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Methods in
Molecular Biology 1463
Germline
Stem Cells
Second Edition
METHODS IN MOLECULAR BIOLOGY
Series Editor
John M. Walker
School of Life and Medical Sciences
University of Hertfordshire
Hatfield, Hertfordshire, AL10 9AB, UK
Second Edition
Edited by
Michael Buszczak
Department of Molecular Biology
University of Texas Southwestern Medical Center
Dallas, TX, USA
Editor
Michael Buszczak
Department of Molecular Biology
University of Texas Southwestern Medical Center
Dallas, TX, USA
Adult stem cells maintain tissue homeostasis by producing progeny that replace cells lost
through the course of normal cellular turnover or because of injury. Germline stem cells are
unique amongst stem cells because they produce daughter cells that develop into gametes,
which ultimately serve to give rise to the next generation. Thus, germline stem cells are
essential for the continued propagation of many sexually reproducing organisms.
Germ cells are imbued with several unique properties. They are the only cells to undergo
meiosis. Germ cells across species express many of the same markers and experience exten-
sive epigenetic reprogramming. These cells have specialized mechanisms that help maintain
the integrity of the genome and prevent the integration of selfish DNA elements. Several
somatic tumors express genes normally specific to germ cells and germ cells themselves can
give rise to specific types of cancer. Therefore, a better understanding of germ cells will have
a broad impact across many fields of biology.
Germline stem cell biology has witnessed an explosion of new findings and techniques
since that last edition of Germline Stem Cells in the Methods in Molecular Biology series.
The optimization of live-cell imaging techniques, improved cell purification protocols and
the identification of germ cells in a number of genetically tractable organisms now allows for
the characterization of germ cells at a greater depth and higher resolution than previously
attainable. This new edition of Germline Stem Cells is intended to provide researchers with
selected genetic, molecular, biochemical, and cell biological techniques used in germ cell
research. While the focus here is on primordial germ cells and germline stem cells, many of
the techniques and principles presented in the chapters of this issue may be applicable to
many different types of adult stem cells.
I would like to thank Prof. John M. Walker and the staff at Springer for their invitation,
assistance, and patience during the preparation of this book. I would like to thank Nevine
Shalaby for her help throughout this entire process. I would also like to express my sincere
appreciation and gratitude to the various contributors for sharing their insights and expertise
with the germline stem cell research community.
v
Contents
Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . v
Contributors. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix
vii
viii Contents
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 227
Contributors
ix
x Contributors
Abstract
The Caenorhabditis elegans germline is an excellent model for studying the regulation of a pool of stem cells
and progression of cells from a stem cell state to a differentiated state. At the tissue level, the germline is
organized in an assembly line with the germline stem cell (GSC) pool at one end and differentiated cells at
the other. A simple mesenchymal niche caps the GSC region of the germline and maintains GSCs in an
undifferentiated state by signaling through the conserved Notch pathway. Downstream of Notch signaling,
key regulators include novel LST-1 and SYGL-1 proteins and a network of RNA regulatory proteins. In this
chapter we present methods for characterizing the C. elegans GSC pool and early germ cell differentiation.
The methods include examination of the germline in living and fixed worms, cell cycle analysis, and analysis
of markers. We also discuss assays to separate mutants that affect the stem cell vs. differentiation decision
from those that affect germ cell processes more generally.
Key words Stem cells, Progenitor cells, C. elegans, Germline, Proliferation, Meiosis, Mitosis, EdU,
Cell cycle
1 Introduction
Identification of stem cells and the pathways that regulate them are
important for both clinical research and more basic biomedical
science. The Caenorhabditis elegans germline is a simple and well-
studied model for understanding the genetic and molecular regu-
lation of stem cells [1–13]. Several qualities distinguish the
C. elegans gonad as a model for GSC regulation. First, in contrast
to other GSC models with asymmetrically dividing stem cells,
C. elegans GSCs are maintained as a pool (Fig. 1a) [14, 15].
Second, all stages of germ cell development, from stem cell to
differentiated gamete, are present in the adult gonad at one time
(Fig. 1a). Third, establishment and maintenance of C. elegans
germline stem cells is controlled by a simple, single-celled
Electronic supplementary material: The online version of this chapter (doi: 10.1007/978-1-4939-4017-2_1)
contains supplementary material, which is available to authorized users.
Michael Buszczak (ed.), Germline Stem Cells, Methods in Molecular Biology, vol. 1463,
DOI 10.1007/978-1-4939-4017-2_1, © Springer Science+Business Media New York 2017
1
2 Sarah L. Crittenden et al.
Progenitor Zone
Early meiotic
Distal pool Proximal pool prophase
DTC
niche
B LST-1
SYGL-1
GLP-1/Notch Germline stem cell
signaling ? FBF-1 self-renewal
FBF-2
2
L2
16
L3
~60
L4
~400
Maintenance phase
Adult
(24 hour) ~2000
cell death
Adult embryos
(96 hour) ~2000
mesenchymal niche, the distal tip cell (DTC) (Fig. 1a) [16]. Finally,
regulators of stem cell self-renewal have been identified and ana-
lyzed in depth (Fig. 1b). Both the Notch signaling pathway [1] and
the PUF family of RNA regulators maintain stem cells in C. elegans
[1, 7, 17, 18]. These regulators also control stem cells in other
systems. For example, Notch signaling has been suggested to play
roles in stem cell regulation in vertebrates ([4] and refs. therein).
