Microbiology With Diseases by Taxonomy 5th Edition, (Ebook PDF) Latest PDF 2025
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»
» NEW! The Scientific Method
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» Acid-Fast Staining
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» Safety in the Microbiology Laboratory
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Authorized adaptation from the United States edition, entitled Microbiology with Diseases by Taxonomy, 5th edition,
ISBN 978-0-13-401919-2, by Robert W. Bauman published by Pearson Education © 2017.
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10 9 8 7 6 5 4 3 2 1
• NEW Disease in Depth features highlight important and representative diseases for each body
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Glance features. Each of these 11 visual features contains infographics, provides i n-depth cover-
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dents to a Video Tutor exploring the topic and prompting further inquiry and critical thinking.
12
Preface 13
• NEW Video Tutors developed and narrated by the author walk students through key con-
cepts. New to this edition are Video Tutors on glycolysis, protein translation, and antigen
processing. These Video Tutors bring the textbook art to life and help students visualize and
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via QR codes in the textbook and are accompanied by multiple-choice questions, assignable
in MasteringMicrobiology®.
• NEW Tell Me Why critical thinking questions end every main section within each chapter.
These questions strengthen the pedagogy and organization of each chapter and consistently
provide stop-and-think opportunities for students as they read.
• The genetics chapters (Chapters 7–8) have been reviewed and revised by genetics special-
ists. These now reflect the most current understanding of this rapidly evolving field, includ-
ing new discussion of next-generation DNA sequencing.
• Over 330 NEW and revised micrographs, photos, and figures enhance student under-
standing of the text and boxed features.
MasteringMicrobiology offers students access to Dynamic Study Modules to help them acquire,
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The following section provides a detailed outline of this edition’s chapter-by-chapter revisions.
Chapter-by-Chapter Revisions
• Expanded table comparing and contrasting DNA replication, • Revised seven figures for greater clarity, accuracy, ease of reading,
transcription, and translation and better pedagogy (Figs. 10.2, 10.3, 10.6, 10.8, 10.13, 10.15; map of
• Discussed codon and tRNA for 21st amino acid, selenocysteine worldwide, community-associated MRSA)
• Enhanced and clarified discussion of lac and trp operons and of the • Three new photos (Highlight, Fig. 10.10, Clinical Case Study)
action of cAMP and CAP as activators • Added three critical thinking questions to Emerging Disease Case
• Expanded and reorganized discussion of DNA repair systems Study: Community-Associated MRSA and updated map with
• Clarified and updated information on the events in conjugation, newly published data
particularly with Hfr cells
• Expanded coverage of nucleotides and pyrophosphate (diphosphate) Chapter 11 Characterizing and Classifying
• Added critical thinking questions to Emerging Disease Case Study: Prokaryotes
Vibrio vulnificus Infection • Added four Tell Me Why critical thinking questions to text
• Revised the chapter to better explain differences between archaeal, • Six new Learning Outcomes (for proteobacteria, including newly
bacterial, and eukaryotic genetics discovered zetaproteobacteria)
• Added fill-in Concept Map over point mutations • Thirteen new photos (Figs. 11.1, 11.2a, 11.5, 11.7, 11.11a, 11.16, 11.17,
11.19, 11.21, 11.22, 11.23, 11.24b, 11.27b)
Chapter 8 Recombinant DNA Technology • Ten revised figures for better pedagogy (Figs. 11.1, 11.3, 11.4, 11.6,
• Added five Tell Me Why critical thinking questions to text 11.10, 11.14, 11.17, 11.21, 11.26, 11.27)
• Added six Learning Outcomes concerning uses of synthetic nucleic • Clarified and expanded coverage of (1) “snapping division,”
acids, PCR, fluorescent in situ hybridization (FISH), functional which is a distinctive characteristic of corynebacteria, i ncluding C.
