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 Advances in

BOTANICAL RESEARCH

Series Editors
JEAN-CLAUDE KADER Laboratoire Physiologie Cellulaire
et Moléculaire des Plantes, CNRS,
Université de Paris, Paris, France

MICHEL DELSENY Laboratoire Génome et

Développement des Plantes,
CNRS IRD UP, Université de
Perpignan, Perpignan, France
 CONTRIBUTORS TO VOLUME 48

ANTOINE BAUDRY Section of Cell and Developmental Biology, Division

of Biological Sciences, University of California, San Diego, La Jolla,
California 92093
ELS J. M. VAN DAMME Department of Molecular Biotechnology,
Laboratory of Biochemistry and Glycobiology, Ghent University, 9000
Gent, Belgium
FOLKERT A. HOEKSTRA Laboratory of Plant Physiology, School of
Experimental Plant Sciences, Wageningen University, Wageningen
NL‐6703 BD, The Netherlands
YUE‐IE C. HSING Institute of Plant and Microbial Biology, Academia
Sinica, Taipei 11529, Taiwan
JAE‐HOON JUNG Molecular Signaling Laboratory, Department of
Chemistry, Seoul National University, Seoul 151‐742, Korea
STEVE KAY Section of Cell and Developmental Biology, Division of
Biological Sciences, University of California, San Diego, La Jolla,
California 92093
SANG‐GYU KIM Molecular Signaling Laboratory, Department of
Chemistry, Seoul National University, Seoul 151‐742, Korea
NAUSICAA LANNOO Department of Molecular Biotechnology, Laboratory
of Biochemistry and Glycobiology, Ghent University, 9000 Gent, Belgium
CHUNG‐MO PARK Molecular Signaling Laboratory, Department of
Chemistry, Seoul National University, Seoul 151‐742, Korea
WILLY J. PEUMANS Department of Molecular Biotechnology, Laboratory
of Biochemistry and Glycobiology, Ghent University, 9000 Gent, Belgium
PIL JOON SEO Molecular Signaling Laboratory, Department of Chemistry,
Seoul National University, Seoul 151‐742, Korea
MING‐DER SHIH Institute of Plant and Microbial Biology, Academia
Sinica, Taipei 11529, Taiwan
 CONTENTS OF VOLUMES 35–47

Series Editor (Volumes 35–44)

J.A. CALLOW
School of Biosciences, University of Birmingham,
Birmingham, United Kingdom

Contents of Volume 35

Recent Advances in the Cell Biology of Chlorophyll Catabolism

H. THOMAS, H. OUGHAM and S. HORTENSTEINER

The Microspore: A Haploid Multipurpose Cell

A. TOURAEV, M. PFOSSER and E. HEBERLE-BORS

The Seed Oleosins: Structure Properties and Biological Role

J. NAPIER, F. BEAUDOIN, A. TATHAM and P. SHEWRY

Compartmentation of Proteins in the Protein Storage Vacuole:

A Compound Organelle in Plant Cells
L. JIANG and J. ROGERS

Intraspecific Variation in Seaweeds: The Application of New Tools

and Approaches
C. MAGGS and R. WATTIER

Glucosinolates and Their Degradation Products

R. F. MITHEN
x CONTENTS OF VOLUMES 35–47

Contents of Volume 36

PLANT VIRUS VECTOR INTERACTIONS

Edited by R. Plumb

Aphids: Non-Persistent Transmission

T. P. PIRONE and K. L. PERRY

Persistent Transmission of Luteoviruses by Aphids

B. REAVY and M. A. MAYO

Fungi
M. J. ADAMS

Whitefly Transmission of Plant Viruses

J. K. BROWN and H. CZOSNEK

Beetles
R. C. GERGERICH

Thrips as Vectors of Tospoviruses

D. E. ULLMAN, R. MEIDEROS, L. R. CAMPBELL,
A. E. WHITFIELD, J. L. SHERWOOD and T. L. GERMAN

Virus Transmission by Leafhoppers, Planthoppers and Treehoppers

(Auchenorrhyncha, Homoptera)
E. AMMAR and L. R. NAULT

Nematodes
S. A. MacFARLANE, R. NEILSON and D. J. F. BROWN

Other Vectors
R. T. PLUMB
 CONTENTS OF VOLUMES 35–47 xi

Contents of Volume 37

ANTHOCYANINS IN LEAVES
Edited by K. S. Gould and D. W. Lee

Anthocyanins in Leaves and Other Vegetative Organs: An Introduction

D. W. LEE and K. S. GOULD

Le Rouge et le Noir: Are Anthocyanins Plant Melanins?

