; the progress of cutting-edge research into microbial genetics; the
challenge of increasingly drug-resistant pathogens; the continual discovery of microorganisms
previously unknown—these are just a few examples of why exploring microbiology has never
been more exciting, or more important. Welcome!
I have taught microbiology to undergraduates for over 27 years and witnessed firsthand how
students struggle with the same topics and concepts year after year. To address these challenging
topics, I have created 14 new Video Tutors: three in addition to those already incorporated into the
first 18 chapters of the text and 11 that cover the Disease in Depth features. The Video Tutors and
Disease in Depth features walk students through key concepts in microbiology, bringing the art of
the textbook to life and important concepts into view. In creating this textbook, my aim was to help
students see complex topics of microbiology—especially metabolism, genetics, and immunology—
in a way that they can understand, while at the same time presenting a thorough and accurate
overview of microbiology. I also wished to highlight the many positive effects of microorganisms
on our lives, along with the medically important microorganisms that cause disease.
• NEW Disease in Depth features highlight important and representative diseases for each body
system, extending the visual impact of the art program as well as the highly praised M icrobe at a
Glance features. Each of these 11 visual features contains infographics, provides i n-depth cover-
age of the selected disease, and includes a QR code and Investigate It! question that d irects stu-
dents to a Video Tutor exploring the topic and prompting further inquiry and critical thinking.
x
Preface xi
• NEW Video Tutors developed and narrated by the author walk students through key con-
cepts. New to this edition are Video Tutors on glycolysis, protein translation, and antigen
processing. These Video Tutors bring the textbook art to life and help students visualize and
understand tough topics and important processes. Thirty-two video tutorials are accessible
via QR codes in the textbook and are accompanied by multiple-choice questions, assignable
in MasteringMicrobiology®.
• NEW Tell Me Why critical thinking questions end every main section within each chapter.
These questions strengthen the pedagogy and organization of each chapter and consistently
provide stop-and-think opportunities for students as they read.
• The genetics chapters (Chapters 7–8) have been reviewed and revised by genetics special-
ists. These now reflect the most current understanding of this rapidly evolving field, includ-
ing new discussion of next-generation DNA sequencing.
• Over 330 NEW and revised micrographs, photos, and figures enhance student under-
standing of the text and boxed features.
MasteringMicrobiology offers students access to Dynamic Study Modules to help them acquire,
retain, and recall information faster and more efficiently than ever before with textbook-specific
explanations and art. Dynamic Study Modules are available for use as a self-study tool or as
assignments. Instructors also now have the option to give Adaptive Follow-Up assignments that
provide student-specific additional coaching and practice. These question sets continuously adapt
to each student’s needs, making efficient use of homework time.
MasteringMicrobiology also includes Learning Catalytics—a “bring your own device” student
engagement, assessment, and classroom intelligence system. With Learning Catalytics, instructors
can assess students in real time using open-ended tasks to probe student understanding using
Pearson’s library of questions or designing their own.
The following section provides a detailed outline of this edition’s chapter-by-chapter revisions.
xii CHAPTER 1 A Brief History of Microbiology
Chapter-by-Chapter Revisions
• Expanded table comparing and contrasting DNA replication, • Revised seven figures for greater clarity, accuracy, ease of reading,
transcription, and translation and better pedagogy (Figs. 10.2, 10.3, 10.6, 10.8, 10.13, 10.15; map of
• Discussed codon and tRNA for 21st amino acid, selenocysteine worldwide, community-associated MRSA)
• Enhanced and clarified discussion of lac and trp operons and of the • Three new photos (Highlight, Fig. 10.10, Clinical Case Study)
action of cAMP and CAP as activators • Added three critical thinking questions to Emerging Disease Case
• Expanded and reorganized discussion of DNA repair systems Study: Community-Associated MRSA and updated map with
• Clarified and updated information on the events in conjugation, newly published data
particularly with Hfr cells
• Expanded coverage of nucleotides and pyrophosphate (diphosphate) Chapter 11 Characterizing and Classifying
• Added critical thinking questions to Emerging Disease Case Study: Prokaryotes
Vibrio vulnificus Infection • Added four Tell Me Why critical thinking questions to text
• Revised the chapter to better explain differences between archaeal, • Six new Learning Outcomes (for proteobacteria, including newly
bacterial, and eukaryotic genetics discovered zetaproteobacteria)
• Added fill-in Concept Map over point mutations • Thirteen new photos (Figs. 11.1, 11.2a, 11.5, 11.7, 11.11a, 11.16, 11.17,
11.19, 11.21, 11.22, 11.23, 11.24b, 11.27b)
Chapter 8 Recombinant DNA Technology • Ten revised figures for better pedagogy (Figs. 11.1, 11.3, 11.4, 11.6,
• Added five Tell Me Why critical thinking questions to text 11.10, 11.14, 11.17, 11.21, 11.26, 11.27)
• Added six Learning Outcomes concerning uses of synthetic nucleic • Clarified and expanded coverage of (1) “snapping division,”
acids, PCR, fluorescent in situ hybridization (FISH), functional which is a distinctive characteristic of corynebacteria, i ncluding C.
