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Pull requests: nf-core/modules

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Pull requests list

Linting cleanup of modules starting I
#10008 opened Feb 12, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Linting cleanup of modules starting H
#10007 opened Feb 12, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Linting cleanup of modules starting G
#10006 opened Feb 12, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
New module: lsa/cosine (calculate cosine similarity)
#10002 opened Feb 12, 2026 by miguelrosell Loading…
12 tasks done
18
give bwamem2/index a makeover
#9997 opened Feb 12, 2026 by maxulysse Loading…
17 tasks
5
feat: Add CUSTOM_RSEMMERGECOUNTS module and QUANTIFY_RSEM subworkflow size/l size/xl
#9995 opened Feb 12, 2026 by pinin4fjords Loading…
3 of 4 tasks
bases2fastq to topic size/m size/s
#9985 opened Feb 12, 2026 by SPPearce Loading…
Avoid redundant index steps for shared refs
#9983 opened Feb 12, 2026 by pmoris Loading…
1 of 17 tasks
1
Update deacon to 0.13.2 and add versions topic
#9982 opened Feb 12, 2026 by pmoris Loading…
8 of 17 tasks
24
Added output channel maf_bw to sawfish/jointcall
#9981 opened Feb 12, 2026 by Schmytzi Loading…
3 of 17 tasks
1
4
Update smncopynumbercaller, ucsc/wigtobigwig, spring, and tiddit to use topic versions Ready for Review
#9977 opened Feb 11, 2026 by ramprasadn Loading…
17 tasks
2
update svanalysis to topic channels
#9975 opened Feb 11, 2026 by kubranarci Loading…
2 of 17 tasks
2
Module to build local snpEff database
#9967 opened Feb 11, 2026 by pmoris Loading…
6 of 17 tasks
FASTQC: multiqc_files topic
#9964 opened Feb 10, 2026 by maxulysse Loading…
17 tasks
26
Telescope
#9948 opened Feb 9, 2026 by hanalysis Loading…
9 tasks done
1
7
Change output directory and file names for bwa index
#9947 opened Feb 9, 2026 by pmoris Loading…
12 of 17 tasks
5
Paraphase zips output vcf/vcf-index files only when these are created
#9929 opened Feb 8, 2026 by bagnacan Loading…
3 tasks done
1
ci: add Graphite CI Optimizer size/s
#9911 opened Feb 5, 2026 by edmundmiller Loading…
@edmundmiller
2
Update bcl_demultiplex size/m
#9883 opened Feb 4, 2026 by matthdsm Loading…
17 tasks
Add rgi/bwt
#9873 opened Feb 3, 2026 by vinisalazar Loading…
17 tasks done
7
Add fastqscreen aligner option
#9854 opened Feb 3, 2026 by pmoris Loading…
5 of 17 tasks
2
Fix meta_fb never defined in CELLRANGER_MULTI (#9798)
#9803 opened Jan 29, 2026 by SZhengP • Draft
4 of 17 tasks
1
5
update module: PERBASE Ready for Review
#9795 opened Jan 28, 2026 by camlloyd Loading…
3 of 17 tasks
1
5
Update CELLPOSE module to version 4.0.7 and adjust test configurations
#9793 opened Jan 28, 2026 by FloWuenne Loading…
6
Swap bwa/mem to topic and combine output channels size/l
#9783 opened Jan 27, 2026 by SPPearce Loading…
1
ProTip! What’s not been updated in a month: updated:<2026-01-12.