PUF proteins are required for germline stem cell self-renewal in
flies ([1] and refs. therein) and have been found in human sperma-
togonia and embryonic stem cells [19].
The C. elegans GSCs generate the germline during larval devel-
opment, expanding it from 2 to 2000 cells (Fig. 1c); they maintain
the germline during adulthood, replenishing it as mature gametes
are lost to cell death and fertilization (Fig. 1c); and they regenerate
the germline after starvation [14, 20–22]. GSCs are pluripotent,
giving rise to both sperm and oocytes, which, after fertilization,
produce a totipotent embryo.
GSC behavior is influenced by sexual identity [23], food abun-
dance [21, 22, 24, 25], food quality [26], age [27, 28], and rate of
gamete production [23, 29]. In addition, a number of screens have
identified genes that modify the activity of the core pathway
controlling GSCs. Modifiers include splicing factors, components
of the proteasome, RNA binding proteins, and genes of unknown
function (see Refs. in [1, 2, 30–32]).
In this chapter we describe methods for studying C. elegans
germline stem and progenitor cells. Criteria to identify stem cells
can vary; thus it is crucial to define what is known in the system
being worked on and to define the criteria for identifying cell types.
In the C. elegans germline, immature stem and progenitor cells are
at the distal end, adjacent to the distal tip cell (Fig. 1a). The region
of the germline containing these cells has been referred to by
various names, including mitotic region, mitotic zone, and prolif-
eration zone. It has become clear that the undifferentiated state is
maintained independent of the cell cycle state, so a term such as
progenitor zone [27, 28] is more appropriate. The progenitor zone
contains the germline stem cells (GSCs) as well as their progeny in
various early states of differentiation. Lineage tracing is not yet
possible in the C. elegans germline, so GSCs cannot be unequivo-
cally identified. However, several experiments indicate that GSCs
reside within the distal part of the progenitor zone. There is a pool
of 35–70 undifferentiated cells found within the distal 5–8 rows
of the germline [15] that have similar cell cycle properties [14,
33–35], can regenerate the entire germline after starvation
[21, 22], and express high levels of the mitotic activators GLP-1,
lst-1, sygl-1, FBF-1 and FBF-2 and low levels of the meiotic activa-
tors GLD-1 and GLD-2 (Fig. 1b and Fig. 8) [1, 9, 15, 31, 36–38].
This group of cells comprises the GSC pool.
4 Sarah L. Crittenden et al.
Farther from the DTC, the proximal pool includes germ cells in
the early phases of differentiation. Two separate decisions, both of
which are required for gametogenesis, occur in this pool: the
decision to enter the meiotic cell cycle [15] and the decision to
become sperm or oocyte [39]. The proximal pool cells express
markers of both meiotic and sexual differentiation, such as GLD-
1, HIM-3, and FOG-1 (Fig. 8) [15, 38, 40–43]. Proximal pool
germ cells are similar to transit-amplifying cells in other systems in
that they have been triggered to differentiate but are still dividing
mitotically. Their amplification is not robust; they are estimated to
divide 1–2 times before entering meiosis [38]. In addition to
transit-amplifying cells, the proximal pool includes germ cells that
are premeiotic, defined as cells that will enter meiotic prophase
without passing through mitosis [14, 34, 41] (Fig. 1a and
Fig. 8). Since, at present, there are no good markers for premeiotic
S phase, we cannot reliably distinguish premeiotic S-phase cells
from mitotically dividing cells.
An outstanding question is whether all cells in the progenitor
zone have stem cell potential. It is technically difficult to test this
directly in the C. elegans germline; however, it is known that distal
and proximal pools have shared characteristics. They all express the
GLP-1/Notch receptor and depend on its activity to inhibit entry
into meiosis. They all cycle and do so at similar rates and they also
divide with a random orientation [8, 14, 23, 33, 34, 44]. They all
have sexual identity based on sex-specific differences in morphol-
ogy, gene expression, and cell cycle rate [23, 33, 43, 45–47].
Whether these shared characteristics indicate shared potential is
unclear.
We will present methods for identifying and characterizing
undifferentiated and proliferating germ cells, including identifica-
tion of the progenitor zone, putative stem cells, and the premeiotic
region. We will then discuss how we characterize new mutants.
There are excellent chapters about the germline and useful techni-
ques available on the WormBook website (http://www.wormbook.
org), the WormBook Methods website (http://www.wormbook.
org/toc_wormmethods.html), and in several books [48–51].
2 Materials
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