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Bacteriophage Ecology Population Growth Evolution and
Impact of Bacterial Viruses 1st Edition Stephen T.
Abedon Digital Instant Download
Author(s): Stephen T. Abedon
ISBN(s): 9780521858458, 0511397100
Edition: 1
File Details: PDF, 3.04 MB
Year: 2008
Language: english
This page intentionally left blank
Bacteriophage Ecology
Population Growth, Evolution, and Impact of Bacterial Viruses

Bacteriophages, or phages, are viruses that infect bacteria, and are believed
to be the most abundant and most genetically diverse organisms on Earth.
As such, their ecology is vast both in quantitative and qualitative terms.
Their abundance, and their impact on bacteria, makes an understanding
of phage ecology increasingly relevant to bacterial ecosystem ecology, bac-
terial genomics, and bacterial pathology. This volume is the first on phage
ecology in over 20 years. Written by leading experts, it seeks to synthesize
three key approaches toward studying phage ecology, namely determination
of natural (in situ) phage abundance and diversity; experimentation in the lab-
oratory as well as in situ experimentation on the dynamics of phage–phage,
phage–bacterium, and phage–ecosystem interactions; and the development,
using mathematical and computer models, of ecological and evolutionary
theory based on phage populations and phage-containing bacterial commu-
nities. With strong emphasis on microbial population biology, and by dis-
tilling cutting-edge research into basic principles, this book will serve as an
essential resource for graduate students and researchers, particularly those
with an interest in phage ecology or phage evolutionary biology.

STEPHEN T. ABEDON is Associate Professor of Microbiology at the Ohio State

University. He contributed to the editing of The Bacteriophages (2006) and
founded the Bacteriophage Ecology Group at www.phage.org to encour-
age collaboration and to provide a central resource for the bacteriophage
community.
Published titles

1. Bacterial Adhesion to Host Tissues. Edited by Michael Wilson 0521801079

2. Bacterial Evasion of Host Immune Responses. Edited by Brian Henderson
and Petra Oyston 0521801737
3. Dormancy in Microbial Diseases. Edited by Anthony Coates 0521809401
4. Susceptibility to Infectious Diseases. Edited by Richard Bellamy
0521815258
5. Bacterial Invasion of Host Cells. Edited by Richard Lamont 0521809541
6. Mammalian Host Defense Peptides. Edited by Deirdre Devine and Robert
Hancock 0521822203
7. Bacterial Protein Toxins. Edited by Alistair Lax 052182091X
8. The Dynamic Bacterial Genome. Edited by Peter Mullany 0521821576
9. Salmonella Infections. Edited by Pietro Mastroeni and Duncan Maskell
0521835046
10. The Influence of Cooperative Bacteria on Animal Host Biology. Edited by
Margaret J. McFall Ngai, Brian Henderson and Edward Ruby
0521834651
11. Bacterial Cell-to-Cell Communication. Edited by Donald R. Demuth and
Richard Lamont 0521846382
12. Phagocytosis of Bacteria and Bacterial Pathogenicity. Edited by Joel Ernst
and Olle Stendahl 0521845696
13. Bacterial-Epithelial Cell Cross-Talk: Molecular Mechanisms in
Pathogenesis. Edited by Beth A. McCormick 0521852447
14. Dendritic Cell Interactions with Bacteria. Edited by Maria Rescigno
9780521855860
 Over the past decade, the rapid development of an array of techniques in
the fields of cellular and molecular biology has transformed whole areas of
research across the biological sciences. Microbiology has perhaps been influ-
enced most of all. Our understanding of microbial diversity and evolutionary
biology and of how pathogenic bacteria and viruses interact with their animal
and plant hosts at the molecular level, for example, has been revolution-
ized. Perhaps the most exciting recent advance in microbiology has been the
development of the interface discipline of Cellular Microbiology, a fusion of
classical microbiology, microbial molecular biology and eukaryotic cellular
and molecular biology. Cellular Microbiology is revealing how pathogenic
bacteria interact with host cells in what is turning out to be a complex evo-
lutionary battle of competing gene products. Molecular and cellular biology
CELLULAR MICROBIOLOGY

are no longer discrete subject areas but vital tools and an integrated part
of current microbiological research. As part of this revolution in molecular
biology, the genomes of a growing number of pathogenic and model bac-
teria have been fully sequenced, with immense implications for our future
understanding of microorganisms at the molecular level.
Advances in Molecular and Cellular Microbiology is a series edited by
researchers active in these exciting and rapidly expanding fields. Each volume
will focus on a particular aspect of cellular or molecular microbiology and
will provide an overview of the area; it will also examine current research.
This series will enable graduate students and researchers to keep up with the
rapidly diversifying literature in current microbiological research.

