CHEMICAL BONDING AND MOLECULAR STRUCTURE Notes
CHEMICAL BONDING AND MOLECULAR STRUCTURE Notes
• When two atoms are far apart, there is no attraction or repulsion between the atoms.
Total energy is the sum of energies of the two atoms and no bond formation takes place.
• As atoms come closer, three types forces come into action between the atoms.
1. Nucleus – Electron Attraction
2. Electron – Electron Repulsion
3. Nucleus- Nucleus Repulsion
• In the beginning attractive forces dominate repulsive forces. This results in decrease
of potential energy.
• When atoms come closer and closer, attractive force increases continuously and
potential energy also decreases.
• At a certain internuclear distance, the attractive force becomes maximum and the
potential energy of the system becomes minimum. At this state the two atoms
combine to form covalent bond.
• The internuclear distance corresponding to this state is called bond length and the
energy corresponding to this state is called bond energy.
• If atoms are brought further closer, the repulsive forces dominate and potential energy
of the system increases rapidly.
This theory was suggested by Heitler and London and was later developed by Pauling and
Slater.
1. s-s overlapping.
Two s- orbitals always overlap axially. Therefore, overlapping of two s-orbital always
forms sigma bond.
Example: H2 molecule
2. s-p overlapping.
Overlapping of s and p orbitals always takes place axially and therefore, forms a sigma
bond.
Example: H-F, HCl, HBr, HI
3. p-p overlapping.
p-p overlapping can take place in two ways.
i) Axial Overlapping / end to end overlapping / head on overlapping.
When two p-orbitals overlap axially, a sigma bond is formed.
N2 molecule
8. Free rotation of atoms or groups about sigma Free rotation is not possible. (Free rotation
bond is possible. is restricted.)
Explanation.
Be acquires two half-filled orbitals by the excitation of one electron from 2s orbital to 2px
orbital as follows. Be* - 1s2,2s1,2px1.
Now, there are two half-filled orbitals and Be can exhibit covalency equal to 2.
B acquires three half-filled orbitals by the excitation of one electron from 2s orbital to 2py
orbital as follows. B* - 1s2,2s1,2px1 2py1.
Now, there are three half-filled orbitals and B can exhibit covalency equal to 3.
C acquires four half-filled orbitals by the excitation of one electron from 2s orbital to 2pz orbital
as follows. C* - 1s2,2s1,2px1 2py1, 2pz1.
Now, there are four half-filled orbitals and C can exhibit covalency equal to 4.
HYBRIDISATION
In order to explain the geometry of molecules, identical bond lengths and identical bond
angles, Linus Pauling introduced a hypothetical concept of hybridization
Rules of Hybridisation.
Types of Hybridisation
1. sp3 hybridisation.
It is the intermixing of one s-orbital and three p-orbitals to form four hybrid orbitals
which are directed to the four corners of a regular tetrahedron at an angle of 109o28’.
C (ground state) ⥮ ⥮ ↿ ↿
1s2 2s2 2px1, 2py1. 2pz0.
C* (excited state) ⥮ ↿ ↿ ↿ ↿
1s2 2s1 2px1, 2py1. 2pz1.
sp3 hybridisation
2s,2px, 2py and 2pz orbitals of carbon atom undergo sp3 hybridisation to form four hybrid
orbitals of equal energy and identical shape. The hybrid orbitals are directed to the four
corners of a regular tetrahedron at 109028’.
C (hybrid state) ⥮ ↿ ↿ ↿ ↿
Each hybrid orbital containing unpaired electron overlaps with 1s orbital of hydrogen atom
to form four C-H sigma bonds. Thus, the resulting methane molecule is tetrahedral in shape
with H-C-H bond angle equal to 109028’.
Example 2. Ethane (CH3-CH3)
C (ground state) ⥮ ⥮ ↿ ↿
1s2 2s2 2px1, 2py1. 2pz0.
