| Monday, August 10 | |||
| Time (PT) | Session | Presenting author(s) | Title/Event |
|---|---|---|---|
| 8:30am - 9:00am | Breakfast and Registration | ||
| 9:00-9:30 | Welcome | Vincent Carey | |
| 9:30-10:30am | Keynote | Jeff Leek | |
| 10:30-11:00am | Break | ||
| 11:00-12:15pm | Short Talks 1 | Jenny Drnevich | Updates and plans from the Bioconductor Training Committee: new workshop materials and offerings, Physalia collaboration, learning paths, and training in the age of AI |
| Nicholas P Cooley | Developer and Community Engagement: Building a Bioconductor for the future | ||
| David Rach | Cytometry in R: A free weekly course for flow cytometrist with no-to-little coding experience | ||
| Apratim Mitra | Less Code, More Biology: Carnation for Collaborative Multi-Omics Exploration | ||
| Taylor Firman | WILDS WDL Library: Modular, Reproducible Bioinformatics Workflows for the Bioconductor Ecosystem | ||
| Jacob Czech | Architecting Reproducible AI Workflows in the Cloud using Terraform, Docker, and AWS HealthOmics | ||
| 12:30 - 1:30pm | Lunch | ||
| 1:30 - 3:30pm | Workshop 1a | Alexandru Mahmoud | WebR and Bioc2u: new binaries from the Bioconductor Core Team, and how to use them |
| 1:30 - 3:30pm | Workshop 1b | Ted Laderas, Jenny Drnevich | Introduction to Bioconductor |
| 3:00 - 3:30pm | Break | ||
| 3:30-4:15pm | Lightning Talks | ||
| 4:15-4:45pm | Champions Program | Maria Doyle, Nick Cooley | |
| 5:00-7:00pm | Poster session | ||
| Package Demos | Dror Berel Sean Lu Jessica K Anderson Joanne C. Beer |
A Modular Shiny Framework for Interactive Genomic Data Visualization leveraging the Pharmaverse/Teal dashboard framework MetaScope: A High-Resolution Framework for Species-Level 16S Metataxonomic Classification Reproducible Tools and Enhanced Computational Workflows for Batch Effect Evaluation of High-Throughput Data Using BatchQC NULISAseqR: An R Package for End-to-End Analysis of High-Plex Proteomics Data from the NULISAseq Platform |
|
| Posters | Rujuta Shinde Dany Mukesha Tuomas Borman Truong Quynh Hoa Sedat Kacar |
Integrated Multi-Omic Analysis of Single-Nucleus RNA and Chromatin Accessibility Identifies Disrupted Epithelial Adhesion Programs in Prenatal Trisomy 21 Lung Population-scale quantification of microRNA-binding disruptions at the APOE locus using 1000 Genomes allele diversity Orchestrating Microbiome Analysis with Bioconductor Detecting Neurovascular Instability from Multimodal Physiological Signals Using Wearable-Compatible Edge AI: A Responsible Computational Framework seuratPassport: What if your single-cell object carried its own passport and family tree? |
|
| Tuesday, August 11 | |||
| Time (PT) | Session | Presenting author(s) | Title/Event |
| 8:30am - 9:00am | Breakfast | ||
| 9:00-10:00 | Keynote | Ting Ye | |
| 10:00 - 10:30am | Break | ||
| 10:30 - 11:30am | Short talks 2 | Nicholas J Eagles | Leveraging Visium HD to its fullest: the extracellular space |
| Yining Pan | A systematic evaluation of normalization impacts on cell-cell interaction inference in imaging-based spatial transcriptomics | ||
| Kinnary Shah | BatchSVG: identifying batch-biased genes in the application of spatially variable gene detection | ||
| Alexandra Gerveni | Adaptive Threshold Method for Multiplet Detection in Single-Cell RNA-seq Data from Human-Mouse Mixtures | ||
| Favour Igwezeke | absuite: An R/Bioconductor Package for Antibody Repertoire Profiling and Clonotype Analysis | ||
| 11:30-12:00pm | Break | ||
| 12:00 - 1:00pm | Short Talks 3 | Lauren Marie Harmon | burdenBalanceR: An ancestry-aware framework for rare variant burden testing across cohorts |
| Jae Min Park | BREAD: an R package for Bayesian region-specific DNA methylation inference | ||
| Yizhou Huang | Systematic propensity analysis of non-B-form DNA sequences in the human genome and their colocalization with structural variants across cancers | ||
| Matthew Nicholson McCall | Preprocessing and analysis of Perturb-seq data for gene regulatory modeling | ||
| 1:00 - 2:00pm | Lunch | ||
| 2:00-3:30pm | Workshop 2a | Vince Carey | ontoProc2: work with any biological ontology in Bioconductor |
| 2:00-3:30pm | Workshop 2b | Lambda Moses | Wayfarer: A multiscale framework for spatial analysis of tumor progression |
| 3:30-4:00pm | Break | ||
| 4:00-5:30pm | Workshop 3a | Amanpreet Singh | repSpat: A Robust Nonparametric Framework for Detecting Repeated Spatial Patterns in Spatial Omics Data |
| Workshop 3b | Tuomas Borman | Orchestrating Microbiome Analysis with Bioconductor | |
| Wednesday, August 12 | |||
| Time (PT) | Session | Presenting author(s) | Title/Event |
| 8:30am - 9:00am | Breakfast | ||
| 9:00-10:00 | Keynote | Michael Lawrence | |
| 10:00 - 10:30am | Break | ||
| 10:30-12:00pm | Breakout sessions | Curated from topics discussed at the first two days of the conference | |
| 12:00-1:00pm | Lunch | ||
| 1:00-2:00pm | Long Talk | Ben Busby | |
| 2:00-2:30pm | Break | ||
| 2:30-3:30pm | Breakout sessions | Curated from topics discussed at the first two days of the conference | |
| 3:30-4:00pm | Break | ||
| 4:00-4:45pm | End of day recap | ||