Lists (5)
Stars
Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2 BETA
Website / continuous DB builds for SingleM
A declarative interactive genomics visualization library for Python.
NCBI Prokaryotic Genome Annotation Pipeline
An analysis and visualization platform for 'omics data
The code for gene set analysis by accessing domain databases
Filtering and trimming of long read sequencing data
Data collections code including a service and loaders
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
Transcript assembly and quantification for RNA-Seq
Genome-scale protein function classification
ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction
🦠 A tool for identifying and analyzing functions in microbial genomes.
Detecting contamination in NGS data and multi-species analysis
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Aggregate results from bioinformatics analyses across many samples into a single report.
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
D-Lab's 6-part, 12-hour introduction to Python. Learn how to create variables, use methods and functions, work with if-statements and for-loops, and do data analysis with Pandas, using Python and J…