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Higher Order Networks An Introduction To Simplicial Complexes 1st Edition Ginestra Bianconi Download

The document introduces higher-order networks and simplicial complexes, emphasizing their role in capturing complex interactions in systems like the brain and collaboration networks. It discusses the mathematical framework provided by simplicial complexes for understanding network topology and dynamics, including emergent geometry and higher-order dynamics. The text serves as an in-depth introduction to network theory, aimed at researchers and graduate students interested in the subject.

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100% found this document useful (10 votes)
72 views61 pages

Higher Order Networks An Introduction To Simplicial Complexes 1st Edition Ginestra Bianconi Download

The document introduces higher-order networks and simplicial complexes, emphasizing their role in capturing complex interactions in systems like the brain and collaboration networks. It discusses the mathematical framework provided by simplicial complexes for understanding network topology and dynamics, including emergent geometry and higher-order dynamics. The text serves as an in-depth introduction to network theory, aimed at researchers and graduate students interested in the subject.

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Bianconi
Higher-order networks describe the many-body interactions of
a large variety of complex systems ranging from the the brain
to collaboration networks. Simplicial complexes are generalized
network structures which allow us to capture the combinatorial
properties, the topology and the geometry of higher-order
networks. Having been used extensively in quantum gravity The Structure and Dynamics
to describe discrete or discretized space-time, simplicial
complexes have only recently become the representation of of Complex Networks
choice for capturing the underlying network topology and
geometry of complex systems.
This Element provides an in-depth introduction to the very
hot topic of network theory, covering a wide range of subjects
Higher-Order

Higher-Order Networks
ranging from emergent hyperbolic geometry and topological
data analysis to higher-order dynamics. This Element aims to
demonstrate that simplicial complexes provide a very general
mathematical framework to reveal how higher-order dynamics
Networks
depends on simplicial network topology and geometry.
An Introduction to
About the series Series editors
Simplicial Complexes
This cutting-edge new series provides Guido Caldarelli
authoritative and detailed coverage Ca’ Foscari
University of
Ginestra Bianconi
of the underlying theory of complex
networks, specifically their structure and Venice
dynamical properties. Each Element within

https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press


the series will focus upon one of three
primary topics: static networks, dynamical
networks and numerical/computing
network resources.

Cover image: jivacore/Shutterstock ISSN 2516-5763 (online)


ISSN 2516-5755 (print)
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press
Elements in the Structure and Dynamics of Complex Networks
edited by
Guido Caldarelli
Ca’ Foscari University of Venice

H I GH E R - O R D E R
NE T W O R KS
An Introduction to Simplicial Complexes

Ginestra Bianconi
Queen Mary University of London and The Alan
Turing Institute
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Information on this title: www.cambridge.org/9781108726733
DOI: 10.1017/9781108770996
© Ginestra Bianconi 2021
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and to the provisions of relevant collective licensing agreements,
no reproduction of any part may take place without the written
permission of Cambridge University Press.
First published 2021
A catalogue record for this publication is available from the British Library.
ISBN 978-1-108-72673-3 Paperback
ISSN 2516-5763 (online)
ISSN 2516-5755 (print)
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Cambridge University Press has no responsibility for the persistence or accuracy of


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accurate or appropriate.
Higher-Order Networks

An Introduction to Simplicial Complexes

Elements in the Structure and Dynamics of Complex Networks

DOI: 10.1017/9781108770996
First published online: November 2021

Ginestra Bianconi
Queen Mary University of London and The Alan Turing Institute
Author for correspondence: Ginestra Bianconi, [email protected]

Abstract: Higher-order networks describe the many-body interactions of a


large variety of complex systems ranging from the the brain to
collaboration networks. Simplicial complexes are generalized network
structures which allow us to capture the combinatorial properties, the
topology and the geometry of higher-order networks. Having been used
extensively in quantum gravity to describe discrete or discretized
space-time, simplicial complexes have only recently become the
representation of choice for capturing the underlying network topology
and geometry of complex systems.
This Element provides an in-depth introduction to the very hot topic of
network theory, covering a wide range of subjects ranging from emergent
hyperbolic geometry and topological data analysis to higher-order
dynamics. This Element aims to demonstrate that simplicial complexes
provide a very general mathematical framework to reveal how higher-order
dynamics depends on simplicial network topology and geometry.
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

Keywords: Higher-order networks, Simplicial complexes, Higher-order


dynamics, Simplicial network topology and geometry, Topological data analysis

© Ginestra Bianconi 2021


ISBNs: 9781108726733 (PB), 9781108770996 (OC)
ISSNs: 2516-5763 (online), 2516-5755 (print)
Contents

1 The Relevance of Higher-Order Networks


in Network Science 1

2 Combinatorial and Statistical Properties of Simplicial


Complexes 7

3 Simplicial Network Topology 30

4 Simplicial Network Geometry 46

5 Emergent Geometry 56

6 Higher-Order Dynamics: Synchronization 86

7 Higher-Order Dynamics: Percolation 99

8 Higher-Order Dynamics: Contagion Models 107

9 Outlook 113
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

Appendix A Maximum Entropy Ensembles of Simplicial


Complexes 115

Appendix B The Hodge Decomposition 119

Appendix C Spectral Dimension of Euclidean Lattices 121

Appendix D Topological Moves 123

Appendix E Emergent Preferential Attachment 125

Appendix F Generalized Degree Distributions of NGFs


(Neutral Model) 127

Appendix G Apollonian and Pseudo-Fractal Simplicial


Complexes 129

References 130
Higher-Order Networks 1

1 The Relevance of Higher-Order Networks


in Network Science
1.1 Simplicial Complexes as Generalized Network Structures
Network science [1–4] is routed on the idea that the complexity of interacting
systems can be captured by the network of interactions between their con-
stituents. This very powerful framework has enabled the scientific community
to make unprecedented progress in the understanding of complex systems rang-
ing from the brain to society. In the last 20 years, network theory has revealed
the rich interplay between the network topology and dynamics [3, 5]. It has been
shown that universal statistical properties of complex networks, such as the
scale-free degree distribution and the small-world nature of complex networks,
are responsible for the surprising dynamical properties that processes such as
percolation, epidemic spreading, Ising model and synchronization display in
these networks.
Recently, mounting evidence reveals that to make the next big leap for-
ward in understanding and predicting the behavior of complex networks it is
important to abandon the framework of a simple network formed exclusively
by pairwise interactions and use generalized network structures that can bet-
ter capture the richness of real data. Multilayer networks [6] are well-studied
generalized networks that are able to treat datasets in which interactions have
different nature and connotation displaying a rich interplay between struc-
ture and dynamics. More recently the research attention has been focusing on
higher-order networks [7–11] that allow capture of the many-body interactions
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

of complex systems going beyond the pairwise interaction framework.