genomics, Sanger sequencing, and next-generation sequencing diphtheriae, (2) floc formation and its use in s ewage treatment, and
• Added one new figure (Fig. 8.10) (3) methicillin-resistant strains of Staphylococcus aureus
• Modified Fig. 8.7 for better pedagogy • Updated with new discoveries in bacterial and archaeal
• Deleted figures for Southern blots and Sanger automated DNA systematics: six classes of proteobacteria rather than four and five
sequencing as these techniques are historical and less-commonly phyla of archaea (rather than two)
used today • Removed box on Botox and box on the possible link between
• Added discussion of real-time PCR (RT-PCR), Sanger sequencing cyanobacteria and brain disease to make room for new material
methods, next-generation DNA sequencing (NGS), including • Three new critical thinking questions over pertussis as a
pyrosequencing and fluorescent methods, functional genomics, reemerging disease
microbiomes, and biomedical animal models • Added fill-in Concept Map over domain Archaea
• New Highlight boxes: How Do You Fix a Mosquito? on controlling
dengue and The Human Microbiome Project Chapter 12 Characterizing and Classifying
Eukaryotes
Chapter 9 Controlling Microbial Growth in the • Added six Tell Me Why critical thinking questions to text
Environment • Eight new photos (Figs. 12.11, 12.12a and b, 12.13c, 12.14, 12.20,
• Added four Tell Me Why critical thinking questions to text 12.25, 12.27)
• Revised five figures for better accuracy, currency, and pedagogy • Seven revised figures for more accurate and lucid pedagogy
(Figs. 9.2, 9.7, 9.13, 9.15, 9.16) (Figs. 12.1, 12.3, 12.7, 12.8, 12.17, 12.23; map for aspergillosis)
• Two new photos (Fig. 9.9, Beneficial Microbes) • As reviewers requested, shortened chapter by eliminating detailed
• Updated techniques for deactivation of prions, coverage of discussion and artwork of ciliate (Paramecium) conjugation
thimerosal in vaccines, and activity of AOAC International in and of sexual reproduction by zygomycetes, ascomycetes, and
developing disinfection standards basidiomycetes
• Added three critical thinking questions to Emerging Disease Case • Updated algal, fungal, protozoan, water mold, and slime mold
Study: Acanthamoeba Keratitis taxonomy
• Added critical thinking question concerning salmonellosis • Clarified and expanded coverage of (1) meiosis, (2) alveoli in
pandemic from smoked salmon protists, and (3) use of radiation as an energy source for some fungi
• Added fill-in Concept Map over moist heat applications to control • Added new critical thinking questions: three about the emerging
microbes disease aspergillosis and two at end of chapter about genomics in
relationship to metabolism in various environments
Chapter 10 Controlling Microbial Growth in the • Added fill-in Concept Map over eukaryotic microorganisms
Body: Antimicrobial Drugs
• Added four Tell Me Why critical thinking questions to text Chapter 13 Characterizing and Classifying Viruses,
• Updated and revised tables of antimicrobials to include all Viroids, and Prions
new antimicrobials mentioned in disease chapters, including • Added four Tell Me Why critical thinking questions to text
carbapenems and capreomycin (antibacterials); enfuvirtide (newly • Four new photos (Figs. 13.1b, 13.21, 13.24; bacteriophage box)
approved anti-HIV-1); ciclopirox (antifungal); and bithionol • Upgraded eight figures for better pedagogy and currency (Figs.