C* (excited state) ⥮ ↿ ↿ ↿ ↿
1s2 2s1 2px1, 2py1. 2pz1.
sp3 hybridisation
In ethane, both carbon atoms undergo sp3 hybridisation separately. The hybrid orbitals are
directed to the four corners of a regular tetrahedron at 109028’. One hybrid orbital of one
carbon atom overlaps axially with a hybrid orbital of the other carbon atom to form a C-C
sigma bond. The remaining three hybrid orbitals of each carbon atom overlap with 1s orbital
of hydrogen atoms to form six C-H sigma bonds. Thus ethane molecule contains one C-C
sigma bond and six C-H sigma bonds.
Note:
• Each sp3 hybrid orbital has 25% s-character and 75% p-character.
• In alkanes C- atoms are sp3 hybridised.
• More examples: CCl4, SiCl4, NH4+, H2SO4 etc.
2. sp2 Hybridisation
It is the intermixing of one s-orbital and two p-orbitals to form three hybrid orbitals which are
directed to the three corners of an equilateral triangle at an angle of 1200.
Example 1. Boron trifluoride. (BF3)
B (ground state) ⥮ ⥮ ↿
1s2 2s2 2px1, 2py0. 2pz0.
B* (excited state) ⥮ ↿ ↿ ↿
1s2 2s1 2px1, 2py1. 2pzo.
sp2 hybridisation
2s,2px, and 2py orbitals of boron atom undergo sp2 hybridisation to form three hybrid orbitals
of equal energy and identical shape. The hybrid orbitals are directed to the three corners of
an equilateral triangle at an angle of 1200.
B (hybrid state) ⥮ ↿ ↿ ↿
Each hybrid orbital containing unpaired electron overlaps with 2pz orbital of fluorine atom to
form three B-F sigma bonds. Thus, the resulting BF3 molecule has a trigonal planar
geometry with F-B-F bond angle equal to 1200
C (ground state) ⥮ ⥮ ↿ ↿
1s2 2s2 2px1, 2py1. 2pz0.
C* (excited state) ⥮ ↿ ↿ ↿ ↿
1s2 2s1 2px1, 2py1. 2pz1.
sp2 hybridisation
In ethene, both carbon atoms undergo sp2 hybridisation separately. The hybrid orbitals are
directed to the three corners of an equilateral triangle at an angle of 1200. The unhybridized
2pz orbital of each carbon atom lies perpendicular to the plane of the hybrid orbitals. One
hybrid orbital of one carbon atom overlaps axially with a hybrid orbital of the other carbon
atom to form a C-C sigma bond. The remaining two hybrid orbitals of each carbon atom
overlap with 1s orbital of hydrogen atoms to form four C-H sigma bonds. The unhybridized 2pz
orbitals undergo parallel overlap to form a C-C pi bond. Thus, ethene molecule has a planar
geometry and it contains five sigma bonds and a pi bond. The H-C-H bond angle is 117.50 and
H-C-C bond angle is 1210.
Note:
• Each sp2 hybrid orbital has 33.33% s-character and 66.67% p-character.
• In alkenes double bonded C- atoms are sp2 hybridised.
• More examples: BCl3, NO3-, CO32- etc.
3. sp hybridisation.
It is the intermixing of one s-orbital and one p-orbital to form two hybrid orbitals which are
arranged linearly at an angle of 1800.
Be (ground state) ⥮ ⥮
1s2 2s2 2px1, 2py0. 2pz0.
sp hybridisation
2s,and 2px, orbitals of boron atom undergo sp hybridisation to form two hybrid orbitals of
equal energy and identical shape. The hybrid orbitals are arranged linearly at an angle of 1800.
Be (hybrid state) ⥮ ↿ ↿
Each hybrid orbital containing unpaired electron overlaps with 2pz orbital of fluorine atom to
form two Be-F sigma bonds. Thus, the resulting BeF2 molecule has a linear geometry with
F-Be-F bond angle equal to 1800.
C (ground state) ⥮ ⥮ ↿ ↿
1s2 2s2 2px1, 2py1. 2pz0.
