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High-Performance
Liquid
Chromatography
of
Peptides and Proteins:
Separation, Analysis,
and
Conformation
Editors
Colin T. Mant
R esearch Associate
D epartm ent o f B iochem istry
U niversity o f A lberta
Edm onton, A lberta, Canada
Robert S. Hodges
Professor
D epartm ent o f B iochem istry
U niversity o f A lberta
Edm onton, A lberta, C anada
CRC Press
Boca Raton London New York W ashington, D.C.
L ibrary of Congress Cataloging-ln-Publlcation D ata
This book contains information obtained from authentic and highly regarded sources. Reprinted material is
quoted with permission, and sources are indicated. A wide variety of references are listed. Reasonable efforts
have been made to publish reliable data and information, but the author and the publisher cannot assume
responsibility for the validity of all materials or for the consequences of their use.
Neither this book nor any part may be reproduced or transmitted in any form or by any means, electronic or
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On the face of it, preparing what the editors wished to be a comprehensive and practical
publication encompassing high-performance liquid chromatography (HPLC) of peptides and
proteins appeared to be a somewhat daunting ambition. There is certainly no scarcity of material
on the topic at hand (from sources including published papers, books, industrial communica
tions, and even word-of-mouth), a reflection of the explosive growth in the application of HPLC
to peptide/protein separations during the past decade. However, to paraphrase a comment in one
of the enclosed articles (“the approach to their separation must be tailored to the separation
goals”)»we felt that our approach to the book had to be tailored to our perceived goal of a practical
teaching manual for both die novice HPLC user as well as more experienced chromatographers.
Thus, in addition to being a hands-on teaching manual and textbook, we also wanted the book
to represent the perfect reference guide and training tool for personnel in well-established HPLC
laboratories.
With these aims in mind, we requested our contributors, scientists of international renown,
to help us prepare a series of precise, easy-to-read articles, emphasizing the practical approach
to HPLC with minimal theory, although with clear expression of the underlying principles to
peptide and protein separations. We felt that by having a large number of contributors (117)
producing a substantial number (82) of short articles (containing clear and simplistic figures and
only key references), with the concomitant advantage of expressing different viewpoints and
approaches, we could produce a publication representing the flavor of the HPLC field as a whole,
instead of just a confined vision. Although coordinating this considerable number of contribu
tors and articles necessarily took time and put some stress on us as editors, it was undoubtedly
worth it. All of the major modes of microbore, ultrafast, and analytical HPLC (size-exclusion,
ion-exchange, reversed-phase, hydrophobic interaction, affinity, and immunoaffinity chroma
tography) are discussed, together with a presentation of preparative HPLC, including displace
ment techniques. Problem-solving approaches to the separation of various classes of biologi
cally active peptides and proteins (e.g., peptide hormones, viral proteins, hydrophobic integral
membrane proteins, receptor proteins and enzymes) are thoroughly explored. The importance
of peptide standards for monitoring column and instrument performance and for optimizing
separation conditions is heavily emphasized. In order to maximize the practical potential of
HPLC, several articles focus on the choice of the correct detection method (electrochemical,
UV, fluorescence) as well as the need for a proper knowledge of approaches to column and
instrument maintenance and trouble-shooting. A section of predictive approaches, an area of
ever-growing interest, deals with computer simulation of both peptide separations and peptide
structure. Also included is the value of HPLC for protein conformation/folding studies and
protein structure determination and verification by peptide mapping. Aids to HPLC users
include descriptions of trace enrichment techniques, batch extraction of peptides, and sample
preparation methods. Finally, various complementary techniques to HPLC are described,
including amino acid analysis, preparation of proteins for microsequence analysis, sequencing
techniques, and capillary zone electrophoresis.
Good intentions are all very well, but to produce the kind of publication we envisaged
required the support and cooperation of all our contributors. One of the prime rewards of this
whole endeavor has been our making the acquaintance of a host of scientists we may not
otherwise have met, considering our diverse interests. Our sincere thanks to one and all.
Colin Mant
Bob Hodges
University of Alberta
Edmonton, Canada
ACKNOWLEDGMENTS
We are grateful for the continuing support of the Medical Research Council of Canada and
the Alberta Heritage Foundation for Medical Research for providing the funding and equipment
necessary for us to maintain international competitiveness in the HPLC field. We also thank the
co-directors (Dr. Kay and Dr. Smillie) of the MRC Group for their support and understanding
of the time taken to complete this worthwhile project.
Our thanks to secretaries Vicki Luxton and Dawn Lockwood for putting up with an enormous
typing burden.
Finally, our thanks to wives Janice Mant and Phyllis Hodges for their encouragement and
patience with the whole venture. Like us, they believe it was worth it. For this reason, and many
others, we dedicate this book to them.
THE EDITORS
Dr. Colin T. M antj Ph.D., is a Research Associate in the laboratory of Dr. Robert S. Hodges
at the University of Alberta, Edmonton, Alberta, Canada.