(anthelmintic); updated sources of drugs, modes of action, clinical 13.5, 13.8, 13.12, 13.13, 13.14, 13.16, 13.18, 13.22)
considerations, and methods of resistance • One new figure showing prion templating (Fig. 13.23)
• Updated adverse effects of aminoglycosides • Two new Learning Outcomes concerning (1) structures of viruses
• Updated the mechanism of resistance against quinolone and (2) control of prions
antibacterial drugs • Updated viral nomenclature to correspond to changes approved by
• Removed amantadine as a treatment for influenza A the International Committee on Taxonomy of V iruses (ICTV) in 2014
xiv Chapter-by-Chapter Revisions
• Added discussion on the benefits and costs to a virus of having an • Revised five figures for better pedagogy (Figs. 17.2, 17.3, 17.6,
envelope versus being naked 17.11, 17.14)
• Clarified and expanded text concerning lytic cycle of phage
replication; use of phage typing; replication of animal viruses, Chapter 18 Hypersensitivities, Autoimmune Diseases,
particularly ssDNA viruses; link between viruses and human and Immune Deficiencies
cancers; viroids; and prions • Added three Tell Me Why critical thinking questions to text
• Updated techniques for deactivation of prions and treatment of • Revised one figure for greater clarity and accuracy (Fig. 18.7)
prion disease • Expanded coverage of type III hypersensitivity, the relationship
• Updated Emerging Disease Case Study: Chikungunya; added three between hypersensitivities and autoimmune disorders
critical thinking questions to the discussion • Removed figure and text for a very rare disease, immune throm
bocytopenic purpura, to make room for new material in
Chapter 14 Infection, Infectious Diseases, and Chapter 19
Epidemiology
• Added eight Tell Me Why critical thinking questions to text Chapter 19 Pathogenic Gram-Positive Bacteria
• Changed eight figures for better pedagogy, timeliness, or clarity • Added nine Tell Me Why critical thinking questions to text
(Figs. 14.3, 14.4, 14.5, 14.9, 14.10, 14.14, 14.16, 14.20) • Added three Disease in Depth visual presentations of disease:
• Revised and updated coverage of (1) number of human cells in a necrotizing fasciitis, listeriosis, and tuberculosis
body and the number of cellular microbiota, (2) microbiome, and • Twenty-five new photos (Figs. 19.1, 19.12, 19.17, 19.19, 19.20, 19.21)
(3) symbioses (added terms symbiont and amensalism) • Seven revisions to figures for consistency, currency, accuracy, and
• Updated to replace term nosocomial with healthcare-associated (in all better pedagogy (Figs. 19.5, 19.23; Disease in Depth: Necrottizing
chapters) Fasciitis, Listeriosis, and Tuberculosis; Microbe at a Glance:
• Updated epidemiology charts, tables, and graphs Streptococcus and Clostridium)
• Updated list of nationally notifiable infectious diseases • Updated all diagnoses and incidence data
• Three new critical thinking questions added to the d iscussion of • Revised two Learning Outcomes for better pedagogy (19.10, 19.13)
Hantavirus as an emerging disease • Revised Chapter Summary for better pedagogy (for Staphylococcus;
• Added fill-in Concept Map over transmission of diseases Streptococcus; Enterococcus, Bacillus; Clostridium; Listeria; Mycoplasma;
Corynebacterium; Mycobacterium)
Chapter 15 Innate Immunity • Updated definitions for multi-drug-resistant (MDR) and
• Added two Tell Me Why critical thinking questions to text extensively drug-resistant (XDR) tuberculosis
• Modified nine figures for enhanced clarity and better pedagogy • Updated treatment regimen for inhalation anthrax, bioterrorist
(Figs. 15.4, 15.6, 15.7, 15.8, 15.9, 15.11, 15.12, 15.13, 15.14) anthrax, botulism, tetanus, listeriosis, m
ycoplasmal p neumonia,
• Three new photos (Figs. 15.1, 15.5b) nongonococcal urethritis, and tuberculosis
• Updated and expanded coverage of the action of antimicrobial • Updated and enhanced discussion of mycolic acids, role of
peptides (defensins), Toll-like receptor 10 (TLR10), complement Streptococcus mutans in tooth decay, and anthrax vaccine
activation, complement cascade, and membrane attack complexes • Added a figure question regarding snapping division in