C* (excited state) ⥮ ↿ ↿ ↿ ↿
1s2 2s1 2px1, 2py1. 2pz1.
sp hybridisation
In ethyne, both carbon atoms undergo sp hybridisation separately. The hybrid orbitals are
arranged linearly at an angle of 1800. The unhybridized 2py and 2pz orbitals of each carbon
atom are perpendicular to each other and lies perpendicular to the plane of the hybrid
orbitals. One hybrid orbital of one carbon atom overlaps axially with a hybrid orbital of the
other carbon atom to form a C-C sigma bond. The remaining one hybrid orbital of each
carbon atom overlap with 1s orbital of hydrogen atoms to form two C-H sigma bonds. The
unhybridized 2py and 2pz orbitals undergo parallel overlap to form two C-C pi bonds. Thus,
ethyne molecule has a linear geometry with H-C-C bond angle equal to 1800. Acetylene
molecule contains three sigma bonds and two pi- bonds.
Note:
It is the intermixing of one s-orbital, three p-orbitals and one d-orbital to form five hybrid
orbitals which are directed to the five corners of a trigonal bipyramid.
• Three hybrid orbitals are directed to the three corners of an equilateral triangle at angle
of 1200.
• The remaining two hybrid orbitals lie perpendicular to the plane of triangle lying above
and below it.
• Examples: PF5, PCl5 etc.
Structure of PCl5
P (ground state) ⥮ ↿ ↿ ↿
P* (excited state) ↿ ↿ ↿ ↿ ↿
sp3d hybridisation
3s,3px, 3py, 3pz and one 3d orbitals of phosphorus atom undergo sp3d hybridisation to form
five hybrid orbitals which are directed to the five corners of a trigonal bipyramid. These hybrid
orbitals overlap with 3pz orbitals of chlorine atoms to form five P-Cl sigma bonds. Thus, PCl5
has a trigonal bipyramidal geometry.
Three P-Cl bonds lie in one plane at an angle of 1200 to one another. These bonds are
called equatorial bonds. The remaining two P-Cl bonds lie perpendicular to the plane
containing equatorial bonds making an angle 900 with the plane. These bonds are called axial
bonds.
Note.
sp3d2 hybridisation.
It is the intermixing of one s-orbital, three p-orbitals and two d-orbitals to form six hybrid
orbitals which are directed to the six corners of an octahedron (square bipyramid) at an
angle of 900.
Example: SF6
S (ground state) ⥮ ⥮ ↿ ↿
sp3d2 hybridisation
3s,3px, 3py, 3pz and two 3d orbitals of Sulphur atom undergo sp3d2 hybridisation to form six
hybrid orbitals which are directed to the six corners of an octahedron (square bipyramid) at
an angle of 900. These hybrid orbitals overlap with 2pz orbitals of fluorine atoms to form six
S-F sigma bonds. Thus, SF6 has an octahedral geometry with F-S-F bond angle equal to 900.
sp3d3 hybridisation.
It is the intermixing of one s-orbital, three p-orbitals and three d-orbital to form seven hybrid
orbitals which are directed to the seven corners of a pentagonal bipyramid.
• Five hybrid orbitals are directed to the five corners of a regular pentagon at angle of 720.
• The remaining two hybrid orbitals lie perpendicular to the plane of pentagon lying above
and below it.
• Example: IF7
Structure of IF7
I (ground state) ⥮ ⥮ ⥮ ↿
sp3d3 hybridisation
5s,5px, 5py, 5pz and three 5d orbitals of iodine atom undergo sp3d3 hybridisation to form seven
hybrid orbitals which are directed to the seven corners of a pentagonal bipyramid. These
hybrid orbitals overlap with 2pz orbitals of fluorine atoms to form seven I-F sigma bonds. Thus,
IF7 has a pentagonal bipyramidal geometry.
• Five I-F bonds lie in one plane at an angle of 720 to one another. These bonds are called
equatorial bonds.