Consider for example three regions of the brain. These three regions can be
correlated with each other pairwise via three two-body interactions or might
be related by a higher-order (three-body) interaction, revealed by the fact that
these three regions of the brain are typically activated at the same time. These
two scenarios correspond to very different dynamics that can be distinguished
only by considering higher-order networks. Indeed in the first case the higher-
order network between the three regions of the brain will include just three
links, while in the second case the three brain regions would form a three-
body interaction indicated by a filled triangle (also called a two-dimensional
simplex). In social networks a notable example of a higher-order network is
constituted by the set of face-to-face interactions at a party or during a cof-
fee break at a conference. In this context the people will form conversation
groups, often involving more than two individuals, in which ideas are shared
and elaborated in a way that is not reducible to a set of pairwise conversations.
2 The Structure and Dynamics of Complex Networks

Likewise in protein interaction networks proteins bind to each other forming


protein complexes typically including more than two different proteins. Only
when the protein complex is fully assembled is the protein complex able to
perform its biological task. This indicates that the biological function of the
protein complex is the result of many-body interactions between its constituent
proteins and cannot be reduced to a set of pairwise interactions.
Higher-order networks fully capture the interactions between two or more
nodes and are necessary to describe dynamical processes depending on many-
body interactions. In recent years this research field has boomed and important
new progress has been made to uncover the interplay between higher-order
structure and dynamics. In this work we aim to provide a brief introduction
to the subject that could be useful for graduate students and for researchers to
jump start into this lively research field.

1.2 Simplicial Complexes and Hypergraphs


When faced with the problem of capturing higher-order interactions existing
in a dataset, two generalized network structures are potentially useful for the
researcher: simplicial complexes and hypergraphs.
Both simplicial complexes and hypergraphs capture higher-order interac-
tions and are formed by a set of nodes v 2 f1; 2; 3 : : : ; Ng and a set of
many-body interactions including two or more nodes, such as

˛ D Œv0 ; v1 ; : : : ; vd ; (1.1)
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

with d  1. These many-body interactions are called simplices of a simplicial


complex or hyperedges of a hypergraph. These higher-order interactions induce
a very rich combinatorial structure for higher-order networks [12] that can also
have very relevant consequences for higher-order dynamics, including syn-
chronization and contagion processes [13, 14]. As both simplicial complexes
and hypergraphs capture the many-body interactions in a complex system, the
vast majority of many-body phenomena obtained in one framework can be
directly translated into the other framework.
The only difference between simplicial complexes and hypergraphs is a
subtle one: the set of simplices of a simplicial complex is closed under the
inclusion of subsets of the simplices in the set while no such constraint exists
for a hypergraph. This means that in a simplicial complex, if the simplex ˛
given by

Œv0 ; v1 ; v2 ; (1.2)

belongs to the simplicial complex, then the simplices


Higher-Order Networks 3

Œv0 ; v1 ; Œv0 ; v2 ; Œv1 ; v2 ; Œv0 ; Œv1 ; Œv2 ; (1.3)

must also belong to the simplicial complex. In other words, if we consider a


collaboration network in which three authors have written a paper together,
then we should include in the simplicial complex also the three pairwise inter-
actions between the authors and the set of the three isolated nodes. This might
look like an artificial constraint, but actually it comes with the great advantage
that simplicial complexes are natural topological spaces for which important
topological results exist. This widely developed branch of mathematics pro-
vides a powerful resource for extracting information and revealing the interplay
between topological and geometrical properties of higher-order networks and
their dynamics.
The scientific research on higher-order networks is currently growing and
many important results have been recently obtained in this field. In this Ele-
ment, our goal is to provide a self-contained, coherent and uniform account of
the results on higher-order networks. For space limitations we have chosen to
focus mostly on simplicial complexes. However, on a number of occasions we
will refer to results exclusively applying to hypergraphs.

1.3 A Topological Approach to Complex


Interacting Systems
A simplex characterizes an interaction between two or more nodes. The sim-
plices of a simplicial complex are glued to one another by sharing a subset of
their nodes, resulting in topological spaces. Topological spaces have a num-
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

ber of features, for instance they can be characterized not only by the number
of their connected components, like networks, but also by the number of their
higher-order cavities or holes indicated by their Betti numbers. Applied topol-
ogy [8, 15–19] studies the underlying topology (including the Betti numbers)
of simplicial complexes coming from real data. This field has been flourish-
ing in the last decades and was initially applied to extract information from
data-clouds coming from different sources of data including, for instance,
gene-expression. An important framework that has been developed in applied
topology is called persistent homology and is based on an operation called
filtration that aims at coarse-graining the data with different resolution char-
acterizing how long topological features persist. Only recently [20, 21] has this
approach been applied to real networked data and in particular to brain func-
tional networks, which are weighted networks in which the filtration procedure
is not simple coarse-graining, rather it is substituted with a change of thresh-
old in the weights of the links. Persistence homology of complex networks
is a powerful topological tool that makes extensive use of the simplicial rep-
resentation of data and has shown to reveal differences not accounted for by
4 The Structure and Dynamics of Complex Networks

other more traditional Network Science measures. However the possibility of


using persistence homology is by no means the only benefit of using topology
to analyze higher-order networks. In neuroscience [8, 22] the use of simpli-
cial complexes has been booming in recent years and novel results show the
rich interplay between topology and dynamics in the framework of the in-silico
reconstruction of rat brain cortex [23]. Moreover, simplicial topology can be
also used to investigate the local [24] and the meso-scale structure [25, 26] of
network data.
Departing from the benefit that topology can bring to higher-order data anal-
ysis, recently it has been shown that topology, and specifically Hodge theory,
can be exploited by higher-order networks for sustaining and synchronizing
higher-order topological signals, i.e. dynamical variables that are not only
defined on the nodes of the network, but rather like fluxes they can be defined
on links or even on higher-order structures like triangles or tetrahedra [27].
Interestingly topological signals are also attracting increasing attention from
the signal processing perspective [28].
This multifaceted research field clearly shows that topology is a fundamental
tool to investigate higher-order network structure and dynamics.

