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Automatic atomic model building program for cryo-EM maps
cryo-ET particle picking by representation and metric learning
A collection of small scripts to help with editing .mdoc files (for cryoET) in bulk.
Scripts to make cryo-electron tomography a bit easier
A comprehensive foundation model for cryo-EM image processing
A transformer model for picking protein particles in cryo-EM images
Scaling data analyses in cellular cryoET using comprehensive segmentation.
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
Tilt Interpolation Generator for Enhanced Reconstruction in cryo electron tomography
Python scripts to manipulate Relion tomo STAR files and much more...
🍦Icecream: a self-supervised framework for cryo-ET reconstruction
Self-supervised deep learning framework for CryoET analysis
Removing etomo skipped views from Warp xml files to improve the tomogram reconstruction.
For CryoET projects, when a WarpTools directory is moved, all the metadata files and settings files in the directory still record the old absolute paths to the raw data. This script will replace al…
TrinityX is the new generation of ClusterVision's open-source HPC, A/I and cloudbursting platform. It is designed from the ground up to provide all services required in a modern HPC and A/I system,…
Definitions for a collaborative cryoET annotation tool.
Neural networks for cryo-EM reconstruction
A curated list of awesome computational cryo-ET methods.