• The remaining two I-F bonds lie perpendicular to the plane containing equatorial
bonds making an angle 900 with the plane. These bonds are called axial bonds.
• Axial I-F bonds(179pm) are shorter than equatorial I-F bonds(186pm).
• Equatorial I-F bond pairs experience greater repulsion from other bond pairs d. Hence
the bond length increases slightly.
• Due to different bond lengths and bond angles, it has an irregular geometry.
• Though, it has an irregular geometry, net dipole moment of the molecule is almost
zero. Hence, it is a non-polar molecule.
VALENCE SHELL ELECTRON PAIR REPULSION THEORY. [VSEPR Theory] [Sidgwick and Powell]
In 1940, Sidgwick and Powell suggested a basic theory based on the repulsive interactions of
electron pairs in the valence shell of atoms. This theory gives a simple method for predicting
the shapes of covalent compounds.
1. The geometry or shape of a molecule depends upon the number of valence shell
electron pairs present around the central atom
2. Electron pairs in the valence shell repel one another and try to stay as far apart as
possible to acquire a state of maximum stability or minimum repulsion or minimum
energy
3. Repulsion between lone pair and lone pair, lone pair and bond pair and bond pair and
bond pair are different and follows the order:
Lone pair(lp) – lone pair(lp) > lone pair(lp) – bond pair(bp) > bond pair (bp)– bond pair(bp).
4. Repulsive forces decrease sharply with the increase in angles between the electron
pairs. They are strong at 90° weaker at 120° and weakest at 180°.
5. Presence of lone pair of electron causes distortion in the geometry of the molecule.
Example 1 . BeF2
In BeF2, the central Be atom possesses two bond pairs of electrons and no lone pairs. For
maximum stability, these electron pairs will be arranged at an angle of 1800. Thus, BeF2 has
a linear geometry.
Example 2. BF3
In BF3, the central B atom possesses three bond pairs of electrons and no lone pairs. For
maximum stability, these electron pairs will be arranged at an angle of 1200. Thus, BF3 has a
trigonal planar geometry.
Example 3. CH4
In CH4, the central C atom possesses four bond pairs of electrons and no lone pairs. For
maximum stability, these electron pairs will be arranged at an angle of 109028’. Thus, CH4 has
a tetrahedral geometry.
B. Molecules Containing Bond Pairs and Lone pairs.
Thus, valence shell of nitrogen atom of ammonia contains three bond pairs and one lone pair.
According to VSEPR theory, lone pair-bond pair repulsion is stronger than bond pair-bond
pair repulsion. Thus, lone pairs will repel the bond pairs strongly and bond angle decreases
to 1070 from the expected angle of 109028’. Ammonia molecule has a trigonal pyramidal
geometry.
Thus, valence shell of oxygen atom of water contains two bond pairs and two lone pairs.
According to VSEPR theory, lone pair - lone pair repulsion > lone pair-bond pair repulsion >
bond pair-bond pair repulsion. Thus, the two lone pairs will repel the bond pairs strongly and
bond angle decreases to 104.50 from the expected angle of 109028’. Water molecule has a
bent or angular geometry (V -shape).
Prediction of Hybridisation.
N = ½ [V + M – C + A]
Where, N = Number electron pairs (bond pairs + lone pairs) or number of hybrid orbitals.
Question. Predict the hybridization of the central atom in the following molecules or ions.
CO2, SO2, SO3, H2SO4, HNO3, H3PO4, HClO4, HClO3, HClO2, H2CO3, SiCl4, ClF3, IF5, XeF2, XeF4,
XeF6, COCl2, NH4+, POCl3, SO42-, ClO4-, PO43-
2. Molecular orbitals are polycentric. They surround the nuclei of the combining atoms instead
of moving around a particular nucleus.
3. Molecular orbitals are formed by the combination of atomic orbitals of comparable energies
and proper orientation.