• Expanded and clarified discussion of inflammatory mediators corynebacteria
• Added three critical thinking questions and updated incidence
Chapter 16 Specific Defense: Adaptive Immunity maps for the discussion of Buruli ulcer
• Added three Tell Me Why critical thinking questions to text • Added Clinical Case Study regarding tuberculosis
• Revised and clarified (1) function and structure of tonsils, (2) flow
of lymph, and (3) mucosa-associated lymphoid tissue Chapter 20 Pathogenic Gram-Negative Cocci
• Reordered the discussion of topics in adaptive immunity to better and Bacilli
align with the way events occur; for example, MHC and antigen • Added three Tell Me Why critical thinking questions to text
processing are discussed before T cells and cell-mediated immunity, • Added one Disease in Depth visual presentation of disease on
which are discussed before B cells and antibody-mediated immunity urinary tract infections
• Removed discussion of T-independent antibody immunity as it was • Updated all diagnoses and incidence data, including maps
too advanced for beginning students • Updated to replace term nosocomial with healthcare-associated
• Revised three pieces of art for enhanced pedagogy (Figs. 16.2, 16.3, • Revised Chapter Summary for better pedagogy (Pathogenic, Gram-
16.10) Negative, Facultatively Anaerobic Bacilli; Pathogenic, Gram-Negative,
• Added three critical thinking questions and updated incidence map Aerobic Bacilli; Pathogenic, Gram-Negative, Anaerobic Bacilli)
for the discussion of microsporidiosis • Updated treatment regimen for gonorrhea, meningococcus
• Added fill-in Concept Map over antibodies meningitis, bubonic plague, bartonellosis, brucellosis, and
Legionnaires’ disease
Chapter 17 Immunization and Immune Testing • Added one new figure (Fig. 20.1) and figure question on the
• Added a Tell Me Why critical thinking question to text potential effects of lipid A
• Updated to newly revised CDC 2015 vaccination schedule for • Revised nine figures for better pedagogy (Microbe at a Glance:
children, adolescents, and adults Neisseria gonorrhoeae; Figs. 20.2, 20.3, 20.14, 20.18, 20.19, 20.22,
• Updated table of vaccine-preventable diseases in the United States 20.23, 20.28)
• Enhanced discussion of development of attenuated viral vaccines • Added three critical thinking questions and updated incidence
• Added two points to chapter summary about recombinant gene maps for the discussion of melioidosis
technology and vaccine production and about vaccine safety
Chapter-by-Chapter Revisions xv
Chapter 21 Rickettsias, Chlamydias, Spirochetes, • Eight revised, updated, enhanced, and pedagogically more effective
and Vibrios figures (Figs. 23.1, 23.3, 23.5, 23.6, 23.9, 23.14, 23.17, 23.24)
• Added three Tell Me Why critical thinking questions to text • Added three critical thinking questions and updated incidence
• New Disease in Depth: Spotted Fever Rickettsiosis maps for the discussions of babesiosis and of schistosomiasis
• Updated all diagnoses and incidence data • Added fill-in Concept Map over intestinal protozoan parasites
• Modified/updated nine figures (Figs. 21.1, 21.2, 21.3, 21.5, 21.8,
21.12, 21.13, 21.17, 21.20) Chapter 24 Pathogenic DNA Viruses
• Two new photos (Figs. 21.11, 21.19) • Added five Tell Me Why critical thinking questions to text
• Updated treatment regimen for rickettsial spotted fever (Rocky • Updated all diagnoses and incidence data
Mountain spotted fever, RMSF), murine typhus, scrub typhus, • Updated treatment regimen for shingles, history of smallpox
human monocytic ehrlichiosis, anaplasmosis (formerly called vaccination, and the effect of adenovirus 36 on obesity
human granulocytic ehrlichiosis), lymphogranuloma venereum, • Four new photos (Figs. 24.3, 24.15, 24.16c, 24.22)
trachoma, cholera, and gastric ulcers • Reformatted one figure for better pedagogy (Fig. 24.21)
• Updated and expanded coverage of epidemic typhus, murine • Added three critical thinking questions and updated incidence
typhus, scrub typhus, spotted fever rickettsioses (RMSF), maps for the discussion of monkeypox