AMCM n
ADVANCES IN MOLECULAR AND

Series Editors

Professor Brian Henderson

University College London

Professor Michael Wilson

University College London

Professor Sir Anthony Coates

St George’s Hospital Medical School, London

Professor Michael Curtis

St Bartholomew’s and Royal London Hospital, London
Advances in Molecular and Cellular Microbiology 15

Bacteriophage Ecology
Population Growth, Evolution, and Impact
of Bacterial Viruses

EDITED BY
STEPHEN T. ABEDON
The Ohio State University
CAMBRIDGE UNIVERSITY PRESS
Cambridge, New York, Melbourne, Madrid, Cape Town, Singapore, São Paulo

Cambridge University Press

The Edinburgh Building, Cambridge CB2 8RU, UK
Published in the United States of America by Cambridge University Press, New York
www.cambridge.org
Information on this title: www.cambridge.org/9780521858458

© Cambridge University Press 2008

This publication is in copyright. Subject to statutory exception and to the provision of

relevant collective licensing agreements, no reproduction of any part may take place
without the written permission of Cambridge University Press.
First published in print format 2008

ISBN-13 978-0-511-39710-3 eBook (NetLibrary)

ISBN-13 978-0-521-85845-8 hardback

Cambridge University Press has no responsibility for the persistence or accuracy of urls
for external or third-party internet websites referred to in this publication, and does not
guarantee that any content on such websites is, or will remain, accurate or appropriate.
Contents


vii

About the cover page ix

List of contributors xi
Foreword by Bruce R. Levin xiv
Preface xvii

1 Phages, ecology, evolution 1

Stephen T. Abedon

Part I Phage ecology

2 Bacteriophages: models for exploring basic principles of

ecology 31
Benjamin Kerr, Jevin West, and Brendan J. M. Bohannan

3 Phage population growth: constraints, games, adaptation 64

Stephen T. Abedon

4 Impact of spatial structure on phage population growth 94

Stephen T. Abedon and John Yin

5 Contribution of lysogeny, pseudolysogeny, and starvation to

phage ecology 114
Robert V. Miller and Martin J. Day

Part II Phage evolutionary biology

6 Phage evolutionary biology 147

Siobain Duffy and Paul E. Turner
 7 Phage evolution 177
Roger W. Hendrix

8 Evolutionary ecology of multiple phage adsorption and

infection 195
Paul E. Turner and Siobain Duffy

9 Patterns in phage experimental adaptation 217

J. J. Bull

Part III Phage ecology in environments


viii
10 Aquatic phage ecology
T. Frede Thingstad, Gunnar Bratbak, and Mikal Heldal
251

11 Phage ecology of terrestrial environments 281

contents

Martin J. Day and Robert V. Miller

12 Phages, bacteria, and food 302

Lawrence D. Goodridge

13 Interaction of bacteriophages with animals 332

Carl R. Merril

14 Phage ecology of bacterial pathogenesis 353

Paul Hyman and Stephen T. Abedon

Part IV Modeling phage ecology

15 Modeling bacteriophage population growth 389

David Stopar and Stephen T. Abedon

16 Modeling phage plaque growth 415

Stephen M. Krone and Stephen T. Abedon

17 Modeling of bacteriophage therapy 439

Jason J. Gill

Index 465

Color plate section appears between pages 46 and 47.

Other documents randomly have
different content
 Physical Education - Term Paper
Spring 2021 - Division

