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60 Open 1,115 Closed
60 Open 1,115 Closed
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Issues list

LoFtee plugin ignores loftee_path parameter and loads default plugin instead of custom version
#1883 opened Jun 12, 2025 by achakkas
@likhitha-surapaneni
2
Breakend variant to span all affected annotations
#1881 opened Jun 11, 2025 by Sanaz01
@likhitha-surapaneni
2
Clinvar annotation not appearing
#1880 opened Jun 5, 2025 by robert-a-forsyth
@dglemos
7
Variant not being annotated
#1879 opened Jun 3, 2025 by kjwinfield
@ainefairbrother
6
Should gnomad be annotated when using the T2T cache?
#1876 opened May 29, 2025 by Mkalyva
@nakib103
1
VEP's COSMIC annotations - terms and conditions
#1875 opened May 27, 2025 by sigven
@nakib103
2
TABIX module not working
#1874 opened May 15, 2025 by kainamill
@olaaustine
3
use or no use shift_3prime , Inconsistency result in hgvsg and clinvar bug
#1867 opened Apr 28, 2025 by ArsFc
@nakib103
5
The current INSTALL.pl script cannot download VEP files using Net::FTP, as the files are now accessible via HTTPS.
#1864 opened Apr 23, 2025 by dolittle007
@nakib103
2
input in HGVSp and HGVSc gives unexpected REF allele in reversed strand genes
#1861 opened Apr 4, 2025 by FedericaBrando
@likhitha-surapaneni
4
Inconsistency between VCF and HGVS
#1857 opened Mar 27, 2025 by senanu
@dglemos
2
substr outside of string at /opt/vep/src/ensembl-vep/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 917
#1845 opened Feb 27, 2025 by suzyhh
@dglemos
2
Intronic insertion incorrectly assigned an exonic coordinate by VEP 113 (structural variant caller-derived)
#1842 opened Feb 19, 2025 by ajw2329
@ainefairbrother
1
VEP does not output motif features (MOTIF_NAME, MOTIF_POS, etc.)
#1840 opened Feb 18, 2025 by tuovinent
@ainefairbrother
1
Selecting sources for output produced by --domains option? enhancement
#1839 opened Feb 12, 2025 by sigven
@nakib103
2
Need distance to flanking upstream and downstream exons and genes
#1834 opened Jan 28, 2025 by Sanaz01
@dglemos
4
Frameshift variant missing "stop_gained" consequence (v113) future_work Changes for VEP process
#1830 opened Jan 14, 2025 by suzyhh
@olaaustine
1
shift_3prime bug bug
#1804 opened Nov 28, 2024 by fzhbioinfo
@olaaustine
2
missing novel transcript in the VEP output
#1801 opened Nov 24, 2024 by tuncayseker
@dglemos
2
Annotation fails randomly with structural variants coming from Manta
#1800 opened Nov 20, 2024 by fperezcobos
@olaaustine
8
Incorrect Annotation for Frameshift Variant in VEP 113 bug
#1796 opened Nov 19, 2024 by GSYongWu
@olaaustine
7
vep can't find index file
#1791 opened Nov 14, 2024 by jerrypgreenberg
@jamie-m-a
3
Missing annotation of intergenic region, --distance doesn't help
#1790 opened Nov 13, 2024 by dshafranskaya
@jamie-m-a
MSG: The coordinate interval for display is of different length than for the reference allele
#1775 opened Oct 22, 2024 by suzyhh
@likhitha-surapaneni
8
Missing annotations for BND variants.
#1774 opened Oct 22, 2024 by ramprasadn
@likhitha-surapaneni
3
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