WIP: POC of a tool to re-pick primary alignments.

[tfenne]

Very rough work in progress - needs tests and documentation.

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 30 lines in your changes missing coverage. Please review.

Project coverage is 95.25%. Comparing base (ba61d26) to head (e39452f).

Files with missing lines	Patch %	Lines
...com/fulcrumgenomics/bam/PickPrimaryAlignment.scala	0.00%	30 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1012      +/-   ##
==========================================
- Coverage   95.64%   95.25%   -0.39%     
==========================================
  Files         126      127       +1     
  Lines        7395     7425      +30     
  Branches      498      518      +20     
==========================================
  Hits         7073     7073              
- Misses        322      352      +30     

Flag	Coverage Δ
unittests	95.25% <0.00%> (-0.39%)	⬇️

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