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Advanced Neuro MR
Techniques and
Applications
Advances in Magnetic Resonance
Technology and Applications Series

Series Editors

In-Young Choi, PhD

Department of Neurology, Department of Radiology, Department of Molecular & Integrative
Physiology, Hoglund Biomedical Imaging Center, University of Kansas Medical Center,
Kansas City, KS, United States

Peter Jezzard, PhD

Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences
University of Oxford, Oxford, United Kingdom

Brian Hargreaves, PhD

Department of Radiology, Department of Electrical Engineering, Department of Bioengineering
Stanford University, Stanford, CA, United States

Greg Zaharchuk, MD, PhD

Department of Radiology, Stanford University, Stanford, CA, United States

Titles published:

Volume 1 – Quantitative Magnetic Resonance Imaging – Edited by Nicole Seiberlich and Vikas Gulani

Volume 2 – Handbook of Pediatric Brain Imaging – Edited by Hao Huang and Timothy Roberts

Volume 3 – Hyperpolarized Carbon-13 Magnetic Resonance Imaging and Spectroscopy – Edited by

Peder Larson

Volume 4 – Advanced Neuro MR Techniques and Applications – Edited by In-Young Choi and Peter
Jezzard

Visit the Series webpage at https://www.elsevier.com/books/book-series/advances-in-magnetic-

resonance-technology-and-applications
Advanced Neuro MR
Techniques and
Applications

Edited by
In-Young Choi
Department of Neurology
Hoglund Biomedical Imaging Center
University of Kansas Medical Center
Kansas City, KS, United States

Peter Jezzard
Wellcome Centre for Integrative Neuroimaging
University of Oxford
Oxford, United Kingdom
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be noted herein).
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understanding, changes in research methods, professional practices, or medical treatment may become necessary.
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Library of Congress Cataloging-in-Publication Data

A catalog record for this book is available from the Library of Congress

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A catalogue record for this book is available from the British Library

ISBN: 978-0-12-822479-3

For information on all Academic Press publications

visit our website at https://www.elsevier.com/books-and-journals

Publisher: Mara Conner

Acquisitions Editor: Tim Pitts
Editorial Project Manager: Emily Thomson
Production Project Manager: Prem Kumar Kaliamoorthi
Designer: Greg Harris
Typeset by VTeX
Contents

List of contributors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix
Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xvii

PART 1 FAST AND ROBUST IMAGING

CHAPTER 1 Recommendations for neuro MRI acquisition strategies . . . . . . . . . . . . . . . . 3
Tony Stöcker
CHAPTER 2 Advanced reconstruction methods for fast MRI . . . . . . . . . . . . . . . . . . . . . . . 21
Florian Knoll
CHAPTER 3 Simultaneous multi-slice MRI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37
Andreia S. Gaspar, Ana R. Fouto, and Rita G. Nunes
CHAPTER 4 Motion artifacts and correction in neuro MRI . . . . . . . . . . . . . . . . . . . . . . . . 53
André van der Kouwe

PART 2 CLASSICAL AND DEEP LEARNING APPROACHES TO NEURO

IMAGE ANALYSIS
CHAPTER 5 Statistical approaches to neuroimaging analysis . . . . . . . . . . . . . . . . . . . . . 71
Jeanette A. Mumford
CHAPTER 6 Image registration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83
Hui Zhang
CHAPTER 7 Image segmentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 95
Carole Helene Sudre

PART 3 DIFFUSION MRI

CHAPTER 8 Diffusion MRI acquisition and reconstruction . . . . . . . . . . . . . . . . . . . . . . . . 109
Hua Guo
CHAPTER 9 Diffusion MRI artifact correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 123
Jesper L.R. Andersson
CHAPTER 10 Diffusion MRI analysis methods . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 147
Szabolcs David, Joost Verhoeff, and Alexander Leemans
CHAPTER 11 Diffusion as a probe of tissue microstructure . . . . . . . . . . . . . . . . . . . . . . . . 157
Yaniv Assaf and Daniel Barazany

PART 4 PERFUSION MRI

CHAPTER 12 Non-contrast agent perfusion MRI methods . . . . . . . . . . . . . . . . . . . . . . . . . . 177
Matthias Günther
v
vi Contents

CHAPTER 13 Contrast agent-based perfusion MRI methods . . . . . . . . . . . . . . . . . . . . . . . . 195

Laura C. Bell, Sudarshan Ragunathan, and Anahita Fathi Kazerooni
CHAPTER 14 Perfusion MRI: clinical perspectives . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 211
Kevin Yuqi Wang, Eric K. van Staalduinen, and Greg Zaharchuk

PART 5 FUNCTIONAL MRI

CHAPTER 15 Functional MRI principles and acquisition strategies . . . . . . . . . . . . . . . . . . 231
Martina F. Callaghan and Nadège Corbin
CHAPTER 16 Functional MRI analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 247
Wei Zhang and Janine Bijsterbosch
CHAPTER 17 Neuroscience applications of functional MRI . . . . . . . . . . . . . . . . . . . . . . . . 261
Essa Yacoub and Luca Vizioli
CHAPTER 18 Clinical applications of functional MRI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 277
Natalie L. Voets

