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Methods in Molecular Biology TM
VOLUME 151
Matrix
Metalloproteinase
Protocols
Edited by
Ian M. Clark
HUMANA PRESS
MMPs and TIMPs – An Historical Perspective 1
1
MMPs and TIMPs
An Historical Perspective
1. Introduction
The matrix metalloproteinase field has a clearly defined starting point, the
seminal study of Jerome Gross and Charles Lapière in 1962 (1) in which frag-
ments of resorbing tadpole tail were cultured on reconstituted collagen gels. A
collagenolytic enzyme was recovered from the culture medium which could
attack native collagen fibrils. Within a short time these studies were extended
to show a similar activity in a wide variety of tissues, that the collagen mol-
ecule was cut into 3/4- and 1/4-length fragments, and that the enzyme activity
was dependent on metal ions. The tissue inhibitors of metalloproteinases were
discovered in the following decade in tissue culture (2) and serum (3). It was
soon recognized that the matrix metalloproteinases (MMPs) are involved in a
great many processes of normal development and growth and in pathological
processes such as arthritis and cancer metastasis as tabulated in Woessner, 1998
(4). This has resulted in a tremendous outpouring of studies now numbering
about 10,000 references with 1,000 appearing each year. There have been many
recent reviews of the MMPs, including an entire book—Matrix Metallopro-
teinases—edited by Parks and Mecham (5) (1998) and detailed chapters in The
Handbook of Proteolytic Enzymes (6) and Methods of Enzymology Vol. 248
(7). These will be cited at appropriate points below.
There are now at least 18 distinct vertebrate MMPs. This group was
originally defined on the basis of dependence on zinc for catalytic activity
and the presence of a large propeptide responsible for latency. The recognition
of other enzymes with such properties (e.g., reprolysins) has led to the defini-
tion of the group on the basis of DNA sequence. As outlined in the Handbook
From: Methods in Molecular Biology, vol. 151: Matrix Metalloproteinase Protocols
Edited by: I. Clark © Humana Press Inc., Totowa, NJ
1
2 Woessner
of Proteolytic Enzymes (6) pp. 1144 – 1147, the matrixin subfamily and the
serralysin subfamily are grouped together in family M10 of the metal-
loproteinase clan MB. The closely related family M12 contains the astacins
and the reprolysins. The close relationship is not in the sequence but in the
protein fold—the so-called metzincin fold (8). Of these 4 subgroups, only the
MMP subfamily is inhibited by tissue inhibitor of metalloproteinases (TIMPs),
whereas all members are susceptible to hydroxamate inhibitors originally
developed for the MMPs.
Table 1 lists the currently known MMPs and related forms from lower organ-
isms. The MMPs have a very wide range of domains and segments that can be
added to the basic core found in matrilysin: the propeptide and catalytic domains.
These may be selected from the furin cleavage site RXKR, the fibronectin-like
repeats, the hinge region, the hemopexin domain and the transmembrane domain.
Chapter 4 provides more detail about the size and functions of the various
domains and inserts. One consequence of these variations is that the MMPs may
range in Mr from 105,000 for the largest proenzyme to 19,000 for the smallest
active enzymes. There are three web sites that provide useful data about the
MMPs. Neil Rawlings and Alan Barrett maintain a site named MEROPS that
gives detailed information about each proteolytic enzyme; it is found at http://
www.bi.bbsrc.ac.uk/MEROPS/. Those enzymes that are listed in the Enzyme
Commission list (see Table 1) can be found at http://alpha.qmw.ac.uk/~ugca000/
iubmb/enzyme/. Finally, each MMP that has been sequenced can be found
by name and animal species in the SwissProt protease databank at http://
expasy.hcuge.ch/sprot/sprot-top.html.
Table 1
The Matrix Metalloproteinases
MMP-No. Name E.C. number Other names/notes
mouse tumor cells (21), rabbit bone (22), and human gingiva (23). The com-
plete sequence of the human enzyme except for the signal peptide was reported
by Collier et al. (24). Gelatinase A has a triple repeat of fibronectin type II
domains inserted in the catalytic domain; these participate in binding to the
gelatin substrates of the enzyme (25). Recent reviews of gelatinase A are found
in (26–28).
2.3. Stromelysin 1 (MMP-3)
A neutral proteinase distinct from collagenase was first noted in 1974 by
Sapolsky et al. in human cartilage (29) and Werb and Reynolds in rabbit bone
fibroblast culture (30). The enzyme was metal-dependent and lost about 20,000
Daltons upon activation of the latent form (31). Purification of the rabbit bone
enzyme (32) permitted its detailed characterization and it was referred to as
proteoglycanase. The name ‘stromelysin’ was introduced by Chin et al. (33)
but the enzyme has also been named transin (34) and collagenase activating
protein (35). The first cDNA sequence was obtained for rat transin in 1985
(34). Recent reviews are found in (36–38).
2.4. The Missing Enzymes (MMP-4, -5, and -6)
These three enzymes were given numbers soon after their discovery, but
it was subsequently determined that they were identical to other known MMPs.
MMP-4 or collagen telopeptidase was described by Scott in 1983 in pig and
human gingival extracts (39,40). Nakano et al. (41) proposed the name MMP-4
for the human enzyme that removes the C-telopeptides from type I collagen. The
subsequent demonstration that stromelysin cleaves the N-telopeptide, and prob-
ably the C-telopeptide (42), from type II collagen suggested that MMP-4 was
actually MMP-3. It is possible that MMP-13 may have been involved as well.
Overall and Sodek (43) described a 3/4-collagenase that acted on fragments
of type I collagen produced by MMP-1. However, this was subsequently iden-
tified as MMP-2 (44). Sapolsky et al. (45) extracted an aggrecan-degrading
activity from human cartilage with an acid pH optimum of 5.5. This activity
was purified (46) and shown to increase in osteoarthritis (47). However, it was
subsequently demonstrated (48,49) that this acid pH optimum was actually a
property of MMP-3.
2.5. Matrilysin (MMP-7)
Matrilysin is the smallest of the MMPs, having only the propeptide and cata-
lytic domains. It was first identified in the postpartum involuting uterus of the
rat by Sellers and Woessner in 1980 (50). However, it was not until 1988 that
the enzyme was purified and characterized from rat uterus (51) and cloned and
MMPs and TIMPs – An Historical Perspective 5
sequenced from a human library (52). Expression of the human cDNA estab-
lished that this enzyme, up until then known as putative matrix metal-
loproteinase or Pump-1, was a protease with properties similar to the rat
enzyme (53). The enzyme was also independently discovered as the kidney
activator of urokinase (54). Reviews of the enzyme and its properties may be
found in (55–57).
2.6. Neutrophil Collagenase (MMP-8, Collagenase 2)
A collagenase activity from human neutrophils was first reported by Lazarus
et al. in 1968 (58,59). This could be activated by a factor in synovial fluid (60).
The enzyme was located in the specific granules (61) and released upon phago-
cytosis (62). The enzyme was first purified in 1983 (63) and shown to be a
distinct gene product from MMP-1 by antibody reaction (64). Cloning and
sequencing was accomplished in 1990 (65). Review articles are found in
(16,66,67). An early and lengthy series of papers in the 1970s purporting to
describe neutrophil collagenase were finally shown by Ohlsson to refer to a
serine enzyme and not to MMP-8 (68).
2.7. Gelatinase B (MMP-9, Type V Collagenase)
Harris and Krane in 1972 (69) detected a gelatinase activity in rheumatoid
synovial fluid. In retrospect this is likely to have been MMP-9. Sopata et al.
(70) described a gelatinase from human polymorphonuclear leukocytes. This
was shown to be latent and activated by organomercurials (71). Rabbit mac-
rophages produce a very similar enzyme which is able to digest type V col-
lagen (72). The neutrophil collagenase and gelatinase were resolved in 1980
(73). Purification was achieved in 1983 (74) and sequencing of the cDNA in
1989 (75). An interesting phenomenon, still not fully understood, is the bind-
ing of TIMP-1 to proMMP-9 to form a complex that further regulates the
activation and subsequent activity of the enzyme (76). Human neutrophil
MMP-9 commonly occurs as a complex with lipocalin (77). A series of papers
concerning a 95 kDa protein in plasma that binds to gelatin culminated in the
identification of this protein as MMP-9 (78).
2.8. Stromelysin 2 (MMP-10, Transin 2)
This is the first of the MMPs to be discovered by cloning and sequencing,
in this case as rat transin 2 (79), which indicated an enzyme 71% identical to
transin 1 (MMP-3) This was soon followed by the cloning of the human enzyme
(52). Both the rat and human forms were shown to have proteolytic activity
when they were expressed (80); they were inhibited by TIMP and activated
latent proMMP-1. Review articles are found in (36,38,81).
6 Woessner
hemopexin domain; this enzyme could activate proMMP-2 also bound to the
cell surface. Further cloning and sequencing of the human enzyme followed
shortly in 3 labs (103–105). The early reports used the nomenclature MT-
MMP-1, however, this proved very confusing as many thought it meant
MMP-1 (i.e., collagenase) inserted in the membrane. Reviews of this enzyme
are found in (106,107).
ing (157). As with TIMP-1, there have been several re-discoveries based on
growth effects. Thus, a mouse factor that promoted survival of pituitary cells
in culture proved to have the sequence of TIMP-2 (158) as did an autocrine
factor that stimulated SV-40 transformed human fibroblasts (159). A factor
stimulating osteosarcoma cells also proved to be TIMP-2 (160). As in the case
of TIMP-1, it is unlikely that these effects can all be explained on the basis of
blocking proteolysis. A review of TIMP-1 and TIMP-2, particularly with
respect to their assay, is presented in (161).
3.3. Tissue Inhibitor of Metalloproteinase 3 (TIMP-3)
Blenis and Hawkes in 1983 (162) found expression of a protein in the extra-
cellular matrix produced by transformed chick embryo fibroblast cells. This
protein of Mr 21,000 binds tightly to the matrix (163) but was not identified as
a TIMP until 7 years later (164). The name assigned to the protein based on
cDNA sequence was ChiMP-3 (165). The human and mouse TIMP-3 clones
were sequenced by Apte and colleagues (166,167). Considerable interest has
been aroused by the discovery that Sorsby’s fundus dystrophy involves muta-
tions in this protein (168).
3.4. Tissue Inhibitor of Metalloproteinases 4 (TIMP-4)
This inhibitor was first identified upon cloning (169), mRNA was seen in heart
but was low in kidney, placenta, colon, and testes and absent in many other tissues.
TIMP-4 is similar to TIMP-2 in its ability to bind to proMMP-2 (170). The mouse
and rat proteins have also been sequenced (171,172). Expressed TIMP-4 has been
shown to inhibit at least MMP-1, -2, -3, -7, and -9. In general, most TIMPs appear
to be able to inhibit most active MMPs, but there are considerable differences in
binding affinities. An overview of homologies among 17 species of the 4 TIMPs is
presented in (173).
4. Conclusion
MMPs continue to be discovered. Highly specialized MMPs such as
enamelysin, found only in the embryonic tooth enamel may have corre-
sponding undiscovered counterparts in other tissues or organs. The human
genome project will no doubt uncover further examples. In the case of TIMPs,
there is an example from the C. elegans sequence of a TIMP that seems to
consist solely of the N-terminal inhibitory domain. Similar inhibitors might
exist in higher organisms. There have been several reports of small IMPs, below
the size of TIMP, seen on zymograms (174).
A great deal still remains to be learned about the MMPs and their inhibition.
We know almost nothing about the natural substrates of the MMPs in vivo,
about how the cell senses and regulates the level of enzymes and inhibitors out
MMPs and TIMPs – An Historical Perspective 11
in the matrix, and about the ability of the cell to substitute one enzyme for
another in knockouts. The clear involvement of the MMPs in the major disease
processes of cancer, cardiovascular disease, and arthritis suggests that there
will be significant funding for research on these enzymes. Attention will no
doubt focus on ways to regulate the activities through gene manipulation and
through specific inhibitors of enzyme expression or activity.
Acknowledgment
Supported by NIH Grant AR-16940.
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MMPs and TIMPs – An Historical Perspective 17
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