genomics, Sanger sequencing, and next-generation sequencing diphtheriae, (2) floc formation and its use in s ewage treatment, and
• Added one new figure (Fig. 8.10) (3) methicillin-resistant strains of Staphylococcus aureus
• Modified Fig. 8.7 for better pedagogy • Updated with new discoveries in bacterial and archaeal
• Deleted figures for Southern blots and Sanger automated DNA systematics: six classes of proteobacteria rather than four and five
sequencing as these techniques are historical and less-commonly phyla of archaea (rather than two)
used today • Removed box on Botox and box on the possible link between
• Added discussion of real-time PCR (RT-PCR), Sanger sequencing cyanobacteria and brain disease to make room for new material
methods, next-generation DNA sequencing (NGS), including • Three new critical thinking questions over pertussis as a
pyrosequencing and fluorescent methods, functional genomics, reemerging disease
microbiomes, and biomedical animal models • Added fill-in Concept Map over domain Archaea
• New Highlight boxes: How Do You Fix a Mosquito? on controlling
dengue and The Human Microbiome Project Chapter 12 Characterizing and Classifying
Eukaryotes
Chapter 9 Controlling Microbial Growth in the • Added six Tell Me Why critical thinking questions to text
Environment • Eight new photos (Figs. 12.11, 12.12a and b, 12.13c, 12.14, 12.20,
• Added four Tell Me Why critical thinking questions to text 12.25, 12.27)
• Revised five figures for better accuracy, currency, and pedagogy • Seven revised figures for more accurate and lucid pedagogy
(Figs. 9.2, 9.7, 9.13, 9.15, 9.16) (Figs. 12.1, 12.3, 12.7, 12.8, 12.17, 12.23; map for aspergillosis)
• Two new photos (Fig. 9.9, Beneficial Microbes) • As reviewers requested, shortened chapter by eliminating detailed
• Updated techniques for deactivation of prions, coverage of discussion and artwork of ciliate (Paramecium) conjugation
thimerosal in vaccines, and activity of AOAC International in and of sexual reproduction by zygomycetes, ascomycetes, and
developing disinfection standards basidiomycetes
• Added three critical thinking questions to Emerging Disease Case • Updated algal, fungal, protozoan, water mold, and slime mold
Study: Acanthamoeba Keratitis taxonomy
• Added critical thinking question concerning salmonellosis • Clarified and expanded coverage of (1) meiosis, (2) alveoli in
pandemic from smoked salmon protists, and (3) use of radiation as an energy source for some fungi
• Added fill-in Concept Map over moist heat applications to control • Added new critical thinking questions: three about the emerging
microbes disease aspergillosis and two at end of chapter about genomics in
relationship to metabolism in various environments
Chapter 10 Controlling Microbial Growth in the • Added fill-in Concept Map over eukaryotic microorganisms
Body: Antimicrobial Drugs
• Added four Tell Me Why critical thinking questions to text Chapter 13 Characterizing and Classifying Viruses,
• Updated and revised tables of antimicrobials to include all Viroids, and Prions
new antimicrobials mentioned in disease chapters, including • Added four Tell Me Why critical thinking questions to text
carbapenems and capreomycin (antibacterials); enfuvirtide (newly • Four new photos (Figs. 13.1b, 13.21, 13.24; bacteriophage box)
approved anti-HIV-1); ciclopirox (antifungal); and bithionol • Upgraded eight figures for better pedagogy and currency (Figs.
(anthelmintic); updated sources of drugs, modes of action, clinical 13.5, 13.8, 13.12, 13.13, 13.14, 13.16, 13.18, 13.22)
considerations, and methods of resistance • One new figure showing prion templating (Fig. 13.23)
• Updated adverse effects of aminoglycosides • Two new Learning Outcomes concerning (1) structures of viruses
• Updated the mechanism of resistance against quinolone and (2) control of prions
antibacterial drugs • Updated viral nomenclature to correspond to changes approved by
• Removed amantadine as a treatment for influenza A the International Committee on Taxonomy of V iruses (ICTV) in 2014
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16 Chapter-by-Chapter Revisions
• Added discussion on the benefits and costs to a virus of having an • Revised five figures for better pedagogy (Figs. 17.2, 17.3, 17.6,
envelope versus being naked 17.11, 17.14)
• Clarified and expanded text concerning lytic cycle of phage
replication; use of phage typing; replication of animal viruses, Chapter 18 Hypersensitivities, Autoimmune Diseases,
particularly ssDNA viruses; link between viruses and human and Immune Deficiencies
cancers; viroids; and prions • Added three Tell Me Why critical thinking questions to text
