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Sequencing based indel marker selection and identification

There are some useful scripts.

Transcriptomics Visualization R package.

Draw a dot plot from a paf alignment

📊 Circular and Rectangular Manhattan Plot

Gene Family Annotation Workflow

Visualize and annotate genomic coverage with ggplot2

collection of mini tools for the BioinfToolServer

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions

Generate IGV style locus tracks from bigWig files in R

Genome browser and variant annotation

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

A dotplot generator for large chromosomes

A haplotype analysis toolkit for natural variation study.

Find and visualize rearrangements in DNA sequences

Fast Whole-Genome Similarity (ANI) Estimation

《R语言数据可视化之美》配套代码

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

python plotly Circos from VCF

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

automatic annotation of bHLH gene family in plants

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

Phylogenetic tree viewer based on D3.js