GitHub - lyy005/epps: This is for running the eDNA pipeline in the pfrender lab

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
hmm		hmm
primers		primers
src		src
Demultiplex_primer_v1.4.pl		Demultiplex_primer_v1.4.pl
Kit_basic_stats.pl		Kit_basic_stats.pl
Kit_profiling.pl		Kit_profiling.pl
Kit_profiling_spp.pl		Kit_profiling_spp.pl
Kit_profiling_spp_usearch_v0.91.pl		Kit_profiling_spp_usearch_v0.91.pl
Kit_remove_nontarget_sequences.pl		Kit_remove_nontarget_sequences.pl
Kit_remove_stop_codons.pl		Kit_remove_stop_codons.pl
README		README
README.md		README.md
add_abundance.pl		add_abundance.pl
eDNA_Meta_Pipeline_Script.sh		eDNA_Meta_Pipeline_Script.sh
eDNA_pipeline.pl		eDNA_pipeline.pl
fq2fa.pl		fq2fa.pl
fq_status_V1.2.pl		fq_status_V1.2.pl
nhmmer		nhmmer
pick_sequences_on_hmmer_list.pl		pick_sequences_on_hmmer_list.pl
rename_4.0.pl		rename_4.0.pl
sap		sap
split_fasta.pl		split_fasta.pl
split_sap.pl		split_sap.pl
trimmomatic-0.32.jar		trimmomatic-0.32.jar
unique.pl		unique.pl
usearch		usearch