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    (Ebook) Microbial Ecology in Sustainable Agroecosystems by
      Tanya E. Cheeke (Editor); David C. Coleman (Editor); Diana
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         Agriculture/Ecology
                                                                                                            Cheeke
                                                                                                           Coleman
          Microbial Ecology in
                                                                                                             Wall
Topics include:
           The contributors range from long-time ecological researchers to graduate students and
           early career scientists, representing a wide spectrum of experience, ages, diversity,
           and research interests in this area. They cover the diversity and complexity of microbial
           activity and interactions in soil systems and the many ways in which microorganisms may
           be manipulated and managed to improve the functions of crop rhizospheres and thereby
           maximize crop yields and overall productivity. These recommendations can be used to
           direct and influence agricultural and environmental policy and guide future research in
           sustainable agricultural systems management.
                                                                                      K12440
                                                                               ISBN 978-1-4398-5296-5
                                                                                                 90000
9 781439 852965
Advisory Board
Editor-in-Chief
Clive A. Edwards, The Ohio State University, Columbus, Ohio
Editorial Board
Miguel Altieri, University of California, Berkeley, California
Patrick J. Bohlen, University of Central Florida, Orlando, FL
Lijbert Brussaard, Agricultural University, Wageningen, The Netherlands
David Coleman, University of Georgia, Athens, Georgia
D.A. Crossley, Jr., University of Georgia, Athens, Georgia
Adel El-Titi, Stuttgart, Germany
Charles A. Francis, University of Nebraska, Lincoln, Nebraska
Stephen R. Gliessman, University of California, Santa Cruz, California
Thurman Grove, North Carolina State University, Raleigh, North Carolina
Maurizio Paoletti, University of Padova, Padova, Italy
David Pimentel, Cornell University, Ithaca, New York
Masae Shiyomi, Ibaraki University, Mito, Japan
Sir Colin R.W. Spedding, Berkshire, England
Moham K. Wali, The Ohio State University, Columbus, Ohio
    Edited by
 Tanya E. Cheeke
David C. Coleman
  Diana H. Wall
CRC Press
Taylor & Francis Group
6000 Broken Sound Parkway NW, Suite 300
Boca Raton, FL 33487-2742
This book contains information obtained from authentic and highly regarded sources. Reasonable efforts have been made to
publish reliable data and information, but the author and publisher cannot assume responsibility for the validity of all materials
or the consequences of their use. The authors and publishers have attempted to trace the copyright holders of all material repro-
duced in this publication and apologize to copyright holders if permission to publish in this form has not been obtained. If any
copyright material has not been acknowledged please write and let us know so we may rectify in any future reprint.
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Center Photo
Intercropping on a small farm on San Juan Island, WA, USA. Photo credit: C. A. Miles,
Washington State University
                                                                                      v
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Contents
Foreword..........................................................................................................................................ix
Preface...............................................................................................................................................xi
Acknowledgments....................................................................................................................... xiii
About the Editors...........................................................................................................................xv
Contributors................................................................................................................................. xvii
Chapter 1            Soil ecology and agroecosystem studies: A dynamic and diverse world......1
                     David C. Coleman, Vadakattu V.S.R. Gupta, and John C. Moore
                                                                                                                                                   vii
viii                                                                                                                                     Contents
Chapter 9           Maize legume relay intercrops in Malawi: Meeting short- and long-
                    term sustainability goals.....................................................................................229
                    Carol Shennan and Dorothy Sirrine
                                                                             Clive A. Edwards
                                                                                   Editor in Chief
                                                                         Advances in Agroecology
                                                                                                ix
This page intentionally left blank
Preface
Tanya E. Cheeke, David C. Coleman, and Diana H. Wall
While soil ecologists continue to be on the forefront of research on biodiversity and ecosys-
tem function, there are few interdisciplinary studies that incorporate ecological knowledge
into sustainable land management practices. Conventional, high-fossil-fuel, input-based
agricultural systems can reduce soil biodiversity, alter soil community structure and nutri-
ent cycling, and lead to greater dependence on energy-intensive practices. These practices
can lead to habitat destruction, greenhouse gas production, and damage to soil ecosys-
tems. This book brings together soil ecologists, microbial ecologists, and agroecologists
working globally to demonstrate how research in soil ecology can contribute to the long-
term sustainability of agricultural systems.
