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Run your own AI cluster at home with everyday devices 📱💻 🖥️⌚
The AWS Serverless Application Model (AWS SAM) transform is a AWS CloudFormation macro that transforms SAM templates into CloudFormation templates.
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
FastTree 2: Approximately-Maximum-Likelihood Trees for Large Alignments
CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification of environmental marker genes from sequencing-based communit…
ARMS documentation: Handbook, DMP, SOPs, templates
A robust and fast clustering method for amplicon-based studies
Versatile open-source tool for microbiome analysis
A collection of scripts to assist in the retrieval of data from the ENA Browser
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
Multiple sequence alignment visualizer
Automatically exported from code.google.com/p/figtree
A Git extension for JupyterLab
JupyterLab Extensions by Examples
AI Cluster deployed with Ansible on Random computers with random capabilities
Shiny apps to display Tuna atlas catches with pie maps
Code to create the EMODnet Biology data product: Species Distribution Model of Invasive Macroalgae
A high-performance climate 🌍 data lake supporting subsetting for zarr, netcdf, parquet, arrow ipc, csv and bbf
Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…
Chrome DevTools for coding agents
Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.
A repository aimed at the development of the cubing engine that combines biodiversity data with abiotic data to produce data cubes ready for use within the VRE's of the BmD project
An implementation of the Open MPIC API using AWS-Lambda serverless fucntions written in Python as well as AWS API Gateway.
Open-source platform to build and deploy AI agent workflows.
Glass Keep is Keep Notes alternative using Glass design. Made in React + Tailwind