1.4 A Geometrical Approach to Higher-Order Networks


If the links of a simplicial complex are assigned a distance, simplices have
an automatic interpretation as geometrical objects, and can be understood as
nodes, links, triangles, tethrahedra, etc. In particular, in absence of other data
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

that can be used to assign a distance to each link, the network scientist can
always choose to assign the same distance to each link.
Since simplicial complexes describe discrete simplicial geometries, mod-
eling simplicial complexes opens the possibility to reveal the fundamental
mechanisms of emergent simplicial geometry.
The long-standing mathematical problem of emergent geometry originates in
the field of quantum gravity, but this field is also very significant for complex
systems such as brain networks. Emergent simplicial geometry refers to the
ability of non-equilibrium or equilibrium models to generate simplicial com-
plexes with notable geometric properties by using purely combinatorial rules
that make no explicit reference to the network geometry. For instance emergent
geometry models should be independent of any possible simplicial complex
embedding.
Recently a series of works [29–31] has proposed a theoretical framework
called Network Geometry with Flavor that captures the fundamental mechan-
ism of emergent hyperbolic geometry. This framework opens a new perspec-
tive into the long-standing problem of emergent geometry and has possible
Higher-Order Networks 5

implications ranging from quantum gravity to complex systems. Addition-


ally, this framework generates simplicial networks whose underlying network
structure displays all the statistical properties of complex networks including
scale-free degree distribution, high clustering coefficient, small-world diam-
eter and significant community structure. The resulting simplicial complexes
can reveal distinct geometrical features including a finite spectral dimension
[32, 33]. The spectral dimension [34] characterizes the slow relaxation of
diffusion processes to their equilibrium steady-state distribution, similarly to
what happens for finite-dimensional Euclidean networks. However, higher-
order networks with finite spectral dimensions might dramatically differ from
Euclidean networks. In fact a finite spectral dimension can co-exist with small-
world properties (including an infinite Hausdorff dimension) and a non-trivial
community structure. The intrinsic geometrical nature of simplicial complexes
with finite spectral dimensions can have a profound effect on dynamical pro-
cesses such as diffusion and synchronization [35, 36]. In particular, if the
spectral dimension dS is smaller than four, dS  4, it is not possible to observe
a synchronized phase of the Kuramoto dynamics and strong spatio-temporal
fluctuations are observed instead.
Hyperbolic simplicial geometry also has an important effect on percolation
processes. Indeed, percolation on hyperbolic simplicial complexes can dis-
play more than one transition and critical behavior at the emergence of the
extensive component that deviates from the standard second-order continu-
ous transition. Indeed discontinuous transitions or continuouss transitions with
non-trivial critical behavior can be found, depending on the geometry of the
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

higher-order network [37].

1.5 The Advantages of Using Simplicial Complexes and the


Outline of the Element Structure
Beside allowing a full topological analysis of higher-order networks, simplicial
complexes have the following two advantages: they capture the many-body
interactions of a complex system and they allow us to uncover the impor-
tant role that simplicial topology and simplicial geometry have in dynamics.
So far our understanding of the interaction between structure and dynamics
has focused on the combinatorial properties of networks (such as their degree
distribution) and some of their spectral properties [3, 5]. Study of the interplay
between higher-order networks starts to reveal a much richer picture summa-
rized in the diagram presented in Figure 1 in which discrete simplicial network
geometry and topology provides new clues to interpret higher-order dynamics.
This very innovative framework is emerging from recent research on higher-
order networks and has the potential to significantly change the way in which
6 The Structure and Dynamics of Complex Networks

Figure 1 The interplay between higher-order structure and dynamics is


mediated by the higher-order combinatorial and statistical properties
combined with simplicial network topology and geometry.

we investigate the interplay between structure and dynamics in complex sys-


tems. In this Element our goal is to provide the fundamental tools to understand
the current research in the field and to make the next steps in this wonderful
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

world of higher-order networks. The Element will introduce important aspects


of discrete topology and discrete geometry in a pedagogical way accessible
to the interdisciplinary audience of PhD students and researchers in network
science.
The Element is structured as follows: in Section 2 we will provide the mathe-
matical definitions of simplicial complexes and discuss their combinatorial and
statistical properties, covering generalized degrees and the maximum entropy
models of simplicial complexes; Section 3 will cover the basic elements of sim-
plicial network topology, ranging from Topological Data Analysis (TDA) of
simplicial complexes, to properties of the higher-order Laplacians; Section 4
is devoted to simplicial network geometry; Section 5 discusses models of
emergent geometry including Network Geometry with Flavor; Sections 6, 7,
8 discuss higher-order dynamics including synchronization, percolation and
contagion models; finally in Section 9 we provide concluding remarks. The
Appendices provide further useful details on the material presented in the main
body of this work.
Higher-Order Networks 7

Due to space limitations we have adopted a style that favors coherence of


narrative over providing an exhaustive review of all the papers on the sub-
ject. Therefore we regret that we have not been able to cover all the growing
literature on the subject.

2 Combinatorial and Statistical Properties of Simplicial


Complexes
2.1 Mathematical Definitions
2.1.1 Basic Properties of Simplicial Complexes and Hypergraphs

A network is a graph G D .V; E/ formed by a set of nodes V and a set of links E


that represent the elements of a complex system and their interactions, respec-
tively. Networks are ubiquitous and include systems as different as the WWW
(web graphs), infrastructures (such as airport networks or road networks) and
biological networks (such as the brain or the protein interaction network in the
cell). Networks are pivotal to capturing the architecture of complex systems;
however, they have the important limitation that they cannot be used to capture
the higher-order interactions. In order to encode for the many-body interactions
between the elements of a complex system, higher-order networks need to be
used. A powerful mathematical framework to describe higher-order networks
is provided by simplicial complexes. Simplicial complexes are formed by a set
of simplices. The simplices indicate the interactions existing between two or
more nodes and are defined as follows:
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

S
A d-dimensional simplex ˛ (also indicated as a d-simplex ˛) is formed by
a set of .d C 1/ interacting nodes

˛ D Œv0 ; v1 ; v2 : : : ; vd :

It describes a many-body interaction between the nodes.


It allows for a topological and a geometrical interpretation of the simplex.

For instance, a node is a 0-simplex, a link is a 1-simplex, a triangle is a


2-simplex a tetrahedron is a 3-simplex and so on (see Figure 2).