G. S. TIMMINS, N. M. HOLBROOK and T. S. FEILD

Anthocyanins in Leaves: History, Phylogeny and Development

D. W. LEE

The Final Steps in Anthocyanin Formation: A Story of

Modification and Sequestration
C. S. WINEFIELD

Molecular Genetics and Control of Anthocyanin Expression

B. WINKEL-SHIRLEY

Differential Expression and Functional Significance of

Anthocyanins in Relation to Phasic Development in
Hedera helix L.
W. P. HACKETT

Do Anthocyanins Function as Osmoregulators in Leaf Tissues?

L. CHALKER-SCOTT

The Role of Anthocyanins for Photosynthesis of Alaskan Arctic

Evergreens During Snowmelt
S. F. OBERBAUER and G. STARR

Anthocyanins in Autumn Leaf Senescence

D. W. LEE

A Unified Explanation for Anthocyanins in Leaves?

K. S. GOULD, S. O. NEILL and T. C. VOGELMANN
xii CONTENTS OF VOLUMES 35–47

Contents of Volume 38

An Epidemiological Framework for Disease Management

C. A. GILLIGAN

Golgi-independent Trafficking of Macromolecules to the Plant Vacuole

D. C. BASSHAM

Phosphoenolpyruvate Carboxykinase: Structure,

Function and Regulation
R. P. WALKER and Z.-H. CHEN

Developmental Genetics of the Angiosperm Leaf

C. A. KIDNER, M. C. P. TIMMERMANS, M. E. BYRNE
and R. A. MARTIENSSEN

A Model for the Evolution and Genesis of the Pseudotetraploid

Arabidopsis thaliana Genome
Y. HENRY, A. CHAMPION, I. GY, A. PICAUD,
A. LECHARNY and M. KREIS

Contents of Volume 39

Cumulative Subject Index Volumes 1–38

Contents of Volume 40

Starch Synthesis in Cereal Grains

K. TOMLINSON and K. DENYER

The Hyperaccumulation of Metals by Plants

M. R. MACNAIR

Plant Chromatin — Learning from Similarities and Differences

J. BRZESKI, J. DYCZKOWSKI, S. KACZANOWSKI,
P. ZIELENKIEWICZ and A. JERZMANOWSKI
 CONTENTS OF VOLUMES 35–47 xiii

The Interface Between the Cell Cycle and Programmed Cell Death in
Higher Plants: From Division unto Death
D. FRANCIS

The Importance of Extracellular Carbohydrate Production by Marine

Epipelic Diatoms
G. J. C. UNDERWOOD and D. M. PATERSON

Fungal Pathogens of Insects: Cuticle Degrading Enzymes and Toxins

A. K. CHARNLEY

Contents of Volume 41

Multiple Responses of Rhizobia to Flavonoids

During Legume Root Infection
JAMES E. COOPER

Investigating and Manipulating Lignin Biosynthesis

in the Postgenomic Era
CLAIRE HALPIN

Application of Thermal Imaging and Infrared Sensing in Plant

Physiology and Ecophysiology
HAMLYN G. JONES

Sequences and Phylogenies of Plant Pararetroviruses, Viruses, and

Transposable Elements
CELIA HANSEN and J. S. HESLOP-HARRISON

Role of Plasmodesmata Regulation in Plant Development

ARNAUD COMPLAINVILLE and MARTIN CRESPI
xiv CONTENTS OF VOLUMES 35–47

Contents of Volume 42

Chemical Manipulation of Antioxidant Defences in Plants

ROBERT EDWARDS, MELISSA BRAZIER-HICKS,
DAVID P. DIXON and IAN CUMMINS

The Impact of Molecular Data in Fungal Systematics

P. D. BRIDGE, B. M. SPOONER and P. J. ROBERTS

Cytoskeletal Regulation of the Plane of Cell Division: An Essential

Component of Plant Development and Reproduction
HILARY J. ROGERS

Nitrogen and Carbon Metabolism in Plastids: Evolution, Integration,

and Coordination with Reactions in the Cytosol
ALYSON K. TOBIN and CAROLINE G. BOWSHER