• Updated techniques for deactivation of prions and treatment of • Revised one figure for greater clarity and accuracy (Fig. 18.7)
prion disease • Expanded coverage of type III hypersensitivity, the relationship
• Updated Emerging Disease Case Study: Chikungunya; added three between hypersensitivities and autoimmune disorders
critical thinking questions to the discussion • Removed figure and text for a very rare disease, immune throm
bocytopenic purpura, to make room for new material in
Chapter 14 Infection, Infectious Diseases, and Chapter 19
Epidemiology
• Added eight Tell Me Why critical thinking questions to text Chapter 19 Pathogenic Gram-Positive Bacteria
• Changed eight figures for better pedagogy, timeliness, or clarity • Added nine Tell Me Why critical thinking questions to text
(Figs. 14.3, 14.4, 14.5, 14.9, 14.10, 14.14, 14.16, 14.20) • Added three Disease in Depth visual presentations of disease:
• Revised and updated coverage of (1) number of human cells in a necrotizing fasciitis, listeriosis, and tuberculosis
body and the number of cellular microbiota, (2) microbiome, and • Twenty-five new photos (Figs. 19.1, 19.12, 19.17, 19.19, 19.20, 19.21)
(3) symbioses (added terms symbiont and amensalism) • Seven revisions to figures for consistency, currency, accuracy, and
• Updated to replace term nosocomial with healthcare-associated (in all better pedagogy (Figs. 19.5, 19.23; Disease in Depth: Necrottizing
chapters) Fasciitis, Listeriosis, and Tuberculosis; Microbe at a Glance:
• Updated epidemiology charts, tables, and graphs Streptococcus and Clostridium)
• Updated list of nationally notifiable infectious diseases • Updated all diagnoses and incidence data
• Three new critical thinking questions added to the d iscussion of • Revised two Learning Outcomes for better pedagogy (19.10, 19.13)
Hantavirus as an emerging disease • Revised Chapter Summary for better pedagogy (for Staphylococcus;
• Added fill-in Concept Map over transmission of diseases Streptococcus; Enterococcus, Bacillus; Clostridium; Listeria; Mycoplasma;
Corynebacterium; Mycobacterium)
Chapter 15 Innate Immunity • Updated definitions for multi-drug-resistant (MDR) and
• Added two Tell Me Why critical thinking questions to text extensively drug-resistant (XDR) tuberculosis
• Modified nine figures for enhanced clarity and better pedagogy • Updated treatment regimen for inhalation anthrax, bioterrorist
(Figs. 15.4, 15.6, 15.7, 15.8, 15.9, 15.11, 15.12, 15.13, 15.14) anthrax, botulism, tetanus, listeriosis, m
ycoplasmal p neumonia,
• Three new photos (Figs. 15.1, 15.5b) nongonococcal urethritis, and tuberculosis
• Updated and expanded coverage of the action of antimicrobial • Updated and enhanced discussion of mycolic acids, role of
peptides (defensins), Toll-like receptor 10 (TLR10), complement Streptococcus mutans in tooth decay, and anthrax vaccine
activation, complement cascade, and membrane attack complexes • Added a figure question regarding snapping division in
• Expanded and clarified discussion of inflammatory mediators corynebacteria
• Added three critical thinking questions and updated incidence
Chapter 16 Specific Defense: Adaptive Immunity maps for the discussion of Buruli ulcer
• Added three Tell Me Why critical thinking questions to text • Added Clinical Case Study regarding tuberculosis
• Revised and clarified (1) function and structure of tonsils, (2) flow
of lymph, and (3) mucosa-associated lymphoid tissue Chapter 20 Pathogenic Gram-Negative Cocci
• Reordered the discussion of topics in adaptive immunity to better and Bacilli
align with the way events occur; for example, MHC and antigen • Added three Tell Me Why critical thinking questions to text
processing are discussed before T cells and cell-mediated immunity, • Added one Disease in Depth visual presentation of disease on
which are discussed before B cells and antibody-mediated immunity urinary tract infections
• Removed discussion of T-independent antibody immunity as it was • Updated all diagnoses and incidence data, including maps
too advanced for beginning students • Updated to replace term nosocomial with healthcare-associated
• Revised three pieces of art for enhanced pedagogy (Figs. 16.2, 16.3, • Revised Chapter Summary for better pedagogy (Pathogenic, Gram-
16.10) Negative, Facultatively Anaerobic Bacilli; Pathogenic, Gram-Negative,
• Added three critical thinking questions and updated incidence map Aerobic Bacilli; Pathogenic, Gram-Negative, Anaerobic Bacilli)
for the discussion of microsporidiosis • Updated treatment regimen for gonorrhea, meningococcus
• Added fill-in Concept Map over antibodies meningitis, bubonic plague, bartonellosis, brucellosis, and
Legionnaires’ disease
Chapter 17 Immunization and Immune Testing • Added one new figure (Fig. 20.1) and figure question on the