ehrlichiosis, anaplasmosis, lymphogranuloma venereum, urethritis, • New Disease in Depth: Papillomas with three new photos and three
yaws, Borrelia, and cholera new figures
Denice D. King
Book Reviewers Cleveland State Community College
Christopher Thompson
Loyola University, Maryland
Dena Berg Todd Martin Marie N. Yearling
Tarrant County College Metropolitan Community College, Laramie County Community College
Carroll Bottoms Blue River
Collin College Jennifer Metzler
Nick Butkevitch Ball State University Video Tutor Reviewers
Schoolcraft College Mary Miller Jason Adams
Kari Cargill Baton Rouge Community College College of Dupage
Montana State University Alicia Musser
Abiodun Adibi
Richard J. Cristiano Lansing Community College
Houston Community College Hampton University
Gregory Nasello
Northwest—Spring Branch campus Lewis and Clark Community College Melody J. Bernot
Ann Evancoe Dana Newton Ball State University
Hudson Valley Community College College of the Albemarle Denise Foley
Tod Fairbanks Johanna Porter-Kelley Santiago Canyon College
Palm Beach State College Winston-Salem State University Emily Getty
Teresa G. Fischer Jennifer Reaves Ivy Tech Community College
Indian River State College Jackson State Community College Mary Ann Arnold Hedrick
Sandra M. Fox-Moon Jackie Reynolds Wytheville Community College
Anne Arundel Community College and Richland College
University of Maryland Cristi Hunnes
Steven Scott Rocky Mountain College
Eric Gillock Merritt College
Fort Hays State University Sudeep Majumdar
Amy Siegesmund
Raymond Harris Temple College
Pacific Lutheran University
Prince George’s Community College Tony A. Slieman Bhavya Mathur
Jennifer Hatchel University of South Dakota Chattahoochee Technical College
College of Coastal Georgia Lori Smith Daniel Brian Nichols
Barbara R. Heard American River College Seton Hall University
Atlantic Cape Community College Vetaley Stashenko Kevin Sorensen
Nazanin Hebel Palm Beach State College, Belle Glade Snow College
Houston Community College—Northwest Jennifer Swartz Sandra L. Specht
Amy Helms Pikes Peak Community College Sinclair Community College
Collin College
David T. Jenkins
University of Alabama at Birmingham
xvi
Acknowledgments
As has been the case with all previous editions, I am ever more Thanks to Michéle Shuster and Amy Helms for their work on
cognizant that this book is a team effort. I am deeply grateful the media and print supplements for this edition. Special thanks
once again to Kelsey Churchman of Pearson Science and to the are due to Lauren Beebe and Andrea Stefanowicz for managing
team she gathered to produce the fifth edition. Kelsey, dedicated the supplements, to Kyle Doctor in production for his work on
project manager Lauren Beebe, and invaluable program the Instructor’s Resource DVD, and to Joe Mochnick for his
manager Chriscelle Palaganas helped develop the vision for management of the extraordinary array of media resources for
this fifth edition, generating ideas to make it more effective and students and instructors, especially MasteringMicrobiology®.
compelling. As project manager, Lauren also had the unenviable Thanks also to Jordan Roeder, RN, and Nan Kemp and for
task of coordinating everything and keeping me on track—thank their administrative, editorial, and research assistance. I am
you, Lauren, for being understanding, patient, and lenient, grateful to Neena Bali and now Lauren Harp in Marketing; they
especially when I misplaced a deadline. Kari Hopperstead was lead the amazing Pearson sales representatives to do a terrific
invaluable in developmental editing. I am grateful. job of keeping in touch with the professors and students who
provide so many wonderful suggestions for this textbook. As
Thank you to Barbara Yien, project editor of the first two always, I am humbled, inspired, and encouraged by the sales
editions, for years of support and for introducing me to representatives; your role on the team deserves more gratitude
chocolate truffles. I am excited for your growing family and than I can express here or with citrus fruit.
