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Feat: Migrate Winnow's argument management to a Typer + Hydra yaml architecture

enhancementNew feature or requestNew feature or request

Status: Open.

#146 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 26, 2025

Feat: Add precursor ion signal percentage feature

enhancementNew feature or requestNew feature or request

Status: Open.

#145 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 17, 2025

Fix: bullet list formatting issues in <code>mkdocs</code> 'Contributing' section

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#143 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Fix: README's drop-down table of contents 'CLI' and 'Package' links not working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#140 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Feature: Allow processing of a folder of files at a time

enhancementNew feature or requestNew feature or request

Status: Open.

#139 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Refactor: Simplify storage format for predictions and target sequences

refactorCode cleanup and architectural improvementsCode cleanup and architectural improvements

Status: Open.

#138 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Feature: Give more results file export options

enhancementNew feature or requestNew feature or request

Status: Open.

#137 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

feat: Implement Pointnovo data loading

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#128 In instadeepai/winnow;

· JemmaLDaniel opened on Oct 8, 2025

refactor: Remove use of iter_rows in DatasetLoader

refactorCode cleanup and architectural improvementsCode cleanup and architectural improvements

Status: Open.

#106 In instadeepai/winnow;

· JemmaLDaniel opened on Sep 29, 2025

Migrate from pandas to polars

refactorCode cleanup and architectural improvementsCode cleanup and architectural improvements

Status: Open.

#49 In instadeepai/winnow;

· JemmaLDaniel opened on Mar 21, 2025

refactor: separate confidence into its own feature

refactorCode cleanup and architectural improvementsCode cleanup and architectural improvements

Status: Open.

#45 In instadeepai/winnow;

· amabinsta opened on Mar 20, 2025

[FEATURE] Add Hyperscore calibration feature

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#19 In instadeepai/winnow;

· amabinsta opened on Feb 6, 2025