Contents of Volume 43

Defensive and Sensory Chemical Ecology of Brown Algae

CHARLES D. AMSLER and VICTORIA A. FAIRHEAD

Regulation of Carbon and Amino Acid Metabolism: Roles of Sucrose

Nonfermenting-1-Related Protein Kinase-1 and General Control
Nonderepressible-2-Related Protein Kinase
NIGEL G. HALFORD

Opportunities for the Control of Brassicaceous Weeds of Cropping

Systems Using Mycoherbicides
AARON MAXWELL and JOHN K. SCOTT

Stress Resistance and Disease Resistance in Seaweeds: The Role of

Reactive Oxygen Metabolism
MATTHEW J. DRING

Nutrient Sensing and Signalling in Plants: Potassium and Phosphorus

ANNA AMTMANN, JOHN P. HAMMOND,
PATRICK ARMENGAUD and PHILIP J. WHITE
 CONTENTS OF VOLUMES 35–47 xv

Contents of Volume 44

Angiosperm Floral Evolution: Morphological

Developmental Framework
PETER K. ENDRESS

Recent Developments Regarding the Evolutionary

Origin of Flowers
MICHAEL W. FROHLICH

Duplication, Diversification, and Comparative Genetics of Angiosperm

MADS-Box Genes
VIVIAN F. IRISH

Beyond the ABC-Model: Regulation of Floral Homeotic Genes

LAURA M. ZAHN, BAOMIN FENG and HONG MA

Missing Links: DNA-Binding and Target Gene Specificity of Floral

Homeotic Proteins
RAINER MELZER, KERSTIN KAUFMANN
and GÜNTER THEIßEN

Genetics of Floral Development in Petunia

ANNEKE RIJPKEMA, TOM GERATS and
MICHIEL VANDENBUSSCHE

Flower Development: The Antirrhinum Perspective

BRENDAN DAVIES, MARIA CARTOLANO and
ZSUZSANNA SCHWARZ-SOMMER

Floral Developmental Genetics of Gerbera (Asteraceae)

TEEMU H. TEERI, MIKA KOTILAINEN, ANNE UIMARI,
SATU RUOKOLAINEN, YAN PENG NG, URSULA MALM,
EIJA PÖLLÄNEN, SUVI BROHOLM, ROOSA LAITINEN,
PAULA ELOMAA and VICTOR A. ALBERT

Gene Duplication and Floral Developmental Genetics of Basal Eudicots

ELENA M. KRAMER and ELIZABETH A. ZIMMER
xvi CONTENTS OF VOLUMES 35–47

Genetics of Grass Flower Development

CLINTON J. WHIPPLE and ROBERT J. SCHMIDT

Developmental Gene Evolution and the Origin of Grass

Inflorescence Diversity
SIMON T. MALCOMBER, JILL C. PRESTON, RENATA
REINHEIMER, JESSIE KOSSUTH and ELIZABETH A. KELLOGG

Expression of Floral Regulators in Basal Angiosperms and the Origin and

Evolution of ABC-Function
PAMELA S. SOLTIS, DOUGLAS E. SOLTIS, SANGTAE KIM,
ANDRE CHANDERBALI and MATYAS BUZGO

The Molecular Evolutionary Ecology of Plant Development: Flowering

Time in Arabidopsis thaliana
KATHLEEN ENGELMANN and MICHAEL PURUGGANAN

A Genomics Approach to the Study of Ancient Polyploidy and

Floral Developmental Genetics
JAMES H. LEEBENS-MACK, KERR WALL, JILL DUARTE,
ZHENGUI ZHENG, DAVID OPPENHEIMER and
CLAUDE DEPAMPHILIS

Series Editors (Volume 45– )

JEAN-CLAUDE KADER
Laboratoire Physiologie Cellulaire et Moléculaire des Plantes, CNRS,
Université de Paris, Paris, France
MICHEL DELSENY
Laboratoire Génome et Développement des Plantes,
CNRS IRD UP, Université de Perpignan,
Perpignan, France