F
A face of a d-dimensional simplex ˛ is a simplex ˛ 0 formed by a proper
subset of nodes of the simplex, i.e. ˛ 0  ˛:
8 The Structure and Dynamics of Complex Networks

0-simplex 1-simplex 2-simplex 3-simplex


Figure 2 A 0-simplex is a node, a 1-simplex is a link, a 2-simplex is a
triangle, a 3-simplex is a tethrahedron and so on.
Source: Reprinted from [38] ©SISSA Medialab Srl. Reproduced by permission of IOP
Publishing. All rights reserved.

3-simplex

Faces

4 0-simplices 6 1-simplices 4 2-simplices


Figure 3 The faces of a 3-simplex (tetrahedron) are four 0-simplices (nodes),
six links (1-simplices) and four triangles (2-simplices).
Source: Reprinted from [38] ©SISSA Medialab Srl. Reproduced by permission of IOP
Publishing. All rights reserved.

For instance the faces of a 2-simplex Œv0 ; v1 ; v2  include three nodes Œv0 ,
Œv1 , Œv2  and three links Œv0 ; v1 ; Œv0 ; v2 ; Œv1 ; v2 . Similarly, in Figure 3 we
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

characterize the faces of a tetrahedron.


The simplices constitute the building blocks of simplicial complexes.

S
A simplicial complex K is formed by a set of simplices that is closed under
the inclusion of the faces of each simplex.
The dimension d of a simplicial complex is the largest dimension of its
simplices.

Simplicial complexes represent higher-order networks, which include interac-


tions between two or more nodes, described by simplices. In more stringent
mathematical terms a simplicial complex K is a a set of simplices that satisfy
the following two conditions:
Higher-Order Networks 9

(a) if a simplex ˛ belongs to the simplicial complex, i.e. ˛ 2 K, then any face
˛ 0 of the simplex ˛ is also included in the simplicial complex, i.e. if ˛ 0  ˛
then ˛ 0 2 K;
(b) given two simplices of the simplicial complex ˛ 2 K and ˛ 0 2 K then
either their intersection belongs to the simplicial complex, i.e. ˛ \ ˛ 0 2 K,
or their intersection is null, i.e. ˛ \ ˛ 0 D ;.

Here and in the future we will indicate with N the total number of nodes
in the simplicial complex and we will indicate with NŒm the total number
of m-dimensional simplices in the simplicial complex (note that NŒ0 D N).
Furthermore we will indicate with Qm .N/ the set of all possible and distinct
m-dimensional simplices that can be present in a simplicial complex K includ-
ing N nodes. With Sm .K/ we will indicate instead the set of all m-dimensional
simplices present in K.
Among the simplices of a simplicial complex, the facets play a very relevant
role.

F
A facet is a simplex of a simplicial complex that is not a face of any
other simplex. Therefore a simplicial complex is fully determined by the
sequence of its facets.

A very interesting class of simplicial complexes are pure simplicial com-


https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

plexes.

P
A pure d-dimensional simplicial complex is formed by a set of d-
dimensional simplices and their faces.
Therefore pure d-dimensional simplicial complexes admit as facets only
d-dimensional simplices.

This implies that pure d-dimensional simplicial complexes are formed exclu-
sively by gluing d-dimensional simplices along their faces. In Figure 4 we show
an example of simplicial complex that is pure and an example of a simplicial
complex that it is not pure.
An interesting question is whether it is possible to convert a simplicial com-
plex into a network and vice versa and how much information is lost/retained
10 The Structure and Dynamics of Complex Networks

Figure 4 An example of a 2-dimensional simplicial complex that is pure and


an example of a 2-dimensional simplicial complex that is not pure.

in the process. Given a simplicial complex it is always possible to extract a


network known as the 1-skeleton of the simplicial complex by considering
exclusively the nodes and links belonging to the simplicial complex. Con-
versely, given a network, it is possible to derive deterministically a simplicial
complex called the clique complex of the network. The clique complex is
obtained from a network by taking every .d C 1/-clique in a simplex of dimen-
sion d. The clique complex is a simplicial complex. In fact, if a simplex is
included in a clique complex, then all its subsimplices are also included. More-
over any two simplices of the clique complex have an intersection that is either
the null set or a simplex of the clique complex.
Hypergraphs are alternative representations of higher-order networks that
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can be used instead of simplicial complexes.

H
A hypergraph G D .V; EH / is defined by a set V of N nodes and a set EH of
hyperedges, where an .m C 1/-hyperedge indicates a set of m C 1 nodes

e D Œv0 ; v1 ; v2 ; : : : ; vm ;

with generic values of 1  m < N.


A hyperedge describes the many-body interaction between the nodes.

As mathematical objects simplicial complexes are distinct from hypergraphs,


the difference being that simplicial complexes include all the subsets of a
given simplex. From a network science perspective a given dataset includ-
ing higher-order interactions can be described either as a simplicial complex
Higher-Order Networks 11

or as a hypergraph. However, it might be argued that in a simplicial complex


description of a higher-order network dataset we can lose some information.
For instance a collaboration network is a good example of a hypergraph where
hyperedges correspond to the fact that the considered set of authors (nodes)
have published at least a paper together. In this context having a hyperedge
connecting three authors indicates that the three authors have co-authored at
least a paper together. However, the existence of this three-body interaction
does not imply that each scientist has also co-authored a two-author paper with
each other scientist in the trio. Therefore by using simplicial complexes to
model a collaboration network, we essentially retain only information about
the facets of the collaboration while losing detailed information about which
lower-dimensional simplex actually indicates a real collaboration. On the other
side simplicial complexes allow the use of the very powerful tools of simplicial
network topology and geometry that can be a game changer, revealing a much
richer interplay between network topology and geometry.
We really believe that it is important for the network scientist to use the
right tool for the right problem. It turns out that in many contexts relevant to
the network scientist the alternative representations (hypergraph and simplicial
complexes) are actually interchangeable. In the cases where they are not, it is
important to be able to understand the benefits of one or the other representation
and how the results obtained in one framework can be relevant to informing the
investigation using the alternative representation.
In this Element, as we want to introduce the reader to the wonderful world
of simplicial network topology and geometry, we will mostly cover sim-
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plicial complexes; however, results that apply to hypergraphs will also be


covered.