• Added a Tell Me Why critical thinking question to text potential effects of lipid A
• Updated to newly revised CDC 2015 vaccination schedule for • Revised nine figures for better pedagogy (Microbe at a Glance:
children, adolescents, and adults Neisseria gonorrhoeae; Figs. 20.2, 20.3, 20.14, 20.18, 20.19, 20.22,
• Updated table of vaccine-preventable diseases in the United States 20.23, 20.28)
• Enhanced discussion of development of attenuated viral vaccines • Added three critical thinking questions and updated incidence
• Added two points to chapter summary about recombinant gene maps for the discussion of melioidosis
technology and vaccine production and about vaccine safety
Chapter-by-Chapter Revisions 17
Chapter 21 Rickettsias, Chlamydias, Spirochetes, • Eight revised, updated, enhanced, and pedagogically more effective
and Vibrios figures (Figs. 23.1, 23.3, 23.5, 23.6, 23.9, 23.14, 23.17, 23.24)
• Added three Tell Me Why critical thinking questions to text • Added three critical thinking questions and updated incidence
• New Disease in Depth: Spotted Fever Rickettsiosis maps for the discussions of babesiosis and of schistosomiasis
• Updated all diagnoses and incidence data • Added fill-in Concept Map over intestinal protozoan parasites
• Modified/updated nine figures (Figs. 21.1, 21.2, 21.3, 21.5, 21.8,
21.12, 21.13, 21.17, 21.20) Chapter 24 Pathogenic DNA Viruses
• Two new photos (Figs. 21.11, 21.19) • Added five Tell Me Why critical thinking questions to text
• Updated treatment regimen for rickettsial spotted fever (Rocky • Updated all diagnoses and incidence data
Mountain spotted fever, RMSF), murine typhus, scrub typhus, • Updated treatment regimen for shingles, history of smallpox
human monocytic ehrlichiosis, anaplasmosis (formerly called vaccination, and the effect of adenovirus 36 on obesity
human granulocytic ehrlichiosis), lymphogranuloma venereum, • Four new photos (Figs. 24.3, 24.15, 24.16c, 24.22)
trachoma, cholera, and gastric ulcers • Reformatted one figure for better pedagogy (Fig. 24.21)
• Updated and expanded coverage of epidemic typhus, murine • Added three critical thinking questions and updated incidence
typhus, scrub typhus, spotted fever rickettsioses (RMSF), maps for the discussion of monkeypox
ehrlichiosis, anaplasmosis, lymphogranuloma venereum, urethritis, • New Disease in Depth: Papillomas with three new photos and three
yaws, Borrelia, and cholera new figures
Denice D. King
Book Reviewers Cleveland State Community College
Christopher Thompson
Loyola University, Maryland
Dena Berg Todd Martin Marie N. Yearling
Tarrant County College Metropolitan Community College, Laramie County Community College
Carroll Bottoms Blue River
Collin College Jennifer Metzler
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18
Acknowledgments
As has been the case with all previous editions, I am ever more Thanks to Michéle Shuster and Amy Helms for their work on
cognizant that this book is a team effort. I am deeply grateful the media and print supplements for this edition. Special thanks
once again to Kelsey Churchman of Pearson Science and to the are due to Lauren Beebe and Andrea Stefanowicz for managing
team she gathered to produce the fifth edition. Kelsey, dedicated the supplements, to Kyle Doctor in production for his work on
project manager Lauren Beebe, and invaluable program the Instructor’s Resource DVD, and to Joe Mochnick for his
manager Chriscelle Palaganas helped develop the vision for management of the extraordinary array of media resources for
this fifth edition, generating ideas to make it more effective and students and instructors, especially MasteringMicrobiology®.
compelling. As project manager, Lauren also had the unenviable Thanks also to Jordan Roeder, RN, and Nan Kemp and for
task of coordinating everything and keeping me on track—thank their administrative, editorial, and research assistance. I am
you, Lauren, for being understanding, patient, and lenient, grateful to Neena Bali and now Lauren Harp in Marketing; they
especially when I misplaced a deadline. Kari Hopperstead was lead the amazing Pearson sales representatives to do a terrific
invaluable in developmental editing. I am grateful. job of keeping in touch with the professors and students who
provide so many wonderful suggestions for this textbook. As
Thank you to Barbara Yien, project editor of the first two always, I am humbled, inspired, and encouraged by the sales
editions, for years of support and for introducing me to representatives; your role on the team deserves more gratitude
chocolate truffles. I am excited for your growing family and than I can express here or with citrus fruit.