new responsibilities! I am grateful to Frank Ruggirello for his
unflagging encouragement and support of my work and this I am especially grateful to Phil Mixter of Washington State
book; enjoy your new adventures! I am also indebted to Daryl University, Mary Jane Niles of the University of San Francisco,
Fox, whose early support for this book never wavered. Bronwen Steele of Estrella Mountain Community College, Jan
Miller of American River College, and Jane Reece for their
Anita Wagner Hueftle—the eagle-eyed—edited the manuscript expertise and advice.
thoroughly and meticulously, suggesting important changes
for clarity, accuracy, and consistency. The incomparable Kelly I am further indebted to Sam Schwarzlose for his excellent work
Murphy did a magnificently superb job as art development on the Video Tutor assessments and to Terry Austin for lending
editor, helping to conceptualize new illustrations and his technical expertise to the project.
suggesting ways to improve the art overall—thank you,
Kelly for taking the original art of my friend Ken Probst On the home front: Thank you, Jennie and Nick Knapp,
and enhancing this book’s amazingly beautiful biological Elizabeth Bauman, Jeremy Bauman, Larry Latham, Josh Wood,
illustrations. My thanks to Lachina for rendering the art in this and Mike Isley. You keep me even-keeled. My wife Michelle
edition. Andrea Stefanowicz and Lumina Datamatics expertly deserves more recognition than I can possibly express: “Many
guided the project through production. Andrea, thank you are noble, but you excel them all.” Thank you.
for meticulously improving the text. Maureen “Mo” Spuhler
Robert W. Bauman
remains the most amazing photo researcher. I am in your debt,
Amarillo, Texas
“Molybdenum.” Rich Robison and Brent Selinger supplied
many of the text’s wonderful and unique micrographs. Emily
Friel created the beautiful interior design and the stunning
cover.
xvii
Table of Contents
1
Acids and Bases 36
Salts 38
Organic Macromolecules 38
A Brief Functional Groups 39
Lipids 40
History of Carbohydrates 42
Proteins 44
Microbiology 1 Nucleotides and Nucleic Acids 48
The Early Years of Chapter Summary 51 • Questions for Review 52
Microbiology 2 Critical Thinking 53 • Concept Mapping 54
What Does Life Really Look
Like? 2
3
How Can Microbes Be
Classified? 3
The Golden Age of Microbiology 7
Does Microbial Life Spontaneously Generate? 7
What Causes Fermentation? 10
Cell Structure and
What Causes Disease? 11
How Can We Prevent Infection and Disease? 15
Function 55
The Modern Age of Microbiology 18 Processes of Life 56
What Are the Basic Chemical Reactions of Life? 18 Prokaryotic and Eukaryotic
How Do Genes Work? 18 Cells: An Overview 57
What Roles Do Microorganisms Play in the Environment? 20 External Structures of Bacterial
How Do We Defend Against Disease? 20 Cells 59
What Will the Future Hold? 21 Glycocalyces 59
Chapter Summary 22 • Questions for Review 22
Flagella 59
Critical Thinking 24 • Concept Mapping 25 Fimbriae and Pili 62
Bacterial Cell Walls 63
2
Gram-Positive Bacterial Cell Walls 64
Gram-Negative Bacterial Cell Walls 66
Bacteria Without Cell Walls 66
Bacterial Cytoplasmic Membranes 66
The Chemistry of Structure 66
Microbiology 26 Function 67
Cytoplasm of Bacteria 72
Atoms 27 Cytosol 72
Atomic Structure 27 Inclusions 72
Isotopes 27 Endospores 73
Electron Configurations 28 Nonmembranous Organelles 74
Chemical Bonds 30 External Structures of Archaea 74
Nonpolar Covalent Bonds 30 Glycocalyces 75
Polar Covalent Bonds 31 Flagella 75