Dr. Mant attended the University of Manchester Institute of Science and Technology
(UMIST) in Manchester, England and received a B.Sc. (Hons.) degree in biochemistry from the
Victoria University of Manchester in 1975. He carried out his postgraduate work at the
University of Kent at Canterbury, England, under the supervision of Dr. Ronald B. Cain. This
work, involving research into the microbial catabolism of herbicide-related synthetic pyrimidi
nes and carried out in collaboration with I.C.I. (Plant Protection) Ltd. in Berkshire, England, led
to Dr. Mant receiving his Ph.D. in Biochemistry in 1982.
Dr. Mant joined the laboratory of Dr. Hodges in 1982 as a Medical Research Council of
Canada postdoctoral fellow (1982 to 1987) and Research Associate (1987 to present) in the
renowned Medical Research Council of Canada Group in Protein Structure and Function. He has
more than 45 publications in the area of HPLC methodology.
Apart from the day-to-day management of the HPLC projects in Dr. Hodges’ group, now an
important part of the total research carried out in the editors’ laboratory, Dr. Mant also acts as
key collaborator with Dr. Hodges on many of the other research interests of the group,
particularly on projects involving protein design, computer simulation, and muscle regulation.
He is also a local organizer for the 13th American Peptide Symposium, to be held in Edmonton
in 1993.
Dr. R obert S. Hodges, Ph.D., is Professor of Biochemistry and a member of the Medical
Research Council of Canada Group in Protein Structure and Function at the University of
Alberta, Edmonton, Alberta, Canada.
Dr. Hodges graduated in 1965 from the University of Saskatchewan, Saskatoon, Sas
katchewan, Canada with a B.Sc. degree in honors biochemistry. After graduation, he worked for
2 years as Research Scientific Service Officer, Department of National Defence, Defence
Research Board, Government of Canada, in 1971, he obtained his Ph.D. degree in biochemistry
from the University of Alberta. This work was supervised by Dr. L. B. Smillie and involved the
amino acid sequence determination of the first two-stranded a-helical coiled-coil (tropomyosin).
This research led to the hypothesis that a hydrophobic 3— 4 repeat was responsible for the
formation and stabilization of this unique structure. After graduation, he worked as a Medical
Research Council of Canada postdoctoral fellow (1971 to 1973) and Research Associate (1973
to 1974) in the laboratory of Professor Bruce Merrifield, Nobel Prize winner in Chemistry in
1984, at the Rockefeller University, New York. The research involved structure-function
studies of the enzyme ribonucléase A through the chemical synthesis of protein fragments using
the Merrifield solid-phase method.
In 1974, Dr. Hodges was appointed Assistant Professor of Biochemistry and became one of
the five founding members of the Medical Research Council of Canada Group In Protein
Structure and Function. The deficiencies of traditional chromatographic methods for purifica
tion of synthetic peptides, proteins, and protein fragments were evident to the group and Dr.
Hodges purchased their first HPLC in 1979 to maintain international competitiveness. He
became an Associate Professor in 1977 and Professor in 1984.
The demand on Dr. Hodges’ research laboratory for synthetic peptides and peptide-
conjugates by the Canadian research community resulted in the formation, in 1985, of a cost-
recovery service facility, the Alberta Peptide Institute, of which he remains Director.
In 1986, Dr. Hodges formed S.P.I. Synthetic Peptides Incorporated, a University of Alberta
spin-off research and development company. The objectives of S.P.I. under his supervision as
President, are to conunercialize peptide-based products (peptide pharmaceuticals, peptide
diagnostics, and synthetic vaccines). The company also markets HPLC peptide standards,
HPLC software (ProDigest LC) and peptide/protein structure prediction software. S.P.I. offers
a custom synthesis and HPLC methodology development service for the pharmaceutical and
biotechnology industry.
In 1990, the Government of Canada began a new program to promote excellence in Canadian
science. The Networks of Centres of Excellence (involving universities and industrial partners
across Canada). Dr. Hodges is a participant in two of these programs. First, the Protein
Engineering Network: 3D-Structure, Function and Design. The second, the Bacterial Diseases
Network: Molecular Strategies for the Study and Control of Bacterial Pathogens of Humans,
Animals, Fish and Plants.
Dr. Hodges in 1986 received special recognition for contributions to biotechnology in “A
Tribute to Biotechnology” sponsored by the Government of Alberta. In 1988, he joined the
Editorial Board of the journal Peptide Research, In 1990, he became a member of the program
committee for the 12th American Peptide Symposium and will chair the 13th American Peptide
Symposium in Edmonton, in 1993. In 1991, he was elected a Fellow of the Royal Society of
Canada.
It is noteworthy that HPLC methodology has played and will continue to play a critical role
in the success of biotechnology. Dr. Hodges has published more than 50 HPLC methodological
papers from over 170 research papers. His current major research interests include the de novo
design of peptides and proteins with novel structural and biological properties, immunogenicity/
antigenicity of peptides and proteins, development of synthetic vaccines to viral and bacterial
pathogens and understanding muscle regulation. Peptide synthesis and HPLC are the major
methodologies utilized to achieve his goals and the importance of HPLC is reflected by the dozen
HPLC instruments utilized by his group.
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