2.1.2 Cell Complexes

Cell complexes (or CW complexes where C stands for closure finite and W
stands for weak topology) are a generalization of simplicial complexes that
are not exclusively formed by simplices but instead can be formed by basic
building blocks called cells. Cells describe many-body interactions that are
weaker than those of simplicial complexes, and they have a 1-skeleton that
differs from a clique. This means that a square can be interpreted as a cell of
four-body interactions whose faces are just four links. This can be useful in
some situations such as social interaction networks where, for instance, a dis-
cussion group can be formed by four people not all having a pairwise social tie
with everybody else in the group, or in protein interactions networks where not
all the proteins of a protein complex bind pairwise to each other.
12 The Structure and Dynamics of Complex Networks

(a) (b) (c) (d) (e)


Figure 5 All the regular polytopes in d D 3 (Platonic solids): (a) tetrahedron,
(b) cube, (c) octahedron, (d) dodecahedron, (e) icosahedron.
Source: Reprinted from [32].

Mathematically, a d-dimensional cell is a d-dimensional convex polytope


and in general open d-dimensional cells are topological spaces homeomorphic
to an open ball. Therefore 0-dimensional cells are nodes and 1-dimensional
cells are links, and therefore do not differ from 0-dimensional and
1-dimensional simplices. However, 2-dimensional cells include m-polygons
such as triangles (2-dimensional simplices), squares, pentagons etc. Simi-
larly, 3-dimensional cells include the Platonic solids, such as tethrahedra
(3-dimensional simplices), cubes, octahedra, dodecahedra and icosahedra (see
Figure 5). Interestingly, in dimension d D 4 there are more regular polytopes
than in dimension d D 3 (being 6), but for any dimension d > 4 there are only
three types of regular (convex) polytopes: the simplex, the hypercube and the
orthoplex.
A cell complex KO has the following two properties:

(a) it is formed by a set of cells that is closure-finite, meaning that every cell
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is covered by a finite union of open cells;


(b) given two cells of the cell complex ˛ 2 KO and ˛ 0 2 KO then either their inter-
section belongs to the cell complex, i.e. ˛ \ ˛ 0 2 K,O or their intersection is
0
a null set, i.e. ˛ \ ˛ D ;.

In this Element we will discuss mostly the properties of simplicial com-


plexes; however, in a number of places we will refer to results applying to
more general cell complexes.

2.2 Generalized Degrees of Simplicial Complexes


A key local structural property of networks is the degree of the nodes. The
degree of a node characterizes only the local structure of the network around
the node – its number of interactions. However, the statistical properties
associated with the degree are important global properties of the network
that can significantly affect its global dynamics, as in the case of scale-free
degree distributions [1]. It is therefore natural to desire to extend the notion
Higher-Order Networks 13

Figure 6 A 2-dimensional simplicial complex is shown together with its


generalized degree sequences k2;0 and k2;1 of the nodes and links, respectively.

of degrees to simplicial complexes. The generalized degrees [12, 29, 39] are
the fundamental combinatorial properties describing the structure of simpli-
cial complexes. Interestingly, in a simplicial complex not only nodes, but also
links and higher-dimensional simplices can be associated with generalized
degrees.

G
The generalized degree [12, 29, 39] kd;m .˛/ of an m-dimensional sim-
plex ˛ indicates the number of d-dimensional simplices incident to the
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m-simplex ˛.

We note that k1;0 .Œr/ reduces to the degree of node r in the 1-skeleton of the
simplicial complex. In Figure 6 we show a 2-dimensional simplicial complex
together with the list of the generalized degrees k2;1 and k2;0 of its nodes and
links, respectively. Note that while the generalized degrees kd;m can be defined
for every pair of dimensions .d; m/ with d ¤ m, the generalized degrees with
d < m are trivial and do not depend on the simplicial complex structure, indeed
they characterize how many d-dimensional faces an m-dimensional simplex
has. Therefore, for d < m we have
!
mC1
kd;m .˛/ D ;
dC1

for every m-dimensional simplex of any simplicial complex. It follows that the
relevant generalized degrees kd;m .˛/ for describing the different structures of
14 The Structure and Dynamics of Complex Networks

simplicial complexes have d > m. The generalized degrees are of fundamental


importance for capturing the combinatorial and statistical properties of sim-
plicial complex data and of models of simplicial complexes. Interestingly, a
simplicial complex can display very different generalized degree distributions
kd;m if one considers different dimensions m, as we will demonstrate in the
case of the model Network Geometry with Flavor (see Section 5.3). The gen-
eralized degrees can be also used to determine the combinatorial conditions for
observing a discrete manifold (see Section 4.1). They are therefore an impor-
tant combinatorial aspect of simplicial complexes that is related to their discrete
network geometry.
In addition to generalized degrees, another useful statistical property of
simplicial complexes is the distribution of the size of their facets. For exam-
ple, in the collaboration network this captures the distribution of the largest
collaborations involving a set of authors [40].

2.3 Pure Simplicial Complexes and Their Tensorial


Representation
Pure d-dimensional simplicial complexes have a structure that can be fully
captured by a .d C 1/-dimensional tensor aŒd called an adjacency tensor.
The adjacency tensor aŒd has elements aŒd
˛ 2 f0; 1g indicating, for each
possible d-dimensional simplex ˛ 2 Qd .N/, if the simplex is present (a˛ D 1)
or absent (a˛ D 0) in the simplicial complex K, i.e.
(
Œd 1 if ˛ 2 Sd .K/;
a˛ D (2.1)
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0 otherwise:

The adjacency matrix tensor is symmetric under the permutation of the order of
the nodes in the simplices, for instance, if in a 2-dimensional simplical complex
Œ2
we have arsq D aŒ2 Œ2
sqr D asrq and so on for each possible permutation of the three
indices forming the simplex ˛ D Œr; s; q.

2.4 Generalized Degrees of Pure Simplicial Complexes


2.4.1 General Properties
The generalized degrees kd;m .˛/ of a pure d-dimensional simplicial complex
can be defined in terms of the adjacency tensor aŒd as
X
kd;m .˛/ D aŒd
˛0 : (2.2)
˛ 0 2Qd .N/j˛ 0 ˛

The generalized degrees obey a nice combinatorial relation as they are not inde-
pendent of each other. In fact, the generalized degree of an m-face ˛ is related to
Higher-Order Networks 15

the generalized degree of the m0 -dimensional faces incident to it, with m0 > m,
by the simple combinatorial relation
1 X
kd;m .˛/ D ! kd;m0 .˛ 0 /: (2.3)
d m ˛ 0 2Qd .N/j˛ 0 ˛
m0 m
!
dC1
Moreover, since every d-dimensional simplex belongs to
mC1
m-dimensional faces, in a simplicial complex with M d-dimensional simplices
we have
!
X dC1
kd;m .˛/ D M: (2.4)
mC1
˛2Sm .K/