4. Number of molecular orbitals formed is same as the number of combining atomic orbitals.
6. Like atomic orbitals, molecular orbitals also obey Pauli's Exclusion Principle, Hund's Rule of
maximum multiplicity and Aufbau Principle.
2. Atomic orbitals are inherent property of Molecular orbitals are formed by the
atoms. These are obtained by solving combination of atomic orbitals.
Schrodinger wave equation.
3. Atomic orbitals possess higher energy and are Molecular orbitals possess lower energy and are
less stable. more stable.
4. They have simple shapes. They have complex shapes.
5. Atomic orbitals are designated as s,p,d,f etc . Molecular are designated as 𝝈 , 𝝈∗ , 𝝅, 𝝅∗ etc.
Types of Molecular Orbitals.
When two combining atoms approach each other, the electron waves of the atoms can
combine in two ways:
1. If the two electron waves are in phase, the electron waves get added up (constructive
interference of waves). The resulting wave has more electron density in between the nuclei.
This molecular orbital obtained by the addition of wave function (addition overlap of atomic
orbitals or constructive interference of electron waves) is called Bonding Molecular Orbital
[BMO].
Mathematically, Ψb = ΨA + ΨB
Energy of Bonding Molecular orbital is less than the energy of the combining atomic orbitals.
2. If the two electron waves are out of phase, the amplitude of electron waves get subtracted
or cancelled (destructive interference of waves). The resulting wave has less electron density
in between the nuclei. This molecular orbital obtained by the subtraction of wave function
(subtraction overlap of atomic orbitals or destructive interference of electron waves) is
called Anti-Bonding Molecular Orbital [AMO].
Mathematically, Ψa = ΨA - ΨB
Energy of Ant-Bonding Molecular orbital is more than the energy of the combining atomic
orbitals.
Difference between Bonding and Ant-bonding Molecular Orbitals
2. The wave function of BMO is obtained by 2. The wave function of AMO is obtained
summing up the wave functions of the by subtracting the wave functions of the
combining atoms. (Ψb = ΨA + ΨB) combining atoms. (Ψa = ΨA ̶ ΨB)
3. The electron density concentrated between 3. The electron density between the nuclei
the nuclei of the combining atoms. of the combining atoms is negligible.
4. The energy of BMO is less than that of the 4. The energy of AMO is less than that of
combining atomic orbitals. the combining atomic orbitals.
• When atomic orbitals overlap along the internuclear axis (axial overlap), the molecular
orbitals formed are called sigma (𝝈) molecular orbitals.
• When the electron waves are in phase bonding sigma molecular orbital (𝝈) is formed.
• When the electron waves are out of phase anti-bonding sigma molecular orbital ( 𝝈∗ )
is formed.
• When atomic orbitals overlap sidewise, (parallel overlap), the molecular orbitals
formed are called pi (𝜋 ) molecular orbitals.
• When the electron waves are in phase bonding pi molecular orbital (𝜋) is formed.
• When the electron waves are out of phase anti-bonding pi molecular orbital ( 𝝅∗) is
formed.
Similarly, If the combining atomic orbitals are 2s and 2s, the bonding molecular orbital is
represented as 𝝈𝟐𝒔 and the anti-bonding molecular orbital as 𝝈∗ 𝟐𝒔.
subtraction
Addition
a) Axial Overlap. If Z-axis is the inter nuclear axis, the 2pz orbitals overlap axially to form two
𝜎 molecular orbitals. The bonding molecular orbital is represented as 𝝈𝟐𝒑𝒛 and antibonding
molecular orbital is represented 𝝈∗ 2𝒑𝒛 .
b) Sidewise Overlap. Sidewise overlap p-orbitals gives pi( 𝜋) molecular orbitals. Bonding
molecular orbital formed by the sidewise overlap of two 2px orbitals is 𝝅2px and the
antibonding molecular orbital is represented as 𝝅∗ 2𝒑𝒙 .