Contents of Volume 45

RAPESEED BREEDING

History, Origin and Evolution

S. K. GUPTA and ADITYA PRATAP
 CONTENTS OF VOLUMES 35–47 xvii

Breeding Methods
B. RAI, S. K. GUPTA and ADITYA PRATAP

The Chronicles of Oil and Meal Quality Improvement in Oilseed Rape

ABHA AGNIHOTRI, DEEPAK PREM and KADAMBARI GUPTA

Development and Practical Use of DNA Markers

KATARZYNA MIKOLAJCZYK

Self-Incompatibility
RYO FUJIMOTO and TAKESHI NISHIO

Fingerprinting of Oilseed Rape Cultivars

VLADISLAV ČURN and JANA ŽALUDOVÁ

Haploid and Doubled Haploid Technology

L. XU, U. NAJEEB, G. X. TANG, H. H. GU, G. Q. ZHANG,
Y. HE and W. J. ZHOU

Breeding for Apetalous Rape: Inheritance and Yield Physiology

LIXI JIANG

Breeding Herbicide-Tolerant Oilseed Rape Cultivars

PETER B. E. MCVETTY and CARLA D. ZELMER

Breeding for Blackleg Resistance: The Biology and Epidemiology

W. G. DILANTHA FERNANDO, YU CHEN and
KAVEH GHANBARNIA

Development of Alloplasmic Rape

MICHAL STARZYCKI, ELIGIA STARZYCKI and JAN PSZCZOLA

Honeybees and Rapeseed: A Pollinator–Plant Interaction

D. P. ABROL
xviii CONTENTS OF VOLUMES 35–47

Genetic Variation and Metabolism of Glucosinolates

NATALIA BELLOSTAS, ANNE DORTHE SØRENSEN,
JENS CHRISTIAN SØRENSEN and HILMER SØRENSEN

Mutagenesis: Generation and Evaluation of Induced Mutations

SANJAY J. JAMBHULKAR

Rapeseed Biotechnology
VINITHA CARDOZA and C. NEAL STEWART, JR.

Oilseed Rape: Co-existence and Gene Flow from Wild Species

RIKKE BAGGER JØRGENSEN

Evaluation, Maintenance, and Conservation of Germplasm

RANBIR SINGH and S. K. SHARMA

Oil Technology
BERTRAND MATTHÄUS

Contents of Volume 46

INCORPORATING ADVANCES IN PLANT PATHOLOGY

Nitric Oxide and Plant Growth Promoting Rhizobacteria: Common Features

Influencing Root Growth and Development
CELESTE MOLINA-FAVERO, CECILIA MÓNICA CREUS, MARÍA
LUCIANA LANTERI, NATALIA CORREA-ARAGUNDE, MARÍA
CRISTINA LOMBARDO, CARLOS ALBERTO BARASSI
and LORENZO LAMATTINA

How the Environment Regulates Root Architecture in Dicots

MARIANA JOVANOVIC, VALÉRIE LEFEBVRE, PHILIPPE
LAPORTE, SILVINA GONZALEZ-RIZZO, CHRISTINE
LELANDAIS-BRIÈRE, FLORIAN FRUGIER, CAROLINE
HARTMANN and MARTIN CRESPI
 CONTENTS OF VOLUMES 35–47 xix

Aquaporins in Plants: From Molecular Structure to Integrated Functions

OLIVIER POSTAIRE, LIONEL VERDOUCQ and
CHRISTOPHE MAUREL

Iron Dynamics in Plants

JEAN-FRANÇOIS BRIAT

Plants and Arbuscular Mycorrhizal Fungi: Cues and Communication in the

Early Steps of Symbiotic Interactions
VIVIENNE GIANINAZZI-PEARSON, NATHALIE
SÉJALON-DELMAS, ANDREA GENRE, SYLVAIN
JEANDROZ and PAOLA BONFANTE

Dynamic Defense of Marine Macroalgae Against Pathogens: From Early

Activated to Gene-Regulated Responses
AUDREY COSSE, CATHERINE LEBLANC and
PHILIPPE POTIN

Contents of Volume 47

INCORPORATING ADVANCES IN PLANT PATHOLOGY

The Plant Nucleolus

JULIO SÁEZ-VÁSQUEZ AND FRANCISCO JAVIER MEDINA

Expansins in Plant Development

DONGSU CHOI, JEONG HOE KIM AND YI LEE

Molecular Biology of Orchid Flowers: With Emphasis on Phalaenopsis

WEN-CHIEH TSAI, YU-YUN HSIAO, ZHAO-JUN PAN, CHIA-
CHI HSU, YA-PING YANG, WEN-HUEI CHEN AND
HONG-HWA CHEN
xx CONTENTS OF VOLUMES 35–47