     Many of the benefits of sustainable agricultural systems—stable yields, minimized
external inputs, and reduced fossil fuel usage—rely on soil ecological theory and are key
to sustaining soils worldwide. Current challenges in sustainable agricultural research
could help to drive new questions in the blossoming field of soil microbial ecology. To
improve linkages among soil ecologists, microbial ecologists, and agroecologists, for this
volume we invited scientists whose research overlaps the subdisciplines of soil ecology,
microbial ecology, and agroecology. Several of the chapters focus on incorporating soil
ecological or microbial ecological theory into agricultural practice to improve agricultural
productivity and sustainability. Other chapters consider challenges in sustainable agri-
cultural research and the need for coalescing new avenues of research in agriculture and
soil ecology. A concluding chapter addresses how to sustain soil diversity and ecosystem
services in agriculture.
     These chapters were prepared by many of the contributing panelists from a sympo-
sium at the 2009 Ecological Society of America annual meeting, “How Can Soil Microbial
Ecology Contribute to the Sustainability of Agricultural Systems?” that was held in
Albuquerque, New Mexico. The authors range from long-time ecological researchers to
graduate students and early-career scientists, representing a wide spectrum of experi-
ence, ages, diversity, and research interests in this area. The authors have identified five
key areas of research that can be combined to support and direct sustainable land man-
agement practices: agriculture, biodiversity, ecosystem services, integrated soil ecology
                                                                                           xi
xii                                                                              Preface
research, and policy. These recommendations can be used to direct and influence agri-
cultural and environmental policy and guide future research in sustainable agricultural
systems management.
    We hope this book will generate synergy among soil ecologists, microbial ecologists,
and agroecologists and inspire new and innovative lines of research.
Acknowledgments
We thank the many friends, coauthors, and colleagues who made the symposium and book
possible. For sponsorship of the symposium at the Ecological Society of America (ESA)
meetings in Albuquerque, New Mexico, in August 2009, we are grateful to the following:
W. J. Landesman (symposium coorganizer); ESA Soil Ecology Section (Nancy Johnson,
president); ESA Microbial Ecology Section (Brendan Bohannan); and ESA Agroecology
Section (Dan Pavuk, secretary).
    Each chapter was reviewed by two or three external reviewers. Their comments and
suggestions were helpful to the authors of the chapters and thus were vital to the suc-
cess of this volume. We express our deep appreciation to Dr. Suellen Melzer-Drinnen at
Colorado State University for her help with the final preparation for the book.
    Research and the ideas developed by several of the authors were supported, in part,
by research grants from the U.S. Department of Agriculture, the U.S. Environmental
Protection Agency Science to Achieve Results Fellowship program, and the National
Science Foundation. In the interest of saving space, we are omitting mention of individual
grant numbers.
    Last and not least, we appreciate the support of Dr. Clive Edwards and CRC Press for
providing encouragement for this book project.