2.4.2 Case of a Simplicial Complex of Dimension d D 1

Simplicial complexes of dimension d D 1 are networks and therefore are


formed exclusively by nodes and links. The adjacency tensor of the
1-dimensional simplicial complex reduces to the adjacency matrix aŒ1 (also
indicated as A), whose elements aŒ1rs (or Ars ) indicate whether the link Œr; s is
present or not in the network. In this case, the generalized degree k1;0 .Œr/ of a
node r simply indicates its degree (also indicated as kr ), i.e. the number of links
incident to it,
N
X
k1;0 .Œr/ D aŒ1
rs : (2.5)
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sD1

2.4.3 Case of a Simplicial Complex of Dimension d D 2

Pure simplicial complexes of dimension d D 2 are formed exclusively by a set


of triangles and their faces (nodes and links). A 2-dimensional pure simplicial
complex is determined by the adjacency tensor aŒ2 of elements aŒ2
rsq D 1 if the
triangle ˛ D Œr; s; q belongs to the simplicial complex and aŒ2
rsq D 0 if it does
not belong to the simplicial complex. The generalized degree k2;0 .Œr/ of node
r is given by
X
k2;0 .Œr/ D aŒ2
rsq ; (2.6)
s<q

while the generalized degree k2;1 .Œr; s/ of a link ˛ D Œr; s is given by
N
X
k2;1 .Œr; s/ D aŒ2
rsq : (2.7)
qD1
16 The Structure and Dynamics of Complex Networks

The generalized degree k2;0 .Œr/ of node r indicates the number of triangles
incident to it, while the generalized degree k2;1 .Œr; s/ of the link Œr; s indicates
the number of triangles incident to the link. The generalized degree of the nodes
is related to the generalized degree of the links. In fact it is easy to see that

X N
1 X Œ2 1X
k2;0 .Œr/ D aŒ2
rsq D arsq D k2;1 .Œr; s/: (2.8)
s<q
2 s;q 2 sD1

Since each triangle is incident to three nodes, we have


N
X
k2;0 .Œr/ D 3M; (2.9)
rD1

where M is the number of 2-dimensional simplices in the simplicial complex.

2.5 Clique Complexes of Random Uncorrelated Networks


Clique complexes are a simple way to generate simplicial complexes starting
from network data. As network data is currently more abundant than higher-
order network data, it is important to investigate here the properties of the
clique complexes of the most simple models of networks, i.e. random uncorre-
lated networks. Random uncorrelated networks are sparse networks, indicating
that the number of links scales as the number of nodes in the network. More-
over, random uncorrelated networks are random networks with a given degree
sequence, as long at the degrees of the network have a structural cutoff. The
structural cutoff imposes that all the degrees of the network should be much
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lower than the structural cutoff, i.e.


p
kr  K D hkiN; (2.10)

for all nodes r 2 f1; 2; : : :g, where here hki indicates the average degree of
the network. In this limit the maximum entropy network ensemble enforc-
ing the given degree sequence describes a null model in which there are no
degree–degree correlations, i.e. the degree of the node at one end of a link is
not correlated with the degree of the node at the other end of the link.
If one performs the clique complex of this ensemble, every .d C 1/-clique
is reduced to a d-dimensional simplex of the clique complex. For Erdös–Rényi
graphs in which the number of links L scales as the number of nodes N (Pois-
son networks), the expected number of cliques of size greater than 3 is null in
the large N limit, implying that the clique complex is at most 2-dimensional
[41]. However, the situation changes significantly if one considers an uncorre-
lated network with power-law degree distribution P.k/ D Ck and exponent
Higher-Order Networks 17

2 .2; 3/ [42]. Indeed, in this case the expected number Nd of d-simplices in


the clique complex of the network scales, as long as d > 1, as

Nd D O.N  / (2.11)

with
1
D .d C 1/.d C 1 /; (2.12)
2
so it is diverging in the large network limit N ! 1. For D 3, a logarithmic
scaling is observed:

Nd D O..ln N/dC1 /: (2.13)

Moreover, and even more surprisingly, the clique number of the random scale-
free network diverges [42], i.e. the size of the largest clique of the network
skeleton of the simplicial complex diverges with N ! 1 for 2 .2; 3. This
implies that in a clique complex of a random uncorrelated scale-free network,
the dimension of the largest facet diverges. This phenomenon is due to the
fact that uncorrelated scale-free networks display a hierarchical structure (also
revealed by their core structure) and it becomes easier for nodes of high degrees
to form cliques.
It follows that if we consider the clique complex of a network with broad
degree distribution, and also if the network is sparse, we expect that the dimen-
sion of the obtained simplicial complex is significantly large. Therefore the
clique complex of a network with broad degree distribution is expected to have
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very significant differences with respect to the clique complex of a Poisson


network with the same average degree.

2.6 Maximum Entropy Ensembles of Simplicial Complex


2.6.1 Microcanonical and Canonical Ensembles
of Simplicial Complexes
A combination of combinatorial and statistical arguments are at the very heart
of information theory of simplicial complexes. This theory has the aim to pro-
vide null models of simplicial complexes that are the least biased given a set
of constraints [12]. These models are obtained using the Maximum Entropy
Principle, which is one of the pillars of information theory [6, 43, 44]. First
of all we consider an ensemble of simplicial complexes, formed by assigning
a probability P.K/ to every simplicial complex K belonging to the set K of
all possible simplicial complexes. The entropy of the ensemble of simplicial
complexes is given by
18 The Structure and Dynamics of Complex Networks
X
SD P.K/ ln P.K/; (2.14)
K2K

where we use the standard convention that if P.K/ D 0, then we take


P.K/ ln P.K/ D 0 ln 0 D 0. The entropy of the ensemble of simplicial com-
plexes characterizes the logarithm of the typical number of simplices in the
ensemble.
According to the Maximum Entropy Principle, the least-biased ensemble is
one satisfying a given set of constraints, characterized by a probability P.K/
that can be obtained by maximizing the entropy S, given the constraints. The
entropy of maximum-entropy simplicial complexes is a fundamental informa-
tion theory measure that can be used to quantify the information content of the
constraints. In fact constraints that carry a high information content are more
difficult to satisfy by a random simplicial complex and correspond to a smaller
entropy of the ensemble. On the other hand, constraints that do not limit the
structure of simplicial complexes much are more easy to satisfy and correspond
to a higher value of entropy.
Recently [12, 45], it has been shown that maximum-entropy models of net-
works and generalized network structures can be constructed using an analogy
with statistical mechanics. In statistical mechanics [46] a distinction is made
between canonical and microcanonical ensembles, which consider configura-
tions of a dynamical system that are compatible with a given value of the energy
and with a given expected value of the energy. Similarly, when constructing
ensembles of networks or of simplicial complexes, we can consider ensem-
bles with a given set of hard constraints (satisfied in any single instance) or a
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given set of soft constraints (satisfied on average over all the instances of the
ensemble).
For simplicial complex ensembles we can consider a given set of observ-
O which might indicate, for instance, the total
ables F .K/ with  D 1; 2; : : : P,
number of d-dimensional simplices or the generalized degree of a node in a
pure d-dimensional simplicial complex. From these observables it is possible
to consider a set of hard constraints given by