Similarly, side wise overlap of two 2py orbitals gives 𝝅2py and 𝝅∗ 2𝒑𝒚 molecular orbitals.
i) pz and pz combination
Differences between Sigma and Pi Molecular Orbitals
Following is the increasing order of energies of molecular orbitals for homonuclear diatomic
molecules such as Li2, Be2 B2 C2 and N2.
𝝈𝟏𝒔 < 𝝈∗ 𝟏𝒔 < 𝝈𝟐𝒔 < 𝝈∗ 𝟐𝒔 < 𝝅2px = 𝝅2py < 𝝈𝟐𝒑𝒛 < 𝝅∗ 2𝒑𝒙 = 𝝅∗ 2𝒑𝒚 < 𝝈∗ 2𝒑𝒛 .
In case of O2, F2 and Ne2, the increasing order of energies of molecular orbital is as follows.
𝝈𝟏𝒔 < 𝝈∗ 𝟏𝒔 < 𝝈𝟐𝒔 < 𝝈∗ 𝟐𝒔 < 𝝈𝟐𝒑𝒛 < 𝝅2px = 𝝅2py < 𝝅∗ 2𝒑𝒙 = 𝝅∗ 2𝒑𝒚 < 𝝈∗ 2𝒑𝒛 .
Filling up of molecular orbitals takes place according to Pauli’s principle, Hund’s rule and Aufbau
principle.
Bond Order.
It is defined as “one half of the difference between the number of electrons in bonding
molecular orbital and the number of electrons in antibonding molecular orbitals”.
• The bond order shows the number of covalent bonds present between a pair of atoms.
• The bond order describes the stability of the covalent bond. Greater the bond order
greater is the stability of the molecule or ion.
• Bond order may be +ve, ̶ ve , zero or fractional.
• A molecule or ion is stable only when the bond order is positive. When the bond order is
negative or zero, the molecule is unstable and does not exist.
• A molecule or ion having fractional bond order is paramagnetic.
• When the bond order is a positive whole number, the species may be paramagnetic or
diamagnetic.
1. Stability of molecule.
i) If Nb > Na, bond order is +ve and the molecule or ion is stable.
ii) if Nb < Na, bond order is ̶ ve and the molecule or ion is unstable and doesn’t exist.
iii) if Nb = Na, bond order is zero and the molecule or ion is unstable and doesn’t exist.
Greater the bond order greater is the stability of the molecule or ion.
Bond orders 1,2, and 3 correspond to single, double and triple bonds respectively.
3. Bond length . Higher the bond order, shorter is the bond length.
𝟏
Bond oder ∝
𝑩𝒐𝒏𝒅 𝒍𝒆𝒏𝒈𝒕𝒉
Higher the value of bond order, greater is the bond dissociation energy
5. Magnetic Behaviour .
A molecule or ion having fractional bond order is paramagnetic. When the bond order
is a positive whole number, the species may be paramagnetic or diamagnetic.
M.O. Diagram and Electronic Configuration Of Some Homonuclear Diatomic Molecules.
H – 1s1
H – 1s1, H+ – 1s0
Since bond order is +ve H2+ is stable, but less stable than H2
H – 1s1, H ̶ = 1s2
Since bond order is +ve H2 ̶ is stable, but less stable than H2,
But less stable than H2+ ion because, presence of electron in antibonding orbital
destabilises the ion
Hence it is paramagnetic.
Hence it is diamagnetic.
9. Nitrogen Molecule. (N2).
Hence it is diamagnetic.
Question. Arrange the following species in the increasing order of their stability.
1. O2 molecule.
O – 1s2, 2s2, 2px2, 2px1 2pz1 . O2 has sixteen electrons.
[Link]. of O2 = KK (𝜎2s)2, (σ*2s)2, (𝜎2pz)2,(𝜋2px)2 = (𝜋2py)2, (𝜋 ∗ 2px)1 = (𝜋 ∗ 2py)1
Higher the bond order greater is the stability. Thus, the stability of O22-< O2- < O2 < O2+.
Energy
F F
F2
11. Neon Molecule (Ne2) (hypothetical)