                                                                                       xiii
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About the Editors
Tanya E. Cheeke is a PhD candidate and an Environmental Protection Agency Science
to Achieve Results (EPA STAR) Fellow in the Department of Biology at Portland State
University (PSU) and a visiting scholar at Indiana University. Her dissertation research
examines symbiotic plant-fungal relationships in transgenic Bt maize and assesses the
effects of the cultivation of Bt crops on the abundance and diversity of arbuscular mycor-
rhizal fungi in the soil ecosystem. Tanya received her bachelor of science in sustainable
agriculture/environmental science from the Evergreen State College. At PSU, she has
served as the graduate student representative for the Promotion and Tenure Committee
and the Faculty Hiring Committee and was elected by her colleagues to serve as secre-
tary/treasurer (2007–2008), president (2008–2010), and faculty liaison (2010–2011) of the
PSU Biology Graduate Student Association. In 2009, she organized an Ecological Society
of America symposium “How Can Soil Microbial Ecology Contribute to the Sustainability
of Agricultural Systems?” and was an organizer for the 2010 Evolution annual meeting
in Portland, Oregon. In 2011, she served on the Student Advisory Panel for the EPA STAR
Conference and was an organizer and moderator for the Recruitment and Retention of
Underrepresented Students session in Washington, DC. In 2009, she was awarded the
PSU President’s Award for Outstanding University Service for her mentoring and leader-
ship services and was awarded Best Student Oral Presentation at the 2009 ESA annual
meeting in Albuquerque, New Mexico. She has given numerous talks at scientific confer-
ences and has received multiple grants and awards for her research and outreach activi-
ties. After earning her PhD, she hopes to become a university professor in the biological
sciences. Her research interests include soil ecology, agroecology, climate change, and
biotech risk assessment.
David C. Coleman has been a lifelong soil ecologist with interests in soil biodiversity and
biogeochemical cycling. He conducted research at the Savannah River Ecology Laboratory
of the University of Georgia (1965–1971) and the Natural Resource Ecology Laboratory,
Colorado State University (1972–1985), and from 1985 has been at the University of Georgia
in the Institute of Ecology and later the Odum School of Ecology. He served as distin-
guished research professor of ecology from 1985 onward and has been a professor emeri-
tus since 2005.
     David received the Distinguished Service award from the Soil Ecology Society in 1999
and the Distinguished Ecosystem Scientist award from the Natural Resource Ecology
Laboratory in 2000. He served as co-chief editor of Soil Biology and Biochemistry from 1998
to 2010 and serves on the editorial boards of several other soil biology journals. He has pub-
lished over 285 refereed journal articles and books and is senior author of Fundamentals of
Soil Ecology (second edition, 2004) and the author of Big Ecology: The Emergence of Ecosystem
Science (2010).
                                                                                           xv
xvi                                                                        About the Editors
    He received his master’s and PhD degrees from the University of Oregon and spent a
postdoctoral year with Professor Amyan Macfadyen at the University of Wales, Swansea,
United Kingdom.
                                                                                     xvii
xviii                                                               Contributors
David C. Coleman
University of Georgia
John C. Moore
Colorado State University
                                                                  Contents
1.1  Introduction.............................................................................................................................1
1.2  Studies of organic matter dynamics....................................................................................3
     1.2.1 The origins of organic material................................................................................4
     1.2.2 The importance of litter quality and nutrients.......................................................6
     1.2.3 The importance of aggregate formation in soils....................................................7
     1.2.4 The roles of soil microbes and invertebrates..........................................................7
1.3 An integrative framework.....................................................................................................8
1.4 High-priority topics on detrital dynamics of concern to land managers..................... 11
     1.4.1 Biodiversity in agricultural and agroforestry systems....................................... 11
     1.4.2 Changes in land use and impacts on detrital food webs.................................... 15
1.5 Conclusions............................................................................................................................ 15
References........................................................................................................................................ 16
1.1 Introduction
Soil organic matter (SOM) is a complex of many organic molecules of varied forms, repre-
senting one of the more important components of detritus in terrestrial ecosystems. The
maintenance and rehabilitation of SOM are considered to be desirable goals in agroeco-
systems (Coleman et al., 1984, 1994; Bossuyt et al., 2002). SOM maintains soil structural
stability and enhances water-holding capacity, soil fertility, and crop production, ensuring
long-term agricultural ecosystem stability (Hassink et al., 1997; Denef et al., 2004). For these
reasons, the impacts of agricultural practices on detritus in general through SOM are the
focus of this chapter.
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