F .K/ D C ; (2.15)

which needs to be satisfied for every simplicial complex K represented in the


ensemble, i.e. for every simplicial complex K having non-zero probability in
the ensemble. Alternatively, it is possible to consider a set of soft constraints
that enforce limits on average on the ensemble, i.e.
X
P.K/F .K/ D C N : (2.16)
K
Higher-Order Networks 19

Hard and soft constraints corresponding to the same choice of observables


F .K/ and having C D CN  are called conjugated constraints. The maxi-
mum entropy ensembles satisfying the soft constraints are called canonical
ensembles and are characterized by a probability PC .K/ that follows a Gibbs
distribution and is therefore given by (see Appendix A for details of the
derivation)
1 PPO
 F .K/
PC .K/ D e D1 ; (2.17)
ZC
where the parameters  are the Lagrangian multipliers enforcing the con-
straints and are fixed by imposing Eq. (2.16), while ZC is a normalization
constant also called the partition function. The maximum-entropy ensembles
satisfying the hard constraints are called microcanonical ensembles and are
characterized by a probability PM .K/ that is uniform over all the simplicial
complexes satisfying the hard constraints (see Appendix A for details of the
derivation), i.e.
PO
1 Y
PM .K/ D ı.C ; F .K//; (2.18)
ZM D1

where here and in the following ı.x; y/ indicates the Kronecker delta, with
ı.x; y/ D 1 if x D y and otherwise ı.x; y/ D 0, and where ZM indicates the num-
ber N of simplicial complexes satisfying the hard constraints, i.e. ZM D N . The
entropy † of the microcanonical ensemble is therefore given by the logarithm
of the number of simplicial complexes in the ensemble,
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† D ln N : (2.19)

Canonical and microcanonical ensembles satisfying conjugated constraints are


conjugated ensembles. If we indicate with S the entropy of the canonical ensem-
ble and with † the entropy of the conjugated microcanonical ensemble we have
[12, 47]

†DS O
; (2.20)
O is defined (see Appedix A for details of the derivation) as
where 
2 3
X YPO
O D ln 4
 PC .K/ ı.C ; F .K//5 : (2.21)
K2K D1

Therefore  O is a measure of how much the canonical ensemble deviates from


the microcanonical ensemble. In fact,  O gives the absolute value of the loga-
rithm of the probability that in the canonical ensemble the hard constraints are
satisfied. If O is subextensive, i.e. 
O D o.N/, then the conjugated ensembles
20 The Structure and Dynamics of Complex Networks

are statistically equivalent, meaning that they have the same statistical proper-
ties in the limit of large simplicial complexes, i.e. N ! 1. Conversely, if  O is
extensive, i.e. O D O.N/ then the two ensembles are not statistically equiva-
lent [12, 47]. In simplicial complexes, as in networks, this latter scenario occurs
in cases in which we fix an extensive number of constraints, i.e. a number of
constraints PO that is proportional to N [12]. This includes, for instance, the case
in which we impose the expected generalized degree sequence of the nodes.

2.6.2 Canonical Ensemble of Simplicial Complexes with Given


Generalized Degree Sequence of the Nodes

Maximum-entropy simplicial complexes can be used to define simplicial com-


plex models that are the higher-order equivalent of Erdös and Rényi random
graphs [48, 49]. Here we focus on ensembles that capture the heterogeneities
present in simplicial complexes and that are most useful to the network sci-
entist. Specifically we consider canonical ensembles of pure d-dimensional
simplicial complexes with given expected generalized degree sequences of the
nodes fkN d;0 .Œr/g first studied in Ref. [12]. We identify every pure (labelled) sim-
plicial complex with its adjacency tensor aŒd indicated simply as a for a more
concise notation. The maximum entropy ensemble of simplicial complexes is
determined when we know the probability P.K/ D P.a/ of every simplicial
complex K with adjacency tensor a.
We can find P.a/ of the canonical ensembles of pure d-dimensional simpli-
cial complexes with given expected generalized degree sequences of the nodes
fkN d;0 .Œr/g by maximizing the entropy S under the constraints
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X
P.a/Fr .a/ D kN d;0 .Œr/; (2.22)
a

where Fr .a/ is given by


X
Fr .a/ D ari1 i2 ;i3 :::id (2.23)
i1 <i2 <:::<id

and where kN d;0 .Œr/ indicates the expected number of d-dimensional simplices
incident to each node r 2 f1; 2; : : : ; Ng.
We will consider here exclusively the sparse regime, which is relevant for
most of the applications of complex networks, in which the number of sim-
plices M is of the same order of magnitude as the number of nodes M / N:
˝ ˛
In this limit the average expected generalized degree kN d;0 .Œr/ is independent
of the network size. The maximum entropy distribution P.a/ obeys the Gibbs
measure given by Eq. (2.17) corresponding to the choice of constraints given
P
by Eqs. (2.22)–(2.23). The marginal probability p˛ D K2K a˛ P.K/ of a
Higher-Order Networks 21

d-dimensional simplex ˛ indicates the probability that the simplex belongs to


the simplicial complex and is given by
P
r
e r˛
p˛ D P
r
: (2.24)
1Ce r˛

Note that the constraints of the ensemble can be expressed simply in terms of
these marginals, implying that the equations that the Lagrangian multipliers
fr g need to satisfy are
P
X X e s˛ s
kN d;0 .Œr/ D p˛ D P
s
: (2.25)
1Ce s˛
˛jr˛ ˛jr˛