Ionic Bonds 32 Fimbriae and Hami 75
Hydrogen Bonds 33 Archaeal Cell Walls and Cytoplasmic Membranes 76
Chemical Reactions 34 Cytoplasm of Archaea 76
Synthesis Reactions 34
External Structure of Eukaryotic Cells 77
Decomposition Reactions 34
Exchange Reactions 35 Glycocalyces 77
Water, Acids, Bases, and Salts 35 Eukaryotic Cell Walls and Cytoplasmic Membranes 77
Water 35
xviii
Table of Contents xix
4
Light-Dependent Reactions 144
Light-Independent Reactions 145
Other Anabolic Pathways 148
Carbohydrate Biosynthesis 148
Microscopy, Lipid Biosynthesis 149
Staining, and Amino Acid Biosynthesis 149
Nucleotide Biosynthesis 150
Classification 94 Integration and Regulation of Metabolic Functions 151
5
Preserving Cultures 176
Growth of Microbial Populations 177
Generation Time 178
Microbial Mathematical Considerations in Population Growth 178
Phases of Microbial Population Growth 178
Metabolism 122 Continuous Culture in a Chemostat 180
Measuring Microbial Reproduction 180
Basic Chemical Reactions
Underlying Metabolism 123 Chapter Summary 185 • Questions for Review 187
Catabolism and Anabolism 123 Critical Thinking 188 • Concept Mapping 189
Oxidation and Reduction
Reactions 124
ATP Production and Energy
Storage 124
The Roles of Enzymes
in Metabolism 125
xx Table of Contents
11
Algae 366
Distribution of Algae 366
Morphology of Algae 366
Reproduction of Algae 366
Characterizing Classification of Algae 367
and Classifying Water Molds 369
Other Eukaryotes of Microbiological Interest: Parasitic
Prokaryotes 317 Helminths and Vectors 370
General Characteristics of Arachnids 370
Prokaryotic Organisms 318 Insects 370
Morphology of Prokaryotic Chapter Summary 372 • Questions for Review 373
Cells 318 Critical Thinking 375 • Concept Mapping 376
Endospores 318
Reproduction of Prokaryotic Cells 319
Arrangements of Prokaryotic Cells 320
Modern Prokaryotic Classification 322
Survey of Archaea 322
Extremophiles 323
Methanogens 325
xxii Table of Contents
13 Infection 411
Exposure to Microbes: Contamination and Infection
Portals of Entry 411
411
14
Defenses 440
The Body’s First Line of
Defense 440
Infection, The Role of Skin in Innate
Immunity 440
Infectious The Role of Mucous Membranes
in Innate Immunity 441
Diseases, and The Role of the Lacrimal Apparatus in Innate Immunity 442
The Role of Normal Microbiota in Innate Immunity 442
Epidemiology 405 Other First-Line Defenses 443
Symbiotic Relationships Between The Body’s Second Line of Defense 444
Microbes and Their Hosts 406 Defense Components of Blood 444
Types of Symbiosis 406 Phagocytosis 447
Normal Microbiota in Hosts 407 Nonphagocytic Killing 448
How Normal Microbiota Become Opportunistic Nonspecific Chemical Defenses Against Pathogens 449
Pathogens 408 Inflammation 454
Fever 457
Reservoirs of Infectious Diseases of Humans 410
Animal Reservoirs 410 Chapter Summary 459 • Questions for Review 460
Human Carriers 411 Critical Thinking 462 • Concept Mapping 463
Nonliving Reservoirs 411
Table of Contents xxiii
Immunity 464
Overview of Adaptive
Immunity 465
18
Elements of Adaptive
Immunity 466 Immune
The Tissues and Organs of the
Lymphatic System 466
Disorders 517
Antigens 468 Hypersensitivities 518
Preparation for an Adaptive Type I (Immediate)
Immune Response 469 Hypersensitivity 518
T Lymphocytes (T Cells) 471 Type II (Cytotoxic)
B Lymphocytes (B Cells) and Antibodies 474 Hypersensitivity 522
Immune Response Cytokines 480 Type III (Immune Complex–
Cell-Mediated Immune Responses 481 Mediated)
Activation of Cytotoxic T Cell Clones and Their Functions 481 Hypersensitivity 525
