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Problem of --cluster-size 1

Status: Open.

#17 In soedinglab/spacedust;

· lalintao opened on Nov 27, 2025

Error occurred when mapping the protein sequence to the structure database

Status: Open.

#16 In soedinglab/spacedust;

· longlu428 opened on Nov 19, 2025

comparison accuracy of "spacedust clustersearch" decreases significantly when the targetdb increases

Status: Open.

#15 In soedinglab/spacedust;

· DUANZIHAOO opened on Nov 14, 2025

How can I create a custom reference database

Status: Open.

#14 In soedinglab/spacedust;

· neptuneyt opened on Nov 1, 2025

No datafile could be found for /Database/FoldSeekDB/PDB100_member_to_set!

Status: Open.

#13 In soedinglab/spacedust;

· neptuneyt opened on Nov 1, 2025

Reduction of redundancy in gene clusters

Status: Open.

#12 In soedinglab/spacedust;

· lalintao opened on Oct 28, 2025

Whether spacedust supports MMseqs2-GPU version？

Status: Open.

#11 In soedinglab/spacedust;

· zhaorui-bi opened on Oct 8, 2025

Cant find the Google Colab notebook in the paper

Status: Open.

#10 In soedinglab/spacedust;

· Shild94 opened on Oct 7, 2025

[Question] Paper doesn't mention fungal genomes--any reason it shouldn't work?

Status: Open.

#9 In soedinglab/spacedust;

· DaRinker opened on Sep 30, 2025

"Clusterhits failed. Invalid query lookup record." with .fna and .gff3 files from NCBI

Status: Open.

#7 In soedinglab/spacedust;

· SamuelSchwab opened on Jun 17, 2025

version tags

Status: Open.

#6 In soedinglab/spacedust;

· KerrinSteensen opened on Nov 5, 2024

Passing large numbers of files to createsetdb

Status: Open.

#5 In soedinglab/spacedust;

· SDmetagenomics opened on Oct 30, 2024