The expression (Eq.(2.24)) for the marginal probability p˛ reduces for d D 1 to


the known marginal probability prs of a link ˛ D Œr; s in the canonical network
ensemble

e r s
prs D : (2.26)
1 C e r s

For d D 2, instead the marginal probability prsq of a triangle ˛ D Œr; s; q reads

e r s q
prsq D : (2.27)
1 C e r s q

The fact that in general these marginal probabilities do not factorize into fac-
tors depending exclusively on a single node of the simplex indicates that the
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ensemble of simplicial complexes displays natural generalized degree–degree


correlations. These natural correlations are induced among the generalized
degrees of the nodes connected by a simplex and they are the higher-order
counterpart of the natural correlations that are well known to exist in maximum-
entropy ensembles of networks with a given expected degree distribution. A
study of generalized degree–degree correlations in the canonical ensemble
of simplicial complexes (see Ref. [12]) reveals that the simplicial correla-
tions found in these ensembles are more pronounced than in the ensemble of
networks (simplicial complexes of dimension d D 1).
In the presence of the structural cutoff, K, i.e., when the generalized degree
of the nodes obey

˝ ˛ d !1=.dC1/
kN d;0 .Œr/ N
kN d;0 .Œr/  K D ; (2.28)

22 The Structure and Dynamics of Complex Networks

the marginal p˛ factorizes and becomes proportional to the product of the


expected generalized degree of its nodes [12], i.e.
Q
kN d;0 .Œr/
p˛ D dŠ r˛ d : (2.29)
hkN d;0 .Œr/iN

This implies that in this limit the generalized degree–degree correlations van-
ish and we can consider the canonical ensemble of simplicial complexes null
models of uncorrelated simplicial complexes. This expression for the marginal
probability is very useful for studying dynamical processes on simplicial com-
plexes. For d D 1 the expression of the uncorrelated marginal probability prs
of a link ˛ D Œr; s reduces to the well-known expression

kN 1;0 .Œr/kN 1;0 .Œs/


prs D  : (2.30)
hkN 1;0 .Œr/iN

However, for d D 2 the uncorrelated marginal probability prsq of a triangle ˛ D


Œr; s; q reads

kN 2;0 .Œr/kN 2;0 .Œs/kN 2;0 .Œq/


prsq D 2 ˝ ˛ 2 : (2.31)
kN 2;0 .Œr/ N

The entropy of the canonical ensemble of simplicial complexes has a very sim-
ple expression due to the fact that the constraint enforcing given generalized
degrees of the nodes is linear in the adjacency tensor. Indeed we have that the
entropy S of the ensemble is fully determined by the marginals p˛ and is given
by
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X
SD Œp˛ ln p˛ C .1 p˛ / ln.1 p˛ /: (2.32)
˛2Qd .N/

Similarly, the probability distribution of the full simplicial complex can be


expressed in terms of the marginal probabilities as
Y
P.a/ D pa˛˛ .1 p˛ /1 a˛ : (2.33)
˛2Qd .N/

The simplicial complexes in the canonical ensemble can be generated very


simply according to the following algorithm:

(1) The marginal probabilities p˛ are calculated for each possible d-


dimensional simplex ˛ of the simplicial complex by solving Eq. (2.25).
(2) Each possible simplex ˛ 2 Qd .N/ of a simplicial complex formed by N
nodes is included in the simplicial complex, together with all its faces, with
probability p˛ .
Higher-Order Networks 23

2.6.3 Configuration Model of Simplicial Complexes

The configuration model of simplicial complexes [12] is the maximum-entropy


microcanonical ensemble of simplicial complexes having a given sequence
of generalized degrees of the nodes fkd;0 .Œr/grD1;2;:::;N : The probability P.K/
is therefore uniform over all simplicial complexes having the same sequence
of generalized degrees of the nodes. The partition function ZM indicates the
number of distinct simplicial complexes having the same generalized degree
sequence of the nodes.
Having defined the configuration model of simplicial complexes, one impor-
tant problem is the formulation of an actual algorithm for generating simplicial
complexes belonging to this ensemble. This algorithm builds on the represen-
tation of the simplicial complex in terms of a factor graph, i.e. a bipartite graph
formed by nodes, and factor nodes (representing d-dimensional simplices, for
instance triangles). The algorithm, schematically represented in Figure 7, is
defined as follows:

 Starting from a set of N nodes, to each node r a set of kd;0 .Œr/ stubs is
assigned.
 The stubs are matched to auxiliary factor nodes of degree d C 1.
 The obtained factor graph is converted into a simplicial complex. Every set
of .d C 1/ nodes incident to the same factor node of the factor graph corre-
sponds, in the simplicial complex, to a d-dimensional simplex formed by the
same set of nodes.
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

The matching of the stubs needs to be done randomly; however, some matches
are not permitted and if they occur the algorithm needs to be rerun from scratch.
The illegal matchings (see Figure 8 for a schematic description) are: matches
in which the same set of nodes are matched to more than one factor node or
matches in which the same factor node is matched to more than one stub inci-
dent to the same node. The code for the configuration model of a simplicial
complex is available in the repository [50]. From the algorithm generating sin-
gle instances of the simplicial networks in the configuration model we deduce
two main conclusions:

 Given the generalized degree of the nodes there are, in general, multiple ways
to realize the simplicial complex.
 The information encoded in the constraints is captured by the entropy †
of the ensemble, which is given by the logarithm of the number N of
simplicial complexes that realize a given generalized degree of the nodes,
i.e. † D ln N .
24 The Structure and Dynamics of Complex Networks

Figure 7 Schematic representation of the algorithm generating single


instances of the configuration model of simplicial complexes. Panel (a): each
node of the simplicial complex is assigned a number kd;0 .r/ of stubs. Panels
(b) and (c): stubs are matched to factor nodes of degree d C 1, and the factor
graph is converted into a simplicial complex. It is evident that with this
algorithm, different simplicial complexes with the same generalized degree
sequence of the nodes can be generated (such as the different simplicial
complexes shown in panel (b) and panel (c)).
https://doi.org/10.1017/9781108770996 Published online by Cambridge University Press

Source: Reprinted figure with permission from [12] ©Copyright (2016) by the
American Physical Society.

The entropy † of the configuration model is related to the entropy S of the


conjugated canonical ensemble of simplicial complexes with a given expected
O is given by [12]
generalized degree of the nodes by Eq. (2.20), where 

N
" #
X .kd;0 .Œr//kd;0 .Œr/
O D kd;0 .Œr/
 ln e ;
rD1
kd;0 .Œr/Š

as long as the simplicial complex displays the structural cutoff given by Eq.
(2.28). From this expression it is possible to deduce the asymptotic number N
of simplicial complexes with a given generalized degree of the nodes, which is
given by [12]
Exploring the Variety of Random
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