new responsibilities! I am grateful to Frank Ruggirello for his
unflagging encouragement and support of my work and this I am especially grateful to Phil Mixter of Washington State
book; enjoy your new adventures! I am also indebted to Daryl University, Mary Jane Niles of the University of San Francisco,
Fox, whose early support for this book never wavered. Bronwen Steele of Estrella Mountain Community College, Jan
Miller of American River College, and Jane Reece for their
Anita Wagner Hueftle—the eagle-eyed—edited the manuscript expertise and advice.
thoroughly and meticulously, suggesting important changes
for clarity, accuracy, and consistency. The incomparable Kelly I am further indebted to Sam Schwarzlose for his excellent work
Murphy did a magnificently superb job as art development on the Video Tutor assessments and to Terry Austin for lending
editor, helping to conceptualize new illustrations and suggesting his technical expertise to the project.
ways to improve the art overall—thank you, Kelly for taking the
original art of my friend Ken Probst and enhancing this book’s On the home front: Thank you, Jennie and Nick Knapp,
amazingly beautiful biological illustrations. My thanks to Elizabeth Bauman, Jeremy Bauman, Larry Latham, Josh Wood,
Lachina for rendering the art in this edition. Andrea Stefanowicz and Mike Isley. You keep me even-keeled. My wife Michelle
and Lumina Datamatics expertly guided the project through deserves more recognition than I can possibly express: “Many
production. Andrea, thank you for meticulously improving the are noble, but you excel them all.” Thank you.
text. Maureen “Mo” Spuhler remains the most amazing photo
Robert W. Bauman
researcher. I am in your debt, “Molybdenum.” Rich Robison
Amarillo, Texas
and Brent Selinger supplied many of the text’s wonderful and
unique micrographs. Emily Friel created the beautiful interior
design and the stunning cover.
The publishers would like to thank the following for contributing to and reviewing the Global Edition:
Dhriti Bhattacharyya
Sumitra Datta
Amity University Kolkata
Rajeev Kaul
University of Delhi
Gopalakrishnan Menon
Tomsk State University
19
Table of Contents
1
Acids and Bases 66
Salts 68
Organic Macromolecules 68
A Brief Functional Groups 69
Lipids 70
History of Carbohydrates 72
Proteins 74
Microbiology 31 Nucleotides and Nucleic Acids 78
The Early Years of Chapter Summary 81 • Questions for Review 82
Microbiology 32 Critical Thinking 83 • Concept Mapping 84
What Does Life Really Look
Like? 32
3
How Can Microbes Be
Classified? 33
The Golden Age of Microbiology 37
Does Microbial Life Spontaneously Generate? 37
What Causes Fermentation? 40
Cell Structure and
What Causes Disease? 41
How Can We Prevent Infection and Disease? 45
Function 85
The Modern Age of Microbiology 48 Processes of Life 86
What Are the Basic Chemical Reactions of Life? 48 Prokaryotic and Eukaryotic
How Do Genes Work? 48 Cells: An Overview 87
What Roles Do Microorganisms Play in the Environment? 50 External Structures of Bacterial
How Do We Defend Against Disease? 50 Cells 89
What Will the Future Hold? 51 Glycocalyces 89
Chapter Summary 52 • Questions for Review 52
Flagella 89
Critical Thinking 54 • Concept Mapping 55 Fimbriae and Pili 92
Bacterial Cell Walls 93
2
Gram-Positive Bacterial Cell Walls 94
Gram-Negative Bacterial Cell Walls 96
Bacteria Without Cell Walls 96
Bacterial Cytoplasmic Membranes 96
The Chemistry of Structure 96
Microbiology 56 Function 97
Cytoplasm of Bacteria 102
Atoms 57 Cytosol 102
Atomic Structure 57 Inclusions 102
Isotopes 57 Endospores 103
Electron Configurations 58 Nonmembranous Organelles 104
Chemical Bonds 60 External Structures of Archaea 104
Nonpolar Covalent Bonds 60 Glycocalyces 105
Polar Covalent Bonds 61 Flagella 105
Ionic Bonds 62 Fimbriae and Hami 105
Hydrogen Bonds 63 Archaeal Cell Walls and Cytoplasmic Membranes 106
Chemical Reactions 64 Cytoplasm of Archaea 106
Synthesis Reactions 64
External Structure of Eukaryotic Cells 107
Decomposition Reactions 64
Exchange Reactions 65 Glycocalyces 107
Water, Acids, Bases, and Salts 65 Eukaryotic Cell Walls and Cytoplasmic Membranes 107
Water 65
20
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