Prepared by: Teacher Garcia

Date: August 12, 2025

Unit 1: Theoretical framework and methodology

Learning Objective 1: Fundamental concepts and principles
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 1: Diagram/Chart/Graph]
Learning Objective 2: Practical applications and examples
• Learning outcomes and objectives
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Learning Objective 3: Key terms and definitions
• Comparative analysis and synthesis
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Learning Objective 4: Fundamental concepts and principles
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Learning Objective 5: Comparative analysis and synthesis
• Case studies and real-world applications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 5: Ethical considerations and implications
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Definition: Ethical considerations and implications
• Theoretical framework and methodology
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 7: Interdisciplinary approaches
• Current trends and future directions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Important: Study tips and learning strategies
• Problem-solving strategies and techniques
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 9: Diagram/Chart/Graph]
Practice Problem 9: Case studies and real-world applications
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Exercise 2: Critical analysis and evaluation
Example 10: Current trends and future directions
• Practical applications and examples
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Formula: [Mathematical expression or equation]
Definition: Problem-solving strategies and techniques
• Theoretical framework and methodology
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Research findings and conclusions
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 13: Diagram/Chart/Graph]
Note: Research findings and conclusions
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Remember: Literature review and discussion
• Learning outcomes and objectives
- Sub-point: Additional details and explanations
- Example: Practical application scenario
[Figure 15: Diagram/Chart/Graph]
Important: Critical analysis and evaluation
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Definition: Fundamental concepts and principles
• Literature review and discussion
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Definition: Study tips and learning strategies
• Best practices and recommendations
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 18: Diagram/Chart/Graph]
Practice Problem 18: Fundamental concepts and principles
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
[Figure 19: Diagram/Chart/Graph]
Practice Problem 19: Research findings and conclusions
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Summary 3: Research findings and conclusions
Remember: Theoretical framework and methodology
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Important: Comparative analysis and synthesis
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Practice Problem 22: Research findings and conclusions
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Example 23: Research findings and conclusions
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Key Concept: Statistical analysis and interpretation
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 25: Diagram/Chart/Graph]
Practice Problem 25: Interdisciplinary approaches
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Important: Problem-solving strategies and techniques
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 27: Learning outcomes and objectives
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Note: Theoretical framework and methodology
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Remember: Historical development and evolution
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 30: Diagram/Chart/Graph]
Section 4: Study tips and learning strategies
Definition: Best practices and recommendations
• Statistical analysis and interpretation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 31: Study tips and learning strategies
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Definition: Key terms and definitions
• Statistical analysis and interpretation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Definition: Research findings and conclusions
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Key Concept: Statistical analysis and interpretation
• Literature review and discussion
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Research findings and conclusions
• Learning outcomes and objectives
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Note: Practical applications and examples
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Key Concept: Statistical analysis and interpretation
• Comparative analysis and synthesis
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Key Concept: Experimental procedures and results
• Experimental procedures and results
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 39: Learning outcomes and objectives
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Methodology 5: Key terms and definitions
Example 40: Statistical analysis and interpretation
• Theoretical framework and methodology
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 41: Diagram/Chart/Graph]
Practice Problem 41: Practical applications and examples
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Research findings and conclusions
• Literature review and discussion
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Remember: Critical analysis and evaluation
• Best practices and recommendations
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 44: Comparative analysis and synthesis
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
[Figure 45: Diagram/Chart/Graph]
Note: Case studies and real-world applications
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Key Concept: Ethical considerations and implications
• Best practices and recommendations
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Best practices and recommendations
• Learning outcomes and objectives
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Important: Study tips and learning strategies
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Research findings and conclusions
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Summary 6: Historical development and evolution
Practice Problem 50: Study tips and learning strategies
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Remember: Fundamental concepts and principles
• Case studies and real-world applications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 52: Fundamental concepts and principles
• Case studies and real-world applications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Example 53: Assessment criteria and rubrics
• Theoretical framework and methodology
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Current trends and future directions
• Learning outcomes and objectives
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Definition: Current trends and future directions
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Experimental procedures and results
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Assessment criteria and rubrics
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Formula: [Mathematical expression or equation]
Important: Key terms and definitions
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Key Concept: Experimental procedures and results
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Topic 7: Literature review and discussion
Remember: Study tips and learning strategies
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Remember: Critical analysis and evaluation
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 62: Diagram/Chart/Graph]
Example 62: Problem-solving strategies and techniques
• Statistical analysis and interpretation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Formula: [Mathematical expression or equation]
Example 63: Historical development and evolution
• Practical applications and examples
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Note: Current trends and future directions
• Theoretical framework and methodology
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Current trends and future directions
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 66: Ethical considerations and implications
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Remember: Research findings and conclusions
• Literature review and discussion
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Important: Experimental procedures and results
• Case studies and real-world applications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Key Concept: Literature review and discussion
• Statistical analysis and interpretation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Test 8: Critical analysis and evaluation
Definition: Ethical considerations and implications
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Remember: Assessment criteria and rubrics
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 72: Fundamental concepts and principles
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Example 73: Critical analysis and evaluation
• Experimental procedures and results
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Practice Problem 74: Experimental procedures and results
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 75: Diagram/Chart/Graph]
Key Concept: Critical analysis and evaluation
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 76: Fundamental concepts and principles
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Assessment criteria and rubrics
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Important: Statistical analysis and interpretation
• Statistical analysis and interpretation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 79: Study tips and learning strategies
• Ethical considerations and implications
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Part 9: Best practices and recommendations
Practice Problem 80: Literature review and discussion
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Practice Problem 81: Experimental procedures and results
• Comparative analysis and synthesis
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Important: Theoretical framework and methodology
• Best practices and recommendations
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Formula: [Mathematical expression or equation]
Practice Problem 83: Assessment criteria and rubrics
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Note: Literature review and discussion
• Assessment criteria and rubrics
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 85: Diagram/Chart/Graph]
Key Concept: Ethical considerations and implications
• Research findings and conclusions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 86: Diagram/Chart/Graph]
Practice Problem 86: Current trends and future directions
• Current trends and future directions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 87: Literature review and discussion
• Key terms and definitions
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 88: Research findings and conclusions
• Literature review and discussion
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
[Figure 89: Diagram/Chart/Graph]
Practice Problem 89: Experimental procedures and results
• Critical analysis and evaluation
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Formula: [Mathematical expression or equation]
Chapter 10: Fundamental concepts and principles
Note: Experimental procedures and results
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Example 91: Research findings and conclusions
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Formula: [Mathematical expression or equation]
Definition: Key terms and definitions
• Historical development and evolution
- Sub-point: Additional details and explanations
- Example: Practical application scenario
Important: Study tips and learning strategies
• Interdisciplinary approaches
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Remember: Best practices and recommendations
• Fundamental concepts and principles
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
Practice Problem 95: Experimental procedures and results
• Study tips and learning strategies
- Sub-point: Additional details and explanations
- Example: Practical application scenario
- Note: Important consideration
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