Molecular Physiology of Development and Quality of Citrus

FRANCISCO R. TADEO, MANUEL CERCÓS, JOSÉ M.
COLMENERO-FLORES, DOMINGO J. IGLESIAS, MIGUEL A.
NARANJO, GABINO RÍOS, ESTHER CARRERA, OMAR
RUIZ-RIVERO, IGNACIO LLISO, RAPHAË L MORILLON,
PATRICK OLLITRAULT AND MANUEL TALON

Bamboo Taxonomy and Diversity in the Era of Molecular Markers

MALAY DAS, SAMIK BHATTACHARYA, PARAMJIT SINGH,
TARCISO S. FILGUEIRAS AND AMITA PAL
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08 09 10 11 12 10 9 8 7 6 5 4 3 2 1
 Molecular Mechanisms Underlying Vascular Development

JAE‐HOON JUNG, SANG‐GYU KIM, PIL JOON SEO AND

CHUNG‐MO PARK

Molecular Signaling Laboratory, Department of Chemistry,

Seoul National University, Seoul 151‐742, Korea

I. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
II. Vascular Tissues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
A. Xylem........................................................................... 7
B. Phloem ......................................................................... 8
III. Growth in Vascular Plants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
A. Shoot Growth ................................................................. 10
B. Comparison Between Dicots and Monocots ............................. 11
C. Root Growth .................................................................. 12
IV. Model Systems for Studying Vascular Development . . . . . . . . . . . . . . . . . . . . . 14
A. Arabidopsis .................................................................... 14
B. Populus ......................................................................... 15
C. Zinnia........................................................................... 16
V. Vascular Continuity and Regulatory Signals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
A. Polar Auxin Transport ...................................................... 18
B. Models for Vascular Strand Formation................................... 24
VI. Regulation of Radial Patterning of Vascular Bundles . . . . . . . . . . . . . . . . . . . . 26
A. Opposite Roles of HD‐ZIP IIIs and Kanadis ............................ 27
B. Regulation of HD‐ZIP III Activities by Competitive Inhibitors ...... 29
C. Other Adaxial–abaxial Axis Determinants ............................... 30
VII. Identification of Vascular Development‐related Factors . . . . . . . . . . . . . . . . . 32
A. HD‐ZIP IIIs and miRNA ................................................... 32
B. Cytokinin ...................................................................... 34
C. Brassinosteroid................................................................ 37
D. Xylogen ........................................................................ 38
E. Other Genes Involved in Vascular Differentiation ...................... 39

Advances in Botanical Research, Vol. 48 0065-2296/08 $35.00

Incorporating Advances in Plant Pathology DOI: 10.1016/S0065-2296(08)00401-1
Copyright 2008, Elsevier Ltd. All rights reserved.
2 J.‐H. JUNG ET AL.

VIII. Tracheary Element Differentiation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 42

A. Secondary Wall Formation ................................................. 43
B. Programmed Cell Death..................................................... 47
IX. Concluding Remarks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50
Acknowledgments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52

ABSTRACT
The plant vascular system is a complicated network of conducting tissues that inter-
connects all organs and transports water, minerals, nutrients, organic compounds,
and various signaling molecules throughout the plant body. It is composed of two
major tissues, xylem and phloem, that are diVerentiated from the meristemic tissue,
procambium. Although physiological functions of the vascular tissues are well docu-
mented, genetic networks that regulate the process of vascular development are still
poorly understood. Thorough researches on several model plants, such as Arabidop-
sis, Populus, and Zinnia, molecular genetic, genomic, and biochemical approaches
have provided significant insights into the molecular mechanisms underlying vascular
development. An array of signals and signaling molecules, including receptor mole-
cules, ligands, vesicle‐traYcking components, and transcription factors, has been
shown to mediate the specification and diVerentiation of vascular tissues and the
vascular bundle patterning. Accordingly, future challenge in vascular biology is
to understand how these signals are coordinately integrated to achieve optimized
vascular development under a given growth condition.

ABBREVIATIONS

APL ALTERED PHLOEM DEVELOPMENT

ATHB Arabidopsis thaliana homeobox
BR brassinosteroid
CC companion cell
CESA cellulose synthase
GT glycosyltransferase
GX glucuronoxylan
HD‐ZIP III homeodomain‐leucine zipper III
HK histidine kinase
IAA indole‐3‐acetic acid
KAN KANADI
miRNA microRNA
PAT polar auxin transport
PCD programmed cell death
PGP P‐glycoprotein
PINSV PIN1‐specific vesicle
RAM root apical meristem
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