PART 6 THE BRAIN CONNECTOME

CHAPTER 19 The diffusion MRI connectome . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 295
Michiel Cottaar and Matteo Bastiani
CHAPTER 20 Functional MRI connectivity . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 309
Eugene Duff
CHAPTER 21 Applications of MRI connectomics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 323
Jessica S. Damoiseaux, Andre Altmann, Jonas Richiardi, and
Sepideh Sadaghiani

PART 7 SUSCEPTIBILITY MRI

CHAPTER 22 Principles of susceptibility-weighted MRI . . . . . . . . . . . . . . . . . . . . . . . . . . . 341
Sagar Buch, Yongsheng Chen, and E. Mark Haacke
CHAPTER 23 Applications of susceptibility-weighted imaging and mapping . . . . . . . . . . . 359
Stefan Ropele

PART 8 MAGNETIZATION TRANSFER APPROACHES

CHAPTER 24 Magnetization transfer contrast MRI . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 373
Seth A. Smith and Kristin P. O’Grady
CHAPTER 25 Chemical exchange saturation transfer (CEST) MRI as a tunable relaxation
phenomenon . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 387
Moritz Zaiss, Felix Glang, and Kai Herz
CHAPTER 26 Clinical application of magnetization transfer imaging . . . . . . . . . . . . . . . . . 403
Francesca Bagnato
 Contents vii

PART 9 QUANTITATIVE RELAXOMETRY AND PARAMETER

MAPPING
CHAPTER 27 Quantitative relaxometry mapping . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 421
Mark D. Does
CHAPTER 28 MR fingerprinting: concepts, implementation and applications . . . . . . . . . . . 435
Dan Ma
CHAPTER 29 Quantitative multi-parametric MRI measurements . . . . . . . . . . . . . . . . . . . . . 451
Gunther Helms

PART 10 NEUROVASCULAR IMAGING

CHAPTER 30 Neurovascular magnetic resonance angiography . . . . . . . . . . . . . . . . . . . . . 469
Kevin M. Johnson
CHAPTER 31 Neurovascular vessel wall imaging: new techniques and clinical applications 485
Chun Yuan, Mahmud Mossa-Basha, Zachary Miller, and Zechen Zhou

PART 11 ADVANCED MAGNETIC RESONANCE SPECTROSCOPY

CHAPTER 32 Single voxel magnetic resonance spectroscopy: principles and applications 503
Ivan Tkáč and Gülin Öz
CHAPTER 33 Magnetic resonance spectroscopic imaging: principles and applications . . . 519
Wolfgang Bogner, Bernhard Strasser, Petr Bednarik, Eva Heckova,
Lukas Hingerl, and Gilbert Hangel
CHAPTER 34 Non-Fourier-based magnetic resonance spectroscopy . . . . . . . . . . . . . . . . . 537
Peter Adany, In-Young Choi, and Phil Lee

PART 12 ULTRA-HIGH FIELD NEURO MR TECHNIQUES

CHAPTER 35 Benefits, challenges, and applications of ultra-high field magnetic resonance 553
Karin Markenroth Bloch and Benedikt A. Poser
CHAPTER 36 Neuroscience applications of ultra-high-field magnetic resonance imaging:
mesoscale functional imaging of the human brain . . . . . . . . . . . . . . . . . . . . 573
Jonathan R. Polimeni
CHAPTER 37 Clinical applications of high field magnetic resonance . . . . . . . . . . . . . . . . . 589
Louise Ebersberger, Mark E. Ladd, and Daniel Paech

Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609
This page intentionally left blank
List of contributors

Peter Adany
Hoglund Biomedical Imaging Center, University of Kansas Medical Center, Kansas City, KS,
United States
Andre Altmann
Centre for Medical Image Computing (CMIC), Department of Medical Physics and Biomedical
Engineering, University College London (UCL), London, United Kingdom
Jesper L.R. Andersson
FMRIB Centre, University of Oxford, Oxford, United Kingdom
Yaniv Assaf
School of Neurobiology, Biochemistry and Biophysics, Faculty of Life Science, Tel Aviv University,
Tel Aviv, Israel
Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
The Strauss Center for Computational Neuroimaging, Tel Aviv University, Tel Aviv, Israel
Francesca Bagnato
Neuroimaging Unit, Neuroimmunology Division, Neurology Department, Vanderbilt University
Medical Center, Nashville, TN, United States
Department of Neurology, Nashville VA Medical Center, TN Valley Healthcare System, Nashville,
TN, United States
Daniel Barazany
The Strauss Center for Computational Neuroimaging, Tel Aviv University, Tel Aviv, Israel
Matteo Bastiani
Wellcome Centre for Integrative Neuroimaging (WIN), Oxford Centre for Functional MRI of the
Brain (FMRIB), University of Oxford, Oxford, United Kingdom
Sir Peter Mansfield Imaging Centre (SPMIC), University of Nottingham, Nottingham,
United Kingdom
Petr Bednarik
High-field MR Center, Department of Biomedical Imaging and Image-guided Therapy, Medical
University of Vienna, Vienna, Austria
Laura C. Bell
Division of Neuroimaging Research, Barrow Neurological Institute, Phoenix, AZ, United States
Janine Bijsterbosch
Department of Radiology, Washington University School of Medicine, Washington University in
St. Louis, St. Louis, MO, United States
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