The Perforin-Granzyme Cytotoxic Pathway 483 Type IV (Delayed or Cell-Mediated) Hypersensitivity 527
The CD95 Cytotoxic Pathway 483 Autoimmune Diseases 531
Memory T Cells 483 Causes of Autoimmune Diseases 531
T Cell Regulation 484 Examples of Autoimmune Diseases 531
Antibody Immune Responses 484 Immunodeficiency Diseases 532
Inducement of T-Dependent Antibody Immunity with Clonal Primary Immunodeficiency Diseases 533
Selection 484 Acquired Immunodeficiency Diseases 533
Memory Cells and the Establishment of Immunological
Memory 486 Chapter Summary 534 • Questions for Review 535
Types of Acquired Immunity 487 Critical Thinking 537 • Concept Mapping 537
Naturally Acquired Active Immunity 487
Naturally Acquired Passive Immunity 487
Artificially Acquired Active Immunity 488
Artificially Acquired Passive Immunotherapy 488 19
• Questions for Review 491
Chapter Summary 490
Critical Thinking 493 • Concept Mapping 494 Pathogenic
Gram-Positive
Bacteria 538
17 Staphylococcus 539
Structure and
Immunization Physiology 539
Pathogenicity 539
and Immune Epidemiology 540
Testing 495 Staphylococcal
Diseases 541
Immunization 496 Diagnosis, Treatment,
Brief History of Immunization 496 and Prevention 542
Active Immunization 497 Streptococcus 543
Passive Immunotherapy 502 Group A Streptococcus: Streptococcus pyogenes 544
Serological Tests That Use Group B Streptococcus: Streptococcus agalactiae 548
Antigens and Corresponding Antibodies 503 Other Beta-Hemolytic Streptococci 549
Precipitation Tests 504 Alpha-Hemolytic Streptococci: The Viridans
Turbidimetric and Nephelometric Tests 505 Group 549
Agglutination Tests 505 Streptococcus pneumoniae 549
Neutralization Tests 506 Enterococcus 551
The Complement Fixation Test 507 Structure and Physiology 551
xxiv Table of Contents
21
Mycoplasmas 560
Mycoplasma pneumoniae 561
Other Mycoplasmas 564
Corynebacterium 564
Pathogenesis, Epidemiology, and Disease 565
Rickettsias,
Diagnosis, Treatment, and Prevention 565 Chlamydias,
Mycobacterium 565
Tuberculosis 566 Spirochetes,
Leprosy 566
Other Mycobacterial Infections 567 and Vibrios 611
Propionibacterium 570 Rickettsias 612
Nocardia and Actinomyces 572 Rickettsia 612
Nocardia asteroides 572 Orientia tsutsugamushi 613
Actinomyces 572 Ehrlichia and Anaplasma 616
Chlamydias 617
Chapter Summary 573 • Questions for Review 575 Chlamydia trachomatis 617
Critical Thinking 576 • Concept Mapping 577 Chlamydophila
pneumoniae 620
Chlamydophila psittaci 620
20 Spirochetes 620
Treponema 621
Borrelia 624
Pathogenic Leptospira 627
Pathogenic Gram-Negative Vibrios 628
Gram-Negative Vibrio 628
Cocci and Campylobacter jejuni 630
Helicobacter pylori 630
Bacilli 578 Chapter Summary 633 • Questions for Review 634
Pathogenic Gram-Negative Critical Thinking 636 • Concept Mapping 637
Cocci: Neisseria 579
Structure and Physiology of
Neisseria 579
The Gonococcus: Neisseria gonorrhoeae 580
The Meningococcus: Neisseria meningitidis 582
22
Pathogenic, Gram-Negative, Facultatively Anaerobic
Bacilli 583
Pathogenic
The Enterobacteriaceae: An Overview 583 Fungi 638
Coliform Opportunistic Enterobacteriaceae 586
Noncoliform Opportunistic Enterobacteriaceae 590 An Overview of Medical
Truly Pathogenic Enterobacteriaceae 591 Mycology 639
The Pasteurellaceae 595 The Epidemiology of
Mycoses 639
Pathogenic, Gram-Negative, Aerobic Bacilli 596
Categories of Fungal Agents:
Bartonella 597
True Fungal Pathogens and
Brucella 597
Opportunistic Fungi 639
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