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How to count the number of reads in each chromosome in a bam file?
How to count the number of reads in each chromosome in a bam file? The bam file is already sorted by the chromosome names. If the bam file is indexed, you may quickly get these info from the index: samtools idxstats in.bam | awk ‘{print $1″ “$3}’ If the bam file is not indexed, you…
How migration thread works inside of Linux Kernel
Abstract In computer systems, resources have to be balanced so that the performance will be better based on the same hardware. In Linux Kernel system, we will see some migration kernel threads running as daemons to do this kind of jobs as follows. In this article, we will discuss how Linux Kernel balances its hardware/software…
How to get files without certain strings in their files names (reverse of *string*) on Linux?
To get files with certain string in their file names, it is quite straightforward: ls *string* However, how to do the reverse one: how to get files without certain strings in their files names on Linux? You can get a list of file names by a combination of find and xargs as follows: find ….
How to efficiently take screenshot on Windows 7
I am tired of the non-efficient “Print Screen” -> Paste in Paint -> Save way. How to efficiently take screenshot on Windows 7? On Windows 7 and later ones, the “Snipping Tool” is handy. Press the “Win” key and input “snipping tool”. The tool will appear in the menu. You can select the whole window,…
Improving Fedora Font Rendering with Open Software and Fonts Only
It is continuously discussed that some Fedora users do not like the font rendering in Fedora Linux and there are solutions to improve the font rendering with potentially non-free or non-licensed software/fonts. However, with only the open source fonts and software and little tricks, the font rendering on Fedora can be quite good. In this…
Syntactical difference among OCaml, Scala, F# and Haskell
What’s the syntactical difference among OCaml, Scala, F# and Haskell. This page gives a side-by-side reference among OCaml, F#, Scala and Haskell: ML Dialects and Friends: OCaml, F#, Scala, Haskell Read more: How to install Scala from the official Scala distribution How to make Alt-Tab switch among windows instead of applications in Gnome 3? What’s…