Hemmerich bosc2010 isga_ergatis
1 like633 views
This document summarizes automated annotation of next-generation sequencing (NGS) transcriptome data using ISGA and Ergatis. ISGA is a biologist's tool for running and customizing Ergatis pipelines previously designed by experts. The transcriptome pipeline runs in Ergatis and annotates transcriptome data with tools like BLAST, gene prediction, and functional annotation. The pipeline is being optimized for performance and additional functionality.
![Infrastrutture prioritarie __calabria[1]](https://cdn.slidesharecdn.com/ss_thumbnails/infrastruttureprioritariecalabria1-100718174321-phpapp02-thumbnail.jpg?width=560&fit=bounds)
![Introductiedag 11 12 [compatibiliteitsmodus]](https://cdn.slidesharecdn.com/ss_thumbnails/introductiedag11-12compatibiliteitsmodus-110908091809-phpapp01-thumbnail.jpg?width=560&fit=bounds)
Hemmerich bosc2010 isga_ergatis
- 1. AUTOMATED ANNOTATION OF NGS TRANSCRIPTOME DATA USING ISGA AND ERGATIS Chris Hemmerich Center for Genomics and Bioinformatics Indiana University, Bloomington, Indiana
- 2. Keeping up with next-generation sequencing data requires the use of automated analysis pipelines!
- 3. Ergatis is a(n awesome) workflow management tool for designing and running such pipelines! http://ergatis.sourceforge.net/! Ergatis: A web interface and scalable software system for bioinformatics workflows! Orvis et al. (2010) Bioinformatics !
- 4. ISGA is a Biologistʼs tool for running and customizing Ergatis pipelines previously designed by experts! http://isga.cgb.indiana.edu/! An Ergatis-based prokaryotic genome annotation web server! Chris Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Revanna & Qunfeng Dong, (2010) Bioinformatics!
- 8. INTEGRATIVE SERVICES FOR GENOMIC ANALYSIS Account system protects user data and enables easy retrieval of previous results Integrated visualization, query, and analysis tools to explore pipeline results File upload and download managed through browser ISGA pipelines can be run in Ergatis
- 9. TRANSCRIPTOME PIPELINE !"#$%&"'()*+,-.,/0,$&,- .,/0,$&,-60#2')7-8'2),"- 9?@.!<- 9?@.!<- 9?@.!A- <=9>-$"- 12'3*4'&5,"- IJK.!- .,2L- 9?@.!4- 4H1.>!K-.=@<- 1H84",I'&)*"- 92#%):;1- !9?@.!<- !#D*$*+7- 1")M*F=?NO9- EF,3#$G- ?'(*4B-.'3$#24-C-!#"3,)4- H,L,",$&,- ;,$*+,- 1")M*F=?-
- 10. Transcriptome pipeline is running in Ergatis. We are optimizing performance and evaluating additional functionality.! [email protected]!
- 11. CREDITS Qunfeng Aaron Ram Kashi Jeong-Hyeon Dong Buechlein Podicheti